Oncorhynchus tshawytscha (Chinook salmon): 112253128
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Entry
112253128 CDS
T05605
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
112253128
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
otw04812
]
112253128
Cytoskeleton proteins [BR:
otw04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
112253128
Intermediate filaments
Intermediate filament-binding proteins
112253128
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
PH_11
PH_13
CH_2
SOS1_NGEF_PH
Motif
Other DBs
NCBI-GeneID:
112253128
NCBI-ProteinID:
XP_024280846
LinkDB
All DBs
Position
LG06:complement(78367150..78491388)
Genome browser
AA seq
2343 aa
AA seq
DB search
MTSVAADFDHMEIQQQQYSSDTVNNRWDVDEWDNENSSARLFERSRIKALADEREAVQKK
TFTKWVNSHLARVSCRITDLYMDLRDGRMLIKLLEVLSGERLPKPTKGRMRIHCLENVDK
ALQFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDIRVETEDNKEKKSAKDA
LLLWCQMKTAGYPNVNIHNFSTSWRDGMAFNAILHKHRPDLIDFDKLKKSNAHHNLQNAF
NLAEQHLGIHKLLDVEDISVDHPDEKSVITYVVTYYHYFSKMKALKVEGKRIGKVLDNAI
ETDNMIQKYESLASDLLEWIEQTIIILNNRKFANSLVGVQQQLQAFNTFRLSRGKAPKFT
EKGNLEVLLFTIQSKMRANNQKVYMPRDGKLISDINKAWERLEKSEHERELALRTELIRQ
EKLEQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLQAVEAATKKHEAIETDIGAYEER
VQAVLSVAKELEAENYHDIKRVTARKDNVLRLWEYLLELLKARRIRLEMNLGLQRVFQEM
LHIMDWMDEMKMLLLSQDYGKHLLGVEDLLQKHALVEADIAIQANRVKAVNNNAQKFAID
AEGYKPCDPQVIRDRMAHMEFCYAELSQLAADRCARLEESRRLWKFFWEMAEEEGWIREK
EQILSSEDCGKDLTGAVRLLSQHRAFEDEMSGRAGHLQQTIKQGEELVAADHFGADKIRK
RIQDIQAQWAALEGLSAVRKARLEEACNLHQFQADADDIDAWMLDVLRIVSSADVGHDEF
STQALVKKHKDVAEEITSYRPVIDALHEQSKTLPKEQTGSEEVQGRLAGIEERYKEVAEL
TRLRKQALQDALALYKMFNEAAACEVWIDEKEQWLNSMEIPEKLEDLEVVQHRFESLEPE
MNNQASRVAVVNQIARQLIHNGHPSEKEIKAQQDKLNTRWSQFRDLVDLKKDSLNSALGV
QNYHLECNETKSWIREKTKVIESTQELGNDLAGVMALQRKLTGMERDLAAIEDKLGELGK
EGECLATEHPDQAQGIMGRLGEITGVWDEMKGTLKNREESLGEASKLQQFFRELDDFQSW
LSKTQTAIASEDMPNTLTEAEKLLAQHEGIKNEIRNYEEDYQKMRDMGEMVTQGQTDAQY
MFLRQRLQALDTGWNELHKMWENRQNLLSQSHAHQLFLRDTKQAEAFLNNQEYVLAHTEM
PRTLEGAEGAIKKQEDFMTTMDANEEKIKAVVDTGRRLVSDGNVNADRIQEKVDSIDERH
KKNRMMASELLCKLKDNRDLQKFLQDCQELSLWINEKMLTAQDMSYDEARNLHSKWLKHQ
AFMAELQSNKEWLDKIEKDGMQLMAEKPETESMVKEKLAALHKMWDDLESTTQTKAKCLF
DANKAELFTQSCADLDKWLVGVDGQIQSDDYGKDLTSVNILLKKQQMLESQVEVRQKEVE
ELQSQAQVLSQEGKDTDEVDGQRRIVEKKFQQLLDPLRKRKGNLMASREIHQFNRDMEDE
ILWVEERMPLAISTDHGNNLQTVQLLIKKNQTLQKEIQGHQPRCDDIFERSLQVLKDDDD
SLSGEGIHQRLADLRRLWAQILEETGKRHGRLEEAHMAQQYYFDAAEAEAWMSEQELYMM
SEEKAKDEQSSVAMLKKHQILEQAVEDYAETVHQLSQTSRGLTAAGHPESERIGMRQSQV
DKLYAGLKDLSEERRGKLDERFRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTML
QERFREFARDTGNIGQERVDTVNQLADELINSGHTDAATIAEWKDGLNEAWADLLELIDT
