Oncorhynchus tshawytscha (Chinook salmon): 112253128
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Entry
112253128 CDS
T05605
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04517
IgSF CAM signaling
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
112253128
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
112253128
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
otw04812
]
112253128
Cytoskeleton proteins [BR:
otw04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
112253128
Intermediate filaments
Intermediate filament-binding proteins
112253128
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
SOS1_NGEF_PH
CH_2
Motif
Other DBs
NCBI-GeneID:
112253128
NCBI-ProteinID:
XP_024280846
LinkDB
All DBs
Position
LG06:complement(78367150..78491388)
Genome browser
AA seq
2343 aa
AA seq
DB search
MTSVAADFDHMEIQQQQYSSDTVNNRWDVDEWDNENSSARLFERSRIKALADEREAVQKK
TFTKWVNSHLARVSCRITDLYMDLRDGRMLIKLLEVLSGERLPKPTKGRMRIHCLENVDK
ALQFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDIRVETEDNKEKKSAKDA
LLLWCQMKTAGYPNVNIHNFSTSWRDGMAFNAILHKHRPDLIDFDKLKKSNAHHNLQNAF
NLAEQHLGIHKLLDVEDISVDHPDEKSVITYVVTYYHYFSKMKALKVEGKRIGKVLDNAI
ETDNMIQKYESLASDLLEWIEQTIIILNNRKFANSLVGVQQQLQAFNTFRLSRGKAPKFT
EKGNLEVLLFTIQSKMRANNQKVYMPRDGKLISDINKAWERLEKSEHERELALRTELIRQ
EKLEQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLQAVEAATKKHEAIETDIGAYEER
VQAVLSVAKELEAENYHDIKRVTARKDNVLRLWEYLLELLKARRIRLEMNLGLQRVFQEM
LHIMDWMDEMKMLLLSQDYGKHLLGVEDLLQKHALVEADIAIQANRVKAVNNNAQKFAID
AEGYKPCDPQVIRDRMAHMEFCYAELSQLAADRCARLEESRRLWKFFWEMAEEEGWIREK
EQILSSEDCGKDLTGAVRLLSQHRAFEDEMSGRAGHLQQTIKQGEELVAADHFGADKIRK
RIQDIQAQWAALEGLSAVRKARLEEACNLHQFQADADDIDAWMLDVLRIVSSADVGHDEF
STQALVKKHKDVAEEITSYRPVIDALHEQSKTLPKEQTGSEEVQGRLAGIEERYKEVAEL
TRLRKQALQDALALYKMFNEAAACEVWIDEKEQWLNSMEIPEKLEDLEVVQHRFESLEPE
MNNQASRVAVVNQIARQLIHNGHPSEKEIKAQQDKLNTRWSQFRDLVDLKKDSLNSALGV
QNYHLECNETKSWIREKTKVIESTQELGNDLAGVMALQRKLTGMERDLAAIEDKLGELGK
EGECLATEHPDQAQGIMGRLGEITGVWDEMKGTLKNREESLGEASKLQQFFRELDDFQSW
LSKTQTAIASEDMPNTLTEAEKLLAQHEGIKNEIRNYEEDYQKMRDMGEMVTQGQTDAQY
MFLRQRLQALDTGWNELHKMWENRQNLLSQSHAHQLFLRDTKQAEAFLNNQEYVLAHTEM
PRTLEGAEGAIKKQEDFMTTMDANEEKIKAVVDTGRRLVSDGNVNADRIQEKVDSIDERH
KKNRMMASELLCKLKDNRDLQKFLQDCQELSLWINEKMLTAQDMSYDEARNLHSKWLKHQ
AFMAELQSNKEWLDKIEKDGMQLMAEKPETESMVKEKLAALHKMWDDLESTTQTKAKCLF
DANKAELFTQSCADLDKWLVGVDGQIQSDDYGKDLTSVNILLKKQQMLESQVEVRQKEVE
ELQSQAQVLSQEGKDTDEVDGQRRIVEKKFQQLLDPLRKRKGNLMASREIHQFNRDMEDE
ILWVEERMPLAISTDHGNNLQTVQLLIKKNQTLQKEIQGHQPRCDDIFERSLQVLKDDDD
SLSGEGIHQRLADLRRLWAQILEETGKRHGRLEEAHMAQQYYFDAAEAEAWMSEQELYMM
SEEKAKDEQSSVAMLKKHQILEQAVEDYAETVHQLSQTSRGLTAAGHPESERIGMRQSQV
DKLYAGLKDLSEERRGKLDERFRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTML
