Oncorhynchus tshawytscha (Chinook salmon): 112253510
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Entry
112253510 CDS
T05605
Symbol
ercc6
Name
(RefSeq) DNA excision repair protein ERCC-6 isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
112253510 (ercc6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112253510 (ercc6)
03400 DNA repair and recombination proteins [BR:
otw03400
]
112253510 (ercc6)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
112253510 (ercc6)
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
112253510 (ercc6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
Motif
Other DBs
NCBI-GeneID:
112253510
NCBI-ProteinID:
XP_042179372
LinkDB
All DBs
Position
LG06:58290959..58343353
Genome browser
AA seq
1491 aa
AA seq
DB search
MPVEDTENQVPLILSNPASAALTPGGMEEDGANRGTAGCSISITGTSQGDTEQPAMACPD
STGSGEGSSAIKKSGALLHIDRQLIQAVSASSGAAELQGLGVAVYDQDVLEQGVLQQVDQ
AIHEASQAAAKAEAEKEYQSVLDDVRSCMAALKHINKIIEQLTPYATSSKDINRKIESVR
RQKENKEKQLKKIRAKQRRLQAILGGEDTLKIEAELLLEDDVDEEPGPSTLGSMLMPAQE
TEWEELIRTGHMTPFGTRVPQKEEKKEPRKFMLSENSGFDAYLADQAKMAVDRKRPAPLK
QKNKTAVGKEGKKTNEAALPSYSVDKKLQKRMRKLQRTALKAHSKAPAKRVTPIPKPRTK
LQAGGDEMDSEGSEYLPSDELMDPEREEREDRDEGWGEEDEVDYYELKPYRKKSEEKGGG
KKGKRRERDEEYYADSSEEDKGSGKKGKEKMKKDDGDVEFYKQRIRRWRRLRLREREEKR
ERGEEESDQSDAEFDEGFKVPGFLWNKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKT
IQVIAFLAGLSYSKLRTRGSNYRYQGLGPTVIVCPATVMHQWVSEFHTWWPPFRVAVLHD
TGSFTQTKEKLISEMAACHGVLITSYSAVRIMQETLQRYDGWHYVILDEGHKIRNPHAGV
TTACKQFRTPHRFILSGSPMQNNLKELWSLFDFVFPGKLGTLPIFMEQFSVPITMGGYSN
ASPVQVQTAYKCACVLRDTINPYLLRRMKADVKANLSLPDKNEQVLFCRLTEAQREVYQG
YLDSKVVYQILNGDMQVFSGLIALRKMCNHPDLFSGGPKILKGIPEDQLTEEEHFGFWKR
SGKLMVVESLLRLWFKQQHRVLLFTQSRQMLGILEVFVRENGYTYVKMDGTTTIASRQPL
IARYNEDKSIFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKEV
TVYRLLTAGTIEEKIYHRQIFKHFLTNRILKDPKQRRFFKSNDIYELFTLSNPDGTQGTE
TSAIFAGTGSDVQAPKKPVRPRSNHRHSVTNHNVSSTGGGAIPSPSPRPGDKTTPLRSNI
SLNKNNRLTDSQEANQGEADIPIGQSQTECDTQHSREEGSNAHILTDPDRDQNSILTHKH
RDSPVTSPNPHKHSHTNSVSPSTQKQREKHSPHKHRESQGPGPSPYKHREKRKHCDSTVE
GPKNKHGNQKQAKVEGHRISYLVKKRSYKGQEEREEQPEKQDQRQSDDYVLAKLFKKSGI
HSVMQHDSIMEASNPDFVLVEAEANRVAKDALKALKVSRQHCRLPYNQPAPAPARKRFGQ
KKNPLLSAPPATVVPAQDKCKDAAIIKKTIARKPIPGGHFSGEGVEVGGSSSTTAPLSSS
TLLACMKARNHLSLPQREGDEGEEEEGGARIPSGPPAPPTEHDELLVDLRNFVAFQGAVD
GQASTKEVLDHFTPRLTHTQTPVFRELLRNICNFHRAKGQEGTWRLKSDYR
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtagaagatactgagaaccaggttcctcttatcctctccaacccggctagtgct
gctctcaccccgggaggaatggaggaggatggggccaacagaggaaccgctggatgctca
atctccatcactgggaccagccagggggacactgagcagcctgcaatggcctgcccagat
agcactggatctggggagggtagcagtgccattaagaagtctggagccctgctacacatt
gaccgtcagcttatccaggctgtgagtgccagctccggggctgcagagctacagggtctg
ggtgtcgccgtgtacgaccaggatgtgttggagcagggggtcttgcagcaggtggaccag
gccatacacgaagccagccaggctgcagccaaggccgaggcagagaaggagtaccagtct
gtactagacgatgtcaggtcatgtatggcagctctgaagcatattaataagatcatcgag
cagctgactccctatgctacttccagtaaagacattaacaggaagattgagtctgtcaga
cggcagaaagagaacaaggagaagcaattgaagaagatcagagcaaagcagaggagacta
caggccatcctggggggagaagacacactgaagatagaggctgagctgctgctggaggac
gatgtggacgaagagcccggcccatctactctgggcagtatgctgatgccggcacaggag
acggagtgggaggagctaatccggacgggtcacatgacaccgtttggaacgagggtccct
cagaaggaggagaagaaggaaccacgcaagttcatgctgtctgaaaactctggcttcgac
gcttacctcgcggaccaagctaagatggcggtggacaggaagagacctgcacccctaaag
cagaagaacaagactgctgtgggcaaggaagggaaaaagaccaacgaagcggctctcccc
tcctactctgtggataagaagctccagaagcgaatgcgtaagctgcagaggaccgctctg
aaggcccactctaaggccccggctaagagggtcacgccgatccccaagcccaggacgaag
cttcaagctgggggagatgagatggacagcgaggggtctgagtacctccccagtgatgaa