RTQILAASFELHKFYHDAKEILNRILDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQAL
GTQVRTLQEDAVRLQSAYAGDKADDIQKREGEVLEAWRTLLEACDGRRVRLLDTGDKFRF
FSLVRDLMLWMEDVIRLIEAQEKPRDVSSVELLMNNHQGIKAEIDARNNSFTNCIELGKS
LLARKHYALEEIKEKLLQLTDKRKDMIDKWEDRWEWLRLVLEVHQFGRDAGVAESWLLGQ
EPYLSSREMGQNVDEVEKLIKRHEAFEKSAATWEERFSALERLTTMELLEVRRQQEEEER
KRNPPPAETQTDDASPQQREGEQVSQNGLPSDQDSPRDNVEESDIVNGVEEPSPGGSPSE
ARKVKPSQAATLPAKSQDSDPANQMEGYLHRKHEWEGHNKKASSRSWHNVYCVINNREMG
FYKDHKSASQGIPYHNQIPISLKDAACEVALDYKKKKHVFKLKATDGNEYLFQANEDEEM
NSWMQAISSAASSKTEMTPSSHSTPASSRAQTLPASVALATESSPGKREKDKEKRFSLFS
KKK
NT seq
7032 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccgtagccgccgatttcgaccacatggagatccagcagcagcagtatagtagc
gacacagtcaacaaccgctgggatgttgacgagtgggacaacgagaacagctcggccagg
ctgtttgaacgctcccgcatcaaggccttagcagatgagcgcgaggcggtgcagaagaag
accttcaccaagtgggtcaactcccacctagccagagtgtcctgcaggatcactgacctc
tatatggacctgagggatggacgtatgctcatcaaactactggaggtcctctctggggag
agactgcccaagcccactaaggggcgcatgcggatccactgcctggagaacgtggacaag
gccctgcagttcctcaaggagcagagggtccatctggagaatatgggctcccacgacatt
gtcgacggcaaccaccgcctcaccctcggcctaatctggaccatcatcctccgcttccag
atccaggacatcagagtggagactgaggacaacaaggagaagaagtctgctaaagatgcc
ctgctgctgtggtgccagatgaagactgcaggatatcccaacgtgaacattcacaacttc
agcaccagctggagagatggcatggccttcaacgccatcctccacaaacacagacctgac
ctgatagactttgacaagctgaagaagtccaacgcccaccacaatctgcagaatgccttc
aacctggcagagcaacacctgggcatccacaagctgctggacgtagaggatatcagcgtg
gaccacccggatgagaagtccgtcatcacctatgttgtgacctactaccactacttctcc
aaaatgaaggctctgaaggtggagggaaaacgtattgggaaggtgctggacaatgccatt
gagacagataacatgattcagaaatatgagagtctggcctctgacctcctggaatggatt
gaacagaccatcatcatcctcaacaaccgcaagtttgccaactccttagtgggggtgcag
caacagcttcaggccttcaacaccttccgattaagccgtggaaaagcccccaagttcaca
gagaagggcaacctggaggttctcctcttcaccattcaaagtaagatgagggccaacaat
cagaaggtctacatgccacgggacggcaaactcatctcagacatcaacaaggcctgggag
aggctggagaagtctgagcatgagagggagctggcgctgaggactgagctgattcgtcag
gagaaactggagcagctggcccgccgcttcgaccgcaaggccgccatgagagagacctgg
ctgagtgaaaaccaacgcctcgtctcgcaggacaactttggcttcgatctgcaggcagtg
gaggctgccaccaaaaagcacgaggccattgagacggacatcggcgcctacgaggagcgt
gtgcaggctgtgctctctgtggccaaggagctggaggcggagaactaccacgacatcaag
cgcgtgactgcgaggaaggacaatgtgttgcgtctgtgggagtacctgctggagctactg
aaggcccggcgcatccggctggagatgaacctgggcctgcagagggtctttcaagagatg
ctccacatcatggactggatggatgagatgaagatgctgctgctgtcccaggactatggg
aaacacctgctgggagtggaggacctgctgcagaagcatgctctggtggaggctgatatc
gccatacaagccaaccgcgtcaaagccgtcaacaacaacgctcagaagttcgccatcgac
gcagagggctacaagccctgtgacccccaggtgatccgagaccgcatggcccacatggag
ttctgctacgcagagctgagccagctggccgccgatcgctgcgcccgcctggaggagtcc
cgccgcctctggaagttcttctgggagatggccgaggaggagggctggatccgggagaag