QERFREFARDTGNIGQERVDTVNQLADELINSGHTDAATIAEWKDGLNEAWADLLELIDT
RTQILAASFELHKFYHDAKEILNRILDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQAL
GTQVRTLQEDAVRLQSAYAGDKADDIQKREGEVLEAWRTLLEACDGRRVRLLDTGDKFRF
FSLVRDLMLWMEDVIRLIEAQEKPRDVSSVELLMNNHQGIKAEIDARNNSFTNCIELGKS
LLARKHYALEEIKEKLLQLTDKRKDMIDKWEDRWEWLRLVLEVHQFGRDAGVAESWLLGQ
EPYLSSREMGQNVDEVEKLIKRHEAFEKSAATWEERFSALERLTTMELLEVRRQQEEEER
KRNPPPAETQTDDASPQQREGEQVSQNGLPSDQDSPRDNVEESDIVNGVEEPSPGGSPSE
ARKVKPSQAATLPAKSQDSDPANQMEGYLHRKHEWEGHNKKASSRSWHNVYCVINNREMG
FYKDHKSASQGIPYHNQIPISLKDAACEVALDYKKKKHVFKLKATDGNEYLFQANEDEEM
NSWMQAISSAASSKTEMTPSSHSTPASSRAQTLPASVALATESSPGKREKDKEKRFSLFS
KKK
NT seq
7032 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccgtagccgccgatttcgaccacatggagatccagcagcagcagtatagtagc
gacacagtcaacaaccgctgggatgttgacgagtgggacaacgagaacagctcggccagg
ctgtttgaacgctcccgcatcaaggccttagcagatgagcgcgaggcggtgcagaagaag
accttcaccaagtgggtcaactcccacctagccagagtgtcctgcaggatcactgacctc
tatatggacctgagggatggacgtatgctcatcaaactactggaggtcctctctggggag
agactgcccaagcccactaaggggcgcatgcggatccactgcctggagaacgtggacaag
gccctgcagttcctcaaggagcagagggtccatctggagaatatgggctcccacgacatt
gtcgacggcaaccaccgcctcaccctcggcctaatctggaccatcatcctccgcttccag
atccaggacatcagagtggagactgaggacaacaaggagaagaagtctgctaaagatgcc
ctgctgctgtggtgccagatgaagactgcaggatatcccaacgtgaacattcacaacttc
agcaccagctggagagatggcatggccttcaacgccatcctccacaaacacagacctgac
ctgatagactttgacaagctgaagaagtccaacgcccaccacaatctgcagaatgccttc
aacctggcagagcaacacctgggcatccacaagctgctggacgtagaggatatcagcgtg
gaccacccggatgagaagtccgtcatcacctatgttgtgacctactaccactacttctcc
aaaatgaaggctctgaaggtggagggaaaacgtattgggaaggtgctggacaatgccatt
gagacagataacatgattcagaaatatgagagtctggcctctgacctcctggaatggatt
gaacagaccatcatcatcctcaacaaccgcaagtttgccaactccttagtgggggtgcag
caacagcttcaggccttcaacaccttccgattaagccgtggaaaagcccccaagttcaca
gagaagggcaacctggaggttctcctcttcaccattcaaagtaagatgagggccaacaat
cagaaggtctacatgccacgggacggcaaactcatctcagacatcaacaaggcctgggag
aggctggagaagtctgagcatgagagggagctggcgctgaggactgagctgattcgtcag
gagaaactggagcagctggcccgccgcttcgaccgcaaggccgccatgagagagacctgg
ctgagtgaaaaccaacgcctcgtctcgcaggacaactttggcttcgatctgcaggcagtg
gaggctgccaccaaaaagcacgaggccattgagacggacatcggcgcctacgaggagcgt
gtgcaggctgtgctctctgtggccaaggagctggaggcggagaactaccacgacatcaag
cgcgtgactgcgaggaaggacaatgtgttgcgtctgtgggagtacctgctggagctactg
aaggcccggcgcatccggctggagatgaacctgggcctgcagagggtctttcaagagatg
ctccacatcatggactggatggatgagatgaagatgctgctgctgtcccaggactatggg
aaacacctgctgggagtggaggacctgctgcagaagcatgctctggtggaggctgatatc
gccatacaagccaaccgcgtcaaagccgtcaacaacaacgctcagaagttcgccatcgac
gcagagggctacaagccctgtgacccccaggtgatccgagaccgcatggcccacatggag
ttctgctacgcagagctgagccagctggccgccgatcgctgcgcccgcctggaggagtcc
cgccgcctctggaagttcttctgggagatggccgaggaggagggctggatccgggagaag
gaacagatcctgtcctcggaggactgtggcaaggacctgacgggggccgtgcgcctgctg
agccagcatcgtgccttcgaggacgagatgagcggtcgcgctggccacttgcagcagacc
atcaaacagggagaggagctggtggccgccgaccacttcggagctgacaagatccgcaaa
cgcatccaagacatccaggcgcagtgggcggccctggaggggctgtctgcagtcaggaag
gcccggctggaggaggcctgcaacctgcaccagttccaggctgacgccgatgacattgat
gcctggatgctggatgttctccgcatcgtgtccagtgctgacgttggccacgacgagttc
tccacccaggccctggtcaagaagcacaaggacgtggccgaggagatcaccagctaccga
ccagtcattgacgccctgcacgagcagtccaaaaccctacccaaggagcaaactggctca
gaggaggtgcaggggcgcctggcaggcattgaggagcgctacaaggaggtggctgagctg
acccggctaaggaaacaggccctgcaggatgccctggccctctataagatgttcaatgag
gcggccgcctgtgaggtgtggatcgatgagaaggagcagtggctcaacagtatggagata
ccagagaaactggaagatctggaagtggttcagcacaggtttgagagtctggagccagag
atgaacaaccaagcatcccgtgttgccgtggtgaaccagattgctaggcaactcatccac
aacggtcaccccagtgagaaggagatcaaagcccaacaggacaaactcaacaccagatgg
agccagttccgtgacctagttgacctgaagaaagactccctcaactcagctctgggtgtg
cagaactaccacctggagtgcaatgaaaccaagtcgtggatccgtgagaagaccaaggtt
atcgagtccacccaggagctgggcaacgatcttgccggggtcatggccctacagcgcaaa
ctcaccggcatggaacgtgacctggctgccatcgaggacaagctgggagaactggggaag
gagggggagtgcctggcgactgagcaccctgaccaggctcagggcatcatgggtcgtctg
ggggagatcacaggggtgtgggatgagatgaagggcaccttgaagaatcgcgaggagtct
cttggcgaggccagcaagctgcagcagttcttccgggagctggatgacttccaatcatgg
ctgtccaagacccagacggccatcgcctcagaggacatgcccaacacactgacggaggcc
gagaagcttctggcgcagcatgagggcatcaagaacgagatccgcaactacgaggaggac
taccagaagatgagggacatgggcgagatggtgacccagggccagacggacgcccagtac
atgttcctgaggcagaggctgcaggccctcgacacgggctggaacgagctgcacaagatg
tgggagaaccgtcagaacctactgtcccagtcccatgcccaccagctgttcctcagggac
accaagcaggctgaggccttcctcaacaaccaggagtatgtgctggcccatacagagatg
cccaggactctggagggggcggagggagccattaagaagcaggaggacttcatgaccacc
atggacgccaacgaggagaagatcaaagctgtggtggacaccggacgcaggctggtcagc
gatggaaatgtcaacgctgaccgcatccaggagaaagtggactctatcgatgagagacat
aagaagaaccgcatgatggccagtgagcttctctgtaagctgaaggataacagagacctg
cagaagttcctccaggactgccaagagctctccctgtggatcaatgagaagatgctcaca
gctcaggacatgtcgtacgacgaagccagaaacctccacagcaaatggctcaaacaccag
gcgttcatggccgagctgcagtccaacaaggagtggctggacaagatcgagaaggatgga
atgcagctgatggctgagaagccggagactgagtccatggtgaaggaaaagctggcagcg
ctccataagatgtgggatgacctggagtccaccacccagacgaaggccaagtgtctgttt
gacgccaacaaggccgagctgttcacccagagctgtgccgacctagacaagtggctggta
ggagtggatggacagatccaatcagacgactatggcaaagatctgaccagtgtcaacatc
ctgctcaagaaacaacagatgctggagagccaggtggaggtgcgtcagaaggaggtggag
gagctgcagagccaggcccaggtcctcagccaggaggggaaggatacggacgaggtggac
ggccagcgccgcatcgtggagaagaagttccagcagctgctggaccctctacggaagagg
aagggaaacctcatggcctcccgcgagatccaccagttcaacagagacatggaggatgag
atcctctgggttgaagagcgaatgccacttgcaatatcaacagaccacggaaacaacctg
caaacagtccagttactcatcaagaaaaaccagaccctgcagaaggagatccagggccac
cagccccgttgtgatgacatctttgagcggagtctgcaggtcctcaaggatgatgacgac
agcctcagcggcgaggggatccatcagcggctggccgacctgcggcgcctgtgggcccag
attctggaggagacgggtaaacgccacggacgcctggaggaggcccacatggcccaacag
tactactttgatgctgctgaagccgaggcctggatgagcgagcaggagctctacatgatg
tcagaggagaaagccaaggatgagcagagctctgtggccatgttgaagaagcaccaaata
ctggagcaggctgtggaagactacgctgaaactgtccaccagctctcccagacaagtaga
ggcctgacggctgccggacaccctgaaagtgagcggatcggcatgcgtcagtctcaggtg
gataagctgtacgcggggctcaaggacctgtcggaggagaggagggggaagctggacgag
aggttccgtctgttccagctcaacagggaggtggatgacctggagcagtggatcgctgaa
agggaagtagtggctgggtcacatgagctgggacaggactacgaacatgtcacgatgctt
caggagcgtttccgtgagtttgctcgtgatacgggcaacatcggtcaggagcgtgtggac
accgtcaaccagttggcggatgagctcatcaactcaggccacaccgacgcggcaacaatc
gcggagtggaaggacgggctgaatgaagcgtgggccgacctgctggagctaatcgacaca
cgcacgcagatcctggcggcttcctttgagctgcataagttctaccatgacgccaaggag
atcctcaaccgcatcctggacaaacacaagaagctgcctgaggagctgggccgagaccag
aacacagtggagaccctgcagaggatgcacaccacctttgaacacgacatccaggcactg
gggacacaggtgaggacgttgcaggaggatgctgtgcgtctgcagtctgcctatgccgga
gacaaggctgatgacatccaaaagagagagggtgaggtgctggaggcctggaggaccctg
ctggaggcctgcgacggccgcagggtcagactgctcgacaccggcgacaagttccgcttc
ttcagcttggtgcgagacctcatgctctggatggaggacgtcatccgcctcatcgaggct
caggagaagcccagggacgtgtcatccgtggagctcctgatgaacaaccaccaaggcatc
aaggctgagatcgacgcccgcaacaacagcttcaccaactgcatcgagctgggcaagtcc
ctgttggcaaggaaacactacgcattagaggagatcaaagagaagttactacagttgaca
gacaaaaggaaagacatgattgacaagtgggaagacagatgggagtggctaagattggtt
ctggaggtgcaccagtttggtagggatgcgggtgtggctgagtcatggctgctgggacag
gagccgtacctgtccagcagggagatggggcagaatgtggacgaggtggagaaactcatc
aagagacacgaggcctttgagaagtccgctgccacctgggaggagcgcttctcagcgctg
gaacggctgactacgatggaattactggaggtgagaagacagcaagaggaggaagagagg
aagaggaatccgccacctgcagagacccagacggacgatgcatcgccacagcagagggag
ggtgagcaggtgtctcagaacggactgccatcggaccaggactctcctcgggacaatgta
gaggaaagtgacatcgttaatggggtggaggagcccagcccaggcgggtcgcccagtgaa
gcacgcaaggtcaagcccagccaggctgccacactcccggccaagtcccaggactcagac
ccagccaaccagatggaaggctacctgcaccgcaaacacgagtgggagggtcacaacaag
aaggcatccagcagatcctggcacaatgtgtattgcgtgatcaacaaccgggagatgggc
ttctacaaagaccataagagtgccagccaagggatcccttaccacaaccagatccccatc
agcctgaaggatgctgcgtgtgaggttgccctcgactacaagaagaagaaacatgtgttc
aaactgaaagctacagatggcaatgagtatctcttccaagccaacgaggatgaggagatg
aactcgtggatgcaagccatctccagcgctgcgtcctctaagacagagatgacccccagc
agccatagcacccccgcctccagccgagcccagaccctgcccgcctccgtcgccctggca
actgagtccagccctggcaagcgtgagaaggacaaagaaaagcgcttcagccttttcagc
aaaaagaaatag
DBGET
integrated database retrieval system
