KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112253095
Entry
112253095         CDS       T05605                                 
Name
(RefSeq) protein bicaudal C homolog 1 isoform X1
  KO
K18756  protein bicaudal C
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:otw00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:otw03019]
    112253095
Messenger RNA biogenesis [BR:otw03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     112253095
SSDB
Motif
Pfam: KH_BICC1 KH_BICC1_1st KH_1 SAM_1 SAM_2 KH_Vigilin KH-I_KHDC4-BBP KH_Mug60-KHD4 SAM_Ribosomal_mS41
Other DBs
NCBI-GeneID: 112253095
NCBI-ProteinID: XP_024280777
LinkDB
Position
LG06:75787517..75861510
AA seq 1001 aa
MAAQCDSLSGYLQQSDQGSNSERSTDSPVAGSEDDLSGPHALPDPEWTEERFRVDRKKLE
IMLLAATEGRVNGGEDFFQKVMDETKTQIAWPSKLKIGAKSKKDPHIKVCGKRDNVREAK
DRIMSVLDTKQSNRVTLKMDVSHTEHSHVIGKGGNNIKKVMEDTGCHIHFPDSNRNNQAE
KSNQVSIAGQPGGVEAARSKIRELLPLVLSFELPAIVQPDPGSPTVQHISQTYNLTVSFK
PPTRLYGTTGVVRGSQNNSSAVKRGTAILLEHLAGSLASAISVSTHLDIAPQHHLFMMGR
NGSNIKHITQRTGAQIHFPDPNSPQKKSTVYIQGIIESVCVARQYLMGCLPLVLMFDIKE
DIEVEPQYITALMEQLDVFISIKPKPKQPSKSVIVKSVERNAVNMYEARKFLLGLESNGV
SSALSPSTIGPSPTLICPVGLDILASAGLGLSSLGLLGPSAPHSLSSSPAPNSVLNSLNS
SMSPLQNPPSPSPSLWPSSLTSTQGFSSQLMMHPVAQATLSSILLSGVKGYTQNTPSPPP
GLAPIDKQTNGVPDCSKGPCTMNGHVKHPGSVYGRMSSASLADTVLNPNQCDSVQEASVH
NQSEPRSSKSNQDEGSDTFVEVGMPRSPSHSANGNELKQMLASCKTSGKRHAVELLQGTK
NSHLQYVCPELHSLLSPPHSSDCLLSDPESSASDGPVTDKRAPGSERAAERAAERAAQQN
ERDRIRLAPHSSFANMQVQLEALEYEQKKLLATKAMLKKPVVTEVRTPTNTWSGLGFSKS
MPAETIKELRRANHVSYKPTMSTTYEVNSDYEGSPLSLSRSGSREGVGNGSDSDNWRDRN
GVGNGLVNHAEFPASVNSPKRKQNKSAAEHYLSSSNYMDCISSVTGSNGCSLQSSLKGSD
LPELFSKLGLGKYTDVFQQQEIDLQTFLTLTDQDLKELGITTFGARRKMLLAISGVNDYE
LNKNRRKLFEPPIRSSFLEGGASGRLSRQFHADMASVSGRW
NT seq 3006 nt   +upstreamnt  +downstreamnt
atggctgcccagtgcgactctttgagcggatacttgcaacagtccgaccagggctcgaac
agcgagcgcagtaccgactccccggtcgccggctccgaggatgacttgagcggaccccat
gccttaccagacccggagtggacggaggagagatttcgagtggaccgcaagaaactggaa
atcatgttattagcggcaactgagggaagagtcaatggtggcgaggacttctttcagaag
gtcatggatgaaaccaaaacacagatagcgtggccttccaaactgaagatcggcgccaag
tccaaaaaagatccgcacattaaggtttgtggaaagagagacaacgtgagggaagccaaa
gaccgaatcatgtcagtcctcgacacaaagcagagtaacagggtaacccttaagatggac
gtgtcccacacagagcactcccacgtcatcggcaagggaggcaacaacatcaagaaggtg
atggaggacacgggctgccacatccacttcccagactccaaccgcaacaaccaggcggag
aagagcaaccaggtgtccattgcaggccagccaggaggggtagaggcagctcgatccaaa
atcagagagctgctccctctggttctgtcgtttgagctgccagccatcgtgcagcctgac