gaacagatcctgtcctcggaggactgtggcaaggacctgacgggggccgtgcgcctgctg
agccagcatcgtgccttcgaggacgagatgagcggtcgcgctggccacttgcagcagacc
atcaaacagggagaggagctggtggccgccgaccacttcggagctgacaagatccgcaaa
cgcatccaagacatccaggcgcagtgggcggccctggaggggctgtctgcagtcaggaag
gcccggctggaggaggcctgcaacctgcaccagttccaggctgacgccgatgacattgat
gcctggatgctggatgttctccgcatcgtgtccagtgctgacgttggccacgacgagttc
tccacccaggccctggtcaagaagcacaaggacgtggccgaggagatcaccagctaccga
ccagtcattgacgccctgcacgagcagtccaaaaccctacccaaggagcaaactggctca
gaggaggtgcaggggcgcctggcaggcattgaggagcgctacaaggaggtggctgagctg
acccggctaaggaaacaggccctgcaggatgccctggccctctataagatgttcaatgag
gcggccgcctgtgaggtgtggatcgatgagaaggagcagtggctcaacagtatggagata
ccagagaaactggaagatctggaagtggttcagcacaggtttgagagtctggagccagag
atgaacaaccaagcatcccgtgttgccgtggtgaaccagattgctaggcaactcatccac
aacggtcaccccagtgagaaggagatcaaagcccaacaggacaaactcaacaccagatgg
agccagttccgtgacctagttgacctgaagaaagactccctcaactcagctctgggtgtg
cagaactaccacctggagtgcaatgaaaccaagtcgtggatccgtgagaagaccaaggtt
atcgagtccacccaggagctgggcaacgatcttgccggggtcatggccctacagcgcaaa
ctcaccggcatggaacgtgacctggctgccatcgaggacaagctgggagaactggggaag
gagggggagtgcctggcgactgagcaccctgaccaggctcagggcatcatgggtcgtctg
ggggagatcacaggggtgtgggatgagatgaagggcaccttgaagaatcgcgaggagtct
cttggcgaggccagcaagctgcagcagttcttccgggagctggatgacttccaatcatgg
ctgtccaagacccagacggccatcgcctcagaggacatgcccaacacactgacggaggcc
gagaagcttctggcgcagcatgagggcatcaagaacgagatccgcaactacgaggaggac
taccagaagatgagggacatgggcgagatggtgacccagggccagacggacgcccagtac
atgttcctgaggcagaggctgcaggccctcgacacgggctggaacgagctgcacaagatg
tgggagaaccgtcagaacctactgtcccagtcccatgcccaccagctgttcctcagggac
accaagcaggctgaggccttcctcaacaaccaggagtatgtgctggcccatacagagatg
cccaggactctggagggggcggagggagccattaagaagcaggaggacttcatgaccacc
atggacgccaacgaggagaagatcaaagctgtggtggacaccggacgcaggctggtcagc
gatggaaatgtcaacgctgaccgcatccaggagaaagtggactctatcgatgagagacat
aagaagaaccgcatgatggccagtgagcttctctgtaagctgaaggataacagagacctg
cagaagttcctccaggactgccaagagctctccctgtggatcaatgagaagatgctcaca
gctcaggacatgtcgtacgacgaagccagaaacctccacagcaaatggctcaaacaccag
gcgttcatggccgagctgcagtccaacaaggagtggctggacaagatcgagaaggatgga
atgcagctgatggctgagaagccggagactgagtccatggtgaaggaaaagctggcagcg
ctccataagatgtgggatgacctggagtccaccacccagacgaaggccaagtgtctgttt
gacgccaacaaggccgagctgttcacccagagctgtgccgacctagacaagtggctggta
ggagtggatggacagatccaatcagacgactatggcaaagatctgaccagtgtcaacatc
ctgctcaagaaacaacagatgctggagagccaggtggaggtgcgtcagaaggaggtggag
gagctgcagagccaggcccaggtcctcagccaggaggggaaggatacggacgaggtggac
ggccagcgccgcatcgtggagaagaagttccagcagctgctggaccctctacggaagagg
aagggaaacctcatggcctcccgcgagatccaccagttcaacagagacatggaggatgag
atcctctgggttgaagagcgaatgccacttgcaatatcaacagaccacggaaacaacctg
