Oncorhynchus tshawytscha (Chinook salmon): 112253134
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Entry
112253134 CDS
T05605
Name
(RefSeq) ubiquitin-40S ribosomal protein S27a
KO
K02977
ubiquitin-small subunit ribosomal protein S27Ae
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03010
Ribosome
otw04120
Ubiquitin mediated proteolysis
otw04137
Mitophagy - animal
otw04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03010 Ribosome
112253134
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112253134
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112253134
04137 Mitophagy - animal
112253134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03011 Ribosome [BR:
otw03011
]
112253134
04121 Ubiquitin system [BR:
otw04121
]
112253134
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112253134
Ribosome [BR:
otw03011
]
Ribosomal proteins
Eukaryotes
Small subunit
112253134
Archaea
112253134
Ubiquitin system [BR:
otw04121
]
Ubiquitins and ubiquitin-like proteins
Ubiquitins
112253134
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
112253134
Exosomal proteins of colorectal cancer cells
112253134
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ubiquitin
Ribosomal_S27
Rad60-SLD
Ubiquitin_2
Rad60-SLD_2
DUF2604
Dsc3_N
TBK1_ULD
Ubiquitin_5
OTU1_UBXL
Motif
Other DBs
NCBI-GeneID:
112253134
NCBI-ProteinID:
XP_024280862
LinkDB
All DBs
Position
LG06:complement(78197009..78199612)
Genome browser
AA seq
156 aa
AA seq
DB search
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKIHRLRRE
CPADECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK
NT seq
471 nt
NT seq
+upstream
nt +downstream
nt
atgcagatttttgtcaaaaccctcacggggaagactataaccctcgaggttgagccttca
gataccattgaaaatgttaaagctaagattcaagacaaagaaggtatccctcctgatcag
cagaggttgatcttcgctggtaagcagctggaggatggacgcacactgtctgactacaac
attcagaaggagtccactctgcacttggtgctgagactgcgtgggggtgccaagaagagg
aagaagaagtcctacaccactcccaagaagaacaagcacaagaggaagaaggtcaaactc
gcagttctcaagtactacaaggttgacgaaaacggcaagatccaccgtctgcgtcgtgag
tgcccagctgatgagtgtggcgctggtgtgttcatggccagccactttgataggcactac
tgtggaaagtgctgcctcacctactgcttcaacaagcctgaggacaagtaa
DBGET
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