ctgatggaccccgagagagaagagcgggaggaccgagatgagggctggggagaggaggat
gaggttgactactatgagttaaagccctacaggaagaagagtgaagaaaagggggggggg
aagaaggggaaaaggagagagcgtgacgaggagtattacgccgacagctcagaggaagac
aagggttcagggaaaaagggaaaagagaagatgaagaaagacgacggagatgtggagttc
tacaaacagaggatacggcggtggaggcggctgcggctgagagagagggaggagaagaga
gagagaggagaggaggagagtgaccagagtgatgctgagtttgatgaaggattcaaagtg
cctggattcctctggaataaactcttcaagtaccagcagacaggtgtgaggtggctgtgg
gagctacactgccagcaggcagggggaatcctgggggatgagatgggtctgggtaaaacc
atccaagtcatcgcattcctggctggcctcagctacagcaaactacgcacacgagggtcc
aactacaggtaccaaggactaggtcctacagtgatagtgtgtccagctacagtcatgcac
cagtgggtcagtgagtttcacacctggtggcccccattcagagtggctgtcctacacgac
acgggatccttcacccaaacaaaggagaagttgatatcagagatggcagcatgtcatggt
gtcttgataacgtcgtattcagccgtgaggatcatgcaggagaccctgcagagatacgac
ggctggcactacgttatactggacgagggacacaagatccgcaaccctcacgctggagtt
accaccgcctgcaaacagttccgtactcctcataggttcattctatctggcagtcctatg
cagaacaatctgaaggagctgtggagtctatttgactttgtcttccctggcaaactgggc
acgctgcctatttttatggaacagttctctgtaccgatcaccatgggaggctacagcaac
gcttcacctgtacaggtccagacagcgtataagtgtgcgtgtgttctgagggataccatt
aacccttacctgctcagacggatgaaggctgacgtgaaggccaacctctctttacctgac
aagaatgaacaggttttgttttgcaggctaacagaggcgcagcgtgaggtgtatcagggc
tatctggactccaaagtggtctaccaaatactgaatggggatatgcaggtgttctcgggc
ctgatagcactgcgtaagatgtgtaaccacccggacctgttctctgggggtcccaagatc
ctgaagggtataccagaggaccaactgactgaagaggaacactttggcttctggaaacgt
tccggcaaactgatggtggtggaatcactgctccgactttggtttaaacagcaacacaga
gtcctgctgttcacacagtccagacagatgttggggatattggaggtgtttgtgagggag
aatggctacacctatgtgaaaatggatggtaccaccaccatcgcctccagacagcctctc
atcgctcgatataacgaagacaagtctatctttgtgttcttgttgaccaccagagtgggg
gggctgggagtcaacctgaccggagccaaccgagtcatcatctatgaccccgactggaac
cctagcactgacacacaggctcgagagcgagcttggaggatcggtcagaaaaaggaggtg
actgtctatagactactgaccgccgggaccattgaggagaagatctaccacaggcaaatc
ttcaaacacttcctgaccaaccgcattctgaaggaccccaaacagcgacgcttcttcaag
tccaacgacatctacgagctgtttaccttatctaaccctgacgggacgcagggcactgag
accagcgctatatttgcaggcaccggttctgatgtccaagctcctaagaagccagtcaga
ccaaggtctaaccatagacactctgtaaccaatcacaatgttagctccactggaggtgga
gccatcccttccccatcgccccggcctggagacaagaccaccccccttcgcagtaacatc
tctctcaataagaacaataggctgacggacagccaggaagccaaccagggcgaggcagat
attcctattggacagtcccagacagaatgtgacacacagcattctagggaggagggaagc
aatgctcatatactcacagacccagacagagaccaaaactccattctgacccacaaacac
agagactcacccgtgaccagcccaaacccacacaaacattcacacactaactccgtcagt
cccagcacacagaaacaacgagaaaaacatagtccacacaaacacagagagtctcaagga
cccggccccagtccctacaaacaccgggagaagaggaagcactgtgactcgacagtagaa
ggacctaaaaacaaacacgggaatcagaaacaggccaaggttgagggtcatcgcatctct
tacctggtgaagaagaggagctacaaaggacaagaggagcgcgaggagcagccggagaaa
caggaccagagacagagcgacgactatgtactagccaaactcttcaagaagtcgggtatc
cacagtgtgatgcagcatgactccatcatggaggcgtctaacccagactttgtcctggtg
gaagctgaagctaacagagtagctaaagacgcattgaaagctctgaaggtctccagacaa
cactgtagactgccctacaaccaacctgccccagctccagccaggaagaggtttggtcag
aagaagaatcctttgctgtctgctcctcctgctacagttgtcccagctcaggacaaatgc
aaggacgctgccattatcaagaaaactatcgctaggaaacccatcccggggggtcacttc
agtggagaaggggtagaggtgggaggctcttcctctactacggcccccctctcttcctcc
actctactggcctgcatgaaagctaggaaccacctcagcctgccccagagagaaggggat
gaaggagaagaggaagaggggggtgcccgtatcccatcaggccctcctgccccccctacg
gaacacgatgaactcctggtggatctgagaaactttgtggcattccagggagctgtggat
ggacaggctagcaccaaggaggtcctggaccacttcacccccagactgacccacacccag
acccctgtcttcagagaactactccgaaacatctgtaacttccacagggcaaaggggcag
gaggggacgtggagacttaaatctgactacagataa
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integrated database retrieval system