caaacagtccagttactcatcaagaaaaaccagaccctgcagaaggagatccagggccac
cagccccgttgtgatgacatctttgagcggagtctgcaggtcctcaaggatgatgacgac
agcctcagcggcgaggggatccatcagcggctggccgacctgcggcgcctgtgggcccag
attctggaggagacgggtaaacgccacggacgcctggaggaggcccacatggcccaacag
tactactttgatgctgctgaagccgaggcctggatgagcgagcaggagctctacatgatg
tcagaggagaaagccaaggatgagcagagctctgtggccatgttgaagaagcaccaaata
ctggagcaggctgtggaagactacgctgaaactgtccaccagctctcccagacaagtaga
ggcctgacggctgccggacaccctgaaagtgagcggatcggcatgcgtcagtctcaggtg
gataagctgtacgcggggctcaaggacctgtcggaggagaggagggggaagctggacgag
aggttccgtctgttccagctcaacagggaggtggatgacctggagcagtggatcgctgaa
agggaagtagtggctgggtcacatgagctgggacaggactacgaacatgtcacgatgctt
caggagcgtttccgtgagtttgctcgtgatacgggcaacatcggtcaggagcgtgtggac
accgtcaaccagttggcggatgagctcatcaactcaggccacaccgacgcggcaacaatc
gcggagtggaaggacgggctgaatgaagcgtgggccgacctgctggagctaatcgacaca
cgcacgcagatcctggcggcttcctttgagctgcataagttctaccatgacgccaaggag
atcctcaaccgcatcctggacaaacacaagaagctgcctgaggagctgggccgagaccag
aacacagtggagaccctgcagaggatgcacaccacctttgaacacgacatccaggcactg
gggacacaggtgaggacgttgcaggaggatgctgtgcgtctgcagtctgcctatgccgga
gacaaggctgatgacatccaaaagagagagggtgaggtgctggaggcctggaggaccctg
ctggaggcctgcgacggccgcagggtcagactgctcgacaccggcgacaagttccgcttc
ttcagcttggtgcgagacctcatgctctggatggaggacgtcatccgcctcatcgaggct
caggagaagcccagggacgtgtcatccgtggagctcctgatgaacaaccaccaaggcatc
aaggctgagatcgacgcccgcaacaacagcttcaccaactgcatcgagctgggcaagtcc
ctgttggcaaggaaacactacgcattagaggagatcaaagagaagttactacagttgaca
gacaaaaggaaagacatgattgacaagtgggaagacagatgggagtggctaagattggtt
ctggaggtgcaccagtttggtagggatgcgggtgtggctgagtcatggctgctgggacag
gagccgtacctgtccagcagggagatggggcagaatgtggacgaggtggagaaactcatc
aagagacacgaggcctttgagaagtccgctgccacctgggaggagcgcttctcagcgctg
gaacggctgactacgatggaattactggaggtgagaagacagcaagaggaggaagagagg
aagaggaatccgccacctgcagagacccagacggacgatgcatcgccacagcagagggag
ggtgagcaggtgtctcagaacggactgccatcggaccaggactctcctcgggacaatgta
gaggaaagtgacatcgttaatggggtggaggagcccagcccaggcgggtcgcccagtgaa
gcacgcaaggtcaagcccagccaggctgccacactcccggccaagtcccaggactcagac
ccagccaaccagatggaaggctacctgcaccgcaaacacgagtgggagggtcacaacaag
aaggcatccagcagatcctggcacaatgtgtattgcgtgatcaacaaccgggagatgggc
ttctacaaagaccataagagtgccagccaagggatcccttaccacaaccagatccccatc
agcctgaaggatgctgcgtgtgaggttgccctcgactacaagaagaagaaacatgtgttc
aaactgaaagctacagatggcaatgagtatctcttccaagccaacgaggatgaggagatg
aactcgtggatgcaagccatctccagcgctgcgtcctctaagacagagatgacccccagc
agccatagcacccccgcctccagccgagcccagaccctgcccgcctccgtcgccctggca
actgagtccagccctggcaagcgtgagaaggacaaagaaaagcgcttcagccttttcagc
aaaaagaaatag
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integrated database retrieval system
