Oncorhynchus tshawytscha (Chinook salmon): 112253220
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Entry
112253220 CDS
T05605
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112253220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112253220
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
112253220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
112253220
NCBI-ProteinID:
XP_042177269
LinkDB
All DBs
Position
LG05:3201677..3277193
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AA seq
709 aa
AA seq
DB search
MSRHRNVRGYNYDEDLDDDDLYGQSVDDDYCISPATAAQFIYSSRQERPNVEPPLEEEEM
EEDEAIHTSPTLTHNLNPLDQGKLYSCLDLMRAVLGDAMPESVLTQAALRCAFDPQRALD
AVLSVESAGLPPLDARTNNDAPLPQRANKETAVVPRANQEASAAPRPEKAKDREAGQCQL
DSEVLPKVARMTVSGKKQTMGFDVPSTVENGVVPSPSVHRGGSPDDMTMKTSPETPSKRP
ETPSKGFGGAEEPPSVPTPGRTPGKAKQQLNVRAELEKRQGGKSLLNLVVIGHVDAGKST
LMGHLLYLLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERNRGVTMDVGMTKFET
ASKVVTLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFEAGGQTREHGLLVRS
LGVTQLAVAVNKMDQVNWQQERFKEIISKLGHFLKQAGFKDSDVFYVPTSGLSGENLTTK
SSALALTSWYSGPCLLEQIDYFKPPQRSIEKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQ
TGDRVLAMPPNETCTVKGISLHDDPLDWAAAGDHVSLTVTGMDIIKINVGCVFCDIKEPI
RACSRFRARVLLFNIEVPITQGFPVVLHYQTISEPATIRKLVSVLHKSSGEVLKKKPKCL
GKGMNAMVEIQTQRPVALELYKDFKELGRFMLRYVGSTIAAGVVTEIKE
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggcacagaaatgtccgaggctacaactatgatgaagaccttgacgatgacgat
ctgtatggacagtctgttgacgatgactactgcatctcccctgctacagcagcccagttc
atctactccagcaggcaggagagacccaacgttgagccacccctagaggaggaggagatg
gaggaagatgaggccatacacacctctcccaccctcacacacaacctgaaccccctggac
caaggcaagttgtactcgtgtctggacctgatgcgtgcggtgctgggtgatgccatgcca
gagtcggtccttacccaggctgccttgcggtgcgccttcgaccctcagagagccttggac
gccgttctctcagtcgagagcgccgggctgccgcccctggacgccaggaccaataatgac
gcaccgctgccgcagagagcaaataaggagacagcagttgtaccaagagccaatcaggaa
gcctcagctgcaccgcgaccagagaaagctaaggaccgtgaggcggggcagtgtcaactg
gactcagaagttctgccaaaagtggcccgcatgaccgtctcagggaagaaacagaccatg
ggctttgacgtgccgagtacagtggagaacggggttgttcccagcccctccgtccatcgt
gggggtagccctgatgacatgaccatgaaaaccagccccgaaaccccctccaagcgtccg
gagacaccctctaaagggttcgggggggcagaggagcccccttccgtccccaccccagga
cgtaccccggggaaggccaagcaacagctgaacgtcagggccgagctggagaagagacaa
gggggcaagtctctactcaacctggtggttataggtcatgtggatgctgggaagagcact
ctgatgggtcacctgctgtacctgttgggaaacgtcaataaacgcaccatgcacaagtac
gaacaggagtccaaaaaggctggcaaggcctcgttcgcctacgcatgggtcctggatgag
accggggaggagaggaacaggggtgtaaccatggacgtggggatgacaaagtttgagacg
gcctctaaggtggtgactctgatggacgcccctggacacaaagacttcatccctaacatg
atcactggagcggcccaggcggacgtggctgtgttagtggtagatgccagcagaggtgag
tttgaggcagggttcgaggcaggtggtcagacgcgagagcacggccttctggtccgttcg
ttgggagtcacacagctcgctgttgccgtcaacaagatggaccaggtaaactggcaacag
gagcgattcaaagagatcatctctaaacttggacatttcctgaaacaggctggatttaag
gactctgatgtgttctacgtgccgaccagtggtctatcaggagagaacctgaccacgaag
agttctgctctggcgctaacatcctggtactctggaccctgtctgctggaacagatcgat
tatttcaaaccaccccagaggtcgatagaaaagcccttccgactgtgtgtctcggacgtc
ttcaaagatcagggctcagggttctgtgtaacagggaagatcgaggcgggctacattcag
acaggagaccgagtactggccatgccccccaatgagacatgcactgttaaaggtatctct
ctccacgatgatcctctggactgggcagcagcaggagatcatgttagtctgaccgtcact
ggcatggacatcatcaagattaatgtgggctgtgtgttctgtgatattaaggagccaatc
agagcgtgttcccgcttcagggccagagtcctgctcttcaacatagaggtccccatcaca
cagggcttccccgttgtgttgcactaccagacgatcagtgaaccggccaccattaggaag
ctggtcagcgttctgcacaagagcagtggagaggtgctcaagaagaaacccaagtgtctg
ggtaagggtatgaacgcaatggtggagatccagacccagaggcccgtagcgttggagctc
tataaggacttcaaggagctgggacgcttcatgctgagatacgtagggtcaaccatcgct
gccggggtcgtcaccgagatcaaagaatga
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