Oncorhynchus tshawytscha (Chinook salmon): 112253635
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Entry
112253635 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112253635
00535 Proteoglycans [BR:
otw00535
]
112253635
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112253635
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112253635
Proteoglycans [BR:
otw00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
112253635
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112253635
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Fz
DUF1554
Motif
Other DBs
NCBI-GeneID:
112253635
NCBI-ProteinID:
XP_042169308
LinkDB
All DBs
Position
Unknown
AA seq
1874 aa
AA seq
DB search
MGSGSGSGSASGLGSGFGSGVESGVGSGTGSGSGSGLGERESLVLPTNLTGVVEDDLTGF
EGVKQGEPKTNLSDISSHDHNGTCHLVPSDWPICISRGSKHFSLPNFLNHTSVEEVGVAL
REWAWLAKAGCHHGAEWFLCLLLVPRCPLPGQVLNKVPLLPCCSFCQVLQDSCWPALDDG
RLPVECNLLPDRDQEAGLRCPPCVSPGRSGGKPAYYFGGLDGLTAAGQPALAHLPNPFYR
DFSLVFQILPSSPGVLFSITDASQKFMYVGVKLSAPDADGRNQKILFYYTEPDSEASYLA
ASFTVPSLDLVSWTKFSLSVFNDQVTFFMGCDASGKTVKLERSPDDMELDXGAGIFVGQA
GGADPDRFEGAIAELNVVGNPQAAELLCEDDDDSDAASGDFGSGDGDRRETSKTTTPPSL
RPVPEPPLTSSVSDRLSETGDRNHQTSVESRPGSGGQPGPSGSNGVKGERGEGQSWGQRS
RRAKGGIGVFLQLCFFLWRRRTWRKGRQRLEGGSSGFGYPGSKGDRGVPGPPGPPGPGGP
AAQVVRLGDGSVVQPVAGPMGPMGPPGAKGPAGPQGPEGEAGDPGEDGKLGPAGDRGFPG
TQGDSGVKGQKGDRGDGHPGPRGPPGPPGPPGPGIADRATFVDVEGSGGFPDLEKIQTLR
GLPGPPGPPGPPGPSAGGVSSHGSGSFGPPGPPGQDGARGLPGPTGPPGRPGTPGSSSGE
KGEAGDLGLPGPSGEKVSSQIHPYYPTSKSIDSLMLVVGNMMLVVGLLLEIDSLNMMLVV
GLLLEIDSLNMMLVVGLLLEIDSLNMMLVVