Oncorhynchus tshawytscha (Chinook salmon): 112253319
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Entry
112253319 CDS
T05605
Symbol
comp
Name
(RefSeq) cartilage oligomeric matrix protein
KO
K04659
thrombospondin 2/3/4/5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04145
Phagosome
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112253319 (comp)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
112253319 (comp)
09144 Cellular community - eukaryotes
04510 Focal adhesion
112253319 (comp)
09142 Cell motility
04820 Cytoskeleton in muscle cells
112253319 (comp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112253319 (comp)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112253319 (comp)
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112253319 (comp)
Membrane trafficking [BR:
otw04131
]
Endocytosis
Phagocytosis
Opsonins
112253319 (comp)
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112253319 (comp)
Exosomal proteins of colorectal cancer cells
112253319 (comp)
Exosomal proteins of bladder cancer cells
112253319 (comp)
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112253319 (comp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
EGF_CA
COMP
EGF_3
EGF
Motif
Other DBs
NCBI-GeneID:
112253319
NCBI-ProteinID:
XP_024281089
LinkDB
All DBs
Position
LG06:complement(16870155..16882009)
Genome browser
AA seq
747 aa
AA seq
DB search
MLWILVLVISLSVSSELVAGQRDGEIINQIKGTNQALAEIKELLKQQIQEIVFLKNTVME
CEACGMQGPSRPSCDPNPCHPGVKCIETAGGIKCGPCPEGMVGNSTRCMDVDECVVKPCH
MGVRCINTSPGFRCGPCPTGYTGPQVQGVSLSYATKNKQVCKDINECEGPKNGGCVENSN
CVNTPGSFRCGLCKAGYAGDQRKGCKPERACGNGQPNPCHASGECIVQRDGKIECQCGVG
WAGNGYFCGSDIDIDGFPDEKQECAERNCAKDNCQTVPNSGQEDADKDGIGDACDEDADG
DGILNTQDNCVLVPNVNQRNVDEDDFGDACDNCRMIKNNDQKDTDIDRLGDECDEDIDGD
GIPNNLDNCKRVPNTDQKDRDGDKVGDACDSCPYVPNPDQLDMDNDLIGDPCDTNKDSDG
DGHQDSQDNCPAVINSAQLDTDKDGLGDECDNDDDNDGIPDLLPPGPDNCRLIPNPLQED
SDGDGVGNLCENDFDNDTIIDSIDVCPENAEVTLTDFRAYQTVVLDPEGDAQIDPNWVVL
DQGREIVQTMNSDPGLAVGYTAFNGVDFEGTFHVNTVTDDDYAGFIFGYQDSSSFYVVMW
KQVEQIYWQANPFRAVAEPGIQLKAVKSNTGPGENLRNSLWHTGDTSDQVKLLWKDARNV
GWKDKTSYRWFLQHRPQDGYIRVRFYEGPQLVADTGIIIDTTMRGGRLGVFCFSQENIIW
ANLRYRCNDTIPGDFDIYQAQQVQLQF
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgctgtggatcctggtgttggtgatttctctcagtgtgagcagtgagctagtagctggt
cagagagatggcgaaatcatcaatcagatcaagggaacaaatcaagctctggctgagatc
aaagaactgctgaaacaacagatccaagagattgtgttcctgaagaacacagtgatggag
tgtgaagcctgtggcatgcaaggtccctctcgcccctcctgtgaccctaacccctgccac
ccgggggtaaagtgcattgaaacagctggcggcatcaagtgtggcccctgccctgagggc
atggtgggcaacagtacccgatgcatggatgtggacgagtgtgtggtgaagccttgccac
atgggtgtgcgctgcataaacacgtccccaggtttccgctgtggcccctgtccaactggc
tacactggccctcaggtgcagggagtaagcctctcctacgccactaaaaacaaacaggtc
tgcaaggacatcaatgagtgcgaaggacccaagaatggaggttgtgtggaaaattccaat
tgtgtaaacacacctggctcgtttaggtgtggcctctgtaaggcaggctatgctggggat
cagcgcaagggctgtaagcctgagagagcatgtggtaatggccagcccaacccctgccat
gccagcggagagtgtattgtccaacgagatgggaaaatagagtgtcagtgtggggtggga
tgggctggcaatggctacttctgcggatctgatattgacattgatggcttccctgatgag
aaacaggaatgcgccgagaggaactgtgccaaggataactgtcaaacggtacccaactct
ggccaagaggacgcagacaaggatggtataggagacgcctgcgatgaggatgcagatggg
gatggaatcttaaatacacaggacaactgtgtgctggtaccaaacgtcaaccaaagaaat
gtggacgaagacgactttggagacgcctgtgacaactgccgtatgatcaaaaacaacgac
cagaaagacactgatattgatagactgggtgacgaatgtgacgaagacattgatggcgac
ggaatccctaacaacctggacaactgcaaaagggttcccaatactgaccagaaggatcga
gacggggacaaagtcggagatgcctgtgacagttgcccttacgttcccaaccctgaccag
ttggatatggacaacgacttgatcggagatccttgtgacaccaataaggacagtgatggt
gacggtcaccaggactctcaggacaactgccctgcagtcatcaacagcgcccagctggac
acggacaaggatggcctgggggacgagtgtgacaatgacgatgacaatgatggtattcct
gaccttctgcccccgggaccggacaactgtcgcctcattcccaaccctctgcaggaggac
tctgacggtgatggggttgggaacctgtgcgagaacgactttgacaacgacaccatcatc
gacagcatcgatgtgtgcccagagaacgctgaggttactctcacagacttcagggcctac
cagacagtggtgctggacccggagggagacgcacagatagaccctaactgggtggtgctc
gatcagggtagagagatcgttcaaactatgaacagtgaccctggactggctgttggttac
acggctttcaacggcgttgacttcgaagggacgttccatgtgaatacggtaacagacgac
gactatgcaggcttcatctttggctaccaggactcttcctccttctacgtagtgatgtgg
aaacaagttgagcagatctactggcaggccaatccgttccgagctgtggcagaaccaggg
atacaactgaaggctgtaaagtccaacacgggaccaggggaaaatctacgtaactccctg
tggcacaccggagacaccagtgaccaggtgaagctgctgtggaaagatgcccgcaacgtg
ggctggaaggacaagacctcctaccgctggttcttgcaacacaggccccaagatggatac
atcagggtgcgtttctatgagggtcctcagctagtggcagacacaggcatcatcatagac
accaccatgagaggaggcagactgggcgtcttttgcttctctcaggagaacatcatctgg
gctaacctacgctaccgctgcaatgatacaatccctggggacttcgatatataccaagcc
caacaggtccagctgcagttctaa
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