Oncorhynchus tshawytscha (Chinook salmon): 112253160
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Entry
112253160 CDS
T05605
Symbol
nphp1
Name
(RefSeq) nephrocystin-1 isoform X1
KO
K19657
nephrocystin-1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
otw03037
]
112253160 (nphp1)
Cilium and associated proteins [BR:
otw03037
]
Primary cilia and associated proteins
Nephronophthisis-related proteins
112253160 (nphp1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH3_9
SH3_1
SH3_2
hSH3
NMD_SH3
Pox_Ag35
BSP_II
BUD22
SH3_3
FAM176
RNA_pol_3_Rpc31
Motif
Other DBs
NCBI-GeneID:
112253160
NCBI-ProteinID:
XP_024280912
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All DBs
Position
LG16:29660925..29685945
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AA seq
667 aa
AA seq
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MPPKRQGPLQTVQRETDDIKRQVDSLIKDARLSDGSGRTEAYQSRCIHLQNLVEETTRKL
KKLTKADEPAPVGNYEQRKMEEERRLRGFEEKLLVLVQELSPPQKREGGSSQAQEDEEEE
DSEEDSEEDSEEEESEEESVEDEEEDDDEEDVVTKTMEQIPESGTATYMVISAFKGEQEG
DLTIQMGEVLAILSKNEDGWWLAQDSKGSKGLVPKTYLKRYSDQEEDDEETSEDEELESK
RKQSSNWDCVRRAITEIDATDVLSAMGAIPAGFRSSTLSKLLDEGITYRASHYIQPELSQ
SKLSFKDLFRDPDTGKVRQRTARTSLTLTLWSCKSIPTPGVGVQVLSRHIRLCAFDGTQV
LSNIHTIRATCNANNVKTWSFSPRMTGNLPSLLDGDCFLRCNSDAPELGILFELGVTYIR
NSTGERGDLSCGWAFLKLFDTNGAPVPHRTYELLVHGGTPYEKDVEVDPSLTRGATGTGM
FQQMMLSRKLPKLFLKLKSPNVRTRSQLSALPDTLVGSLSSIHLLVLHRQLLADILLMDR
ATMQNADLICSPLLATFPEIMDQSDLLDALRKSWLEAESNMKRSEKRDLPLLKRTFVRVY
MDNIYPLLYSADLPPPRWADEMVENQRARVIFNSSLEPFHTHTPDSPPRHQAFDISQLTY
DLLCMAQ
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgccaccaaaaagacaagggcctcttcaaacagtgcaaagagagacggatgatatcaaa
agacaggttgacagtctgataaaagatgcacggctgtcggatgggtcagggcgcacagag
gcatatcagagccgatgcatacatctacaaaacttagtggaggagacaaccaggaagctc
aagaagttaaccaaggctgatgagccagccccagtggggaattacgaacagagaaagatg
gaggaggaaagacgtctgcgggggtttgaggagaagctgctggtcctagtccaggagctc
tctccgcctcagaaacgtgagggagggtcatcccaagcccaggaagatgaagaggaggaa
gacagtgaggaagacagtgaagaagacagtgaggaagaggagagtgaagaggagagtgta
gaagatgaggaagaagatgatgatgaggaagatgtagtcacaaagaccatggaacaaatt
ccagagtcaggcactgccacgtacatggtcatcagtgcctttaaaggagagcaggaagga
gatcttaccattcagatgggtgaggtcctggcgattctcagtaaaaatgaggatggctgg
tggcttgctcaggactcaaagggcagtaagggactagtccccaaaacctacttgaagaga
tattcagaccaggaagaggatgatgaggaaacgtcagaggatgaggagcttgagtccaaa
aggaagcagagctcaaactgggactgtgtgaggagagccatcactgagattgatgctact
gatgttctgtcagccatgggtgccatccctgctgggttcaggtcatccaccctctctaaa
ctactagatgaggggattacctacagagcaagtcactacatccaaccagagttgagccaa
tccaaactgtccttcaaagacctcttccgggacccagacactggaaaagttcgtcagagg
acagcgaggacgtccctcactctgactctgtggagctgcaagagtatccccaccccaggg
gtcggagttcaagtcctcagtcggcacatccgcctctgtgctttcgacggtactcaggtt
cttagtaacatccacaccatccgagccacttgcaatgcaaacaacgtcaagacctggtcc
ttttctccccggatgactgggaatctacccagccttttggacggggactgttttctgagg
tgcaactcggacgctcctgagctgggaatattatttgaacttggagtcacatacatccga
aattctacaggtgagagaggagacctgagctgtggctgggccttcctgaagctctttgac
accaacggagcacctgtcccacacaggacctatgaattgcttgtgcatggaggcacaccg
tatgaaaaggacgtagaggtagatccatctttaacaagaggagccacaggaacaggcatg
ttccagcagatgatgttgtccaggaaactccctaaactcttcctcaaactgaaatcgcca
aacgttcgtacaaggtcacagctgagtgctcttccagacactctagtgggcagtctctcc
agtatacatctgctggttctgcacagacaactactggcagatattctgcttatggacagg
gcaaccatgcagaatgcagatctgatctgtagtcctctgctggccaccttcccagagatc
atggaccaatcggacctgctggatgccctgaggaagtcttggttggaggctgagagcaat
atgaagagatctgaaaagagggacctacctctgctgaagaggacgtttgtgagggtatac
atggacaacatctatcctctcctatactcggctgacttgccccctcctcgctgggctgat
gagatggtggagaaccagcgggcacgagtcatcttcaacagttctctagaaccattccac
acacacaccccggacagcccccctcgccaccaagcctttgacatctcacagctcacctat
gacctcctctgcatggcccaatag
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