ccaggctcccccacagtgcagcacatctcccagacatacaacctcaccgtctccttcaag
ccccccacacgtctctatggcaccaccggagtggtccgcggctcccagaacaactctagt
gccgtcaagagaggcactgccatattgctggagcacctggcgggcagcctggccagtgcc
atctcagtcagtacccacctggacatcgccccccagcaccacctcttcatgatgggccgc
aacggcagcaatatcaagcacatcacccagaggacaggagcccagatccacttccccgac
cccaacagcccccagaagaaatctactgtttacatccagggaatcatcgagtctgtctgc
gtggctcgccagtacctcatgggctgtctaccgctggtgctgatgtttgacattaaagag
gacatcgaggtggagccccagtatatcaccgctctgatggagcagctggatgtcttcatc
agcatcaagcccaaaccaaagcagcccagcaagtctgtgatcgtaaagagtgtggagcgg
aatgcagtgaacatgtacgaggcccggaagtttctgctgggtctggagagcaacggagtt
tcatcagccctgtccccctcaaccatcggcccctcccccactctcatctgtcccgtcggc
ctggacatcctggcctcagctggcctggggctgagcagtctgggcctcctggggccgtca
gcgccccattccctcagtagctccccggctccaaactctgtcctcaacagtctgaactct
tccatgagccccctgcagaaccccccgtctccctccccctcactgtggcccagctctctc
accagcacacaaggcttctcgtctcagttgatgatgcaccctgtagcccaggccactctg
agcagtatcctgctctctggggtcaaggggtacacccaaaacactccctcccctcccccc
ggcctcgccccgatcgacaagcagaccaacggagtccctgactgctccaaaggcccctgt
accatgaatggacatgtaaagcaccctggctcagtctatggaaggatgtccagtgcatct
ctggcagacacagttctgaaccccaaccagtgtgactcagttcaggaggccagcgtacac
aaccagtcagaaccccgctccagcaagtccaaccaagacgaaggctctgacacctttgtg
gaagtgggcatgcccagaagcccatctcactcagccaatgggaacgagctaaaacagatg
ctggcttcctgtaagacgtcagggaaacggcatgcggtggagctcctccaggggaccaag
aactcccatctccagtatgtctgtccagagctacactctctgttgtcccccccccacagc
tcagactgcctcctgtcagacccagagtcgagtgcttcagacggccctgtgacggataag
agggcgccgggcagtgagcgggcagcagagagggcagcagagagggcagcacagcagaac
gaaagggacaggatccgcttggcaccacattcctcctttgccaacatgcaggtacaacta
gaggctcttgaatatgaacagaaaaagctgttagcaaccaaagctatgttgaagaagcct
gttgtgactgaggtacggaccccaactaacacgtggagtggtctgggtttttccaagtcc
atgccagcggagaccatcaaggagctgcgcagggccaaccacgtttcttacaaacccaca
atgagtaccacctatgaggtaaactctgactatgagggctcccccctgtccctgtcccgc
tccggcagcagagagggcgtgggcaatggcagtgattctgacaactggagggacaggaac
ggggttgggaacggtcttgtcaaccacgccgaattccctgcgtctgttaacagtcccaag
aggaagcagaacaaatctgctgcggagcactatctgagcagcagtaactacatggactgt
atctcctcggtcaccgggagcaatggctgcagtcttcagtcctctctcaaagggtcggac
ctgccggagctgttcagcaagctgggcctggggaaatacactgacgtgttccaacaacag
gagatcgatctccagaccttcctcactctgacagaccaggacctgaaagagctgggcatc
accacatttggagcacgcaggaaaatgctgcttgccatctcaggtgtgaatgactatgaa
ctgaacaagaaccgaaggaagctgtttgagcctcctatcaggtcctccttcctggaaggc
ggcgccagcgggcgtctgtctcgtcagttccacgctgacatggccagtgtcagtggccgg
tggtag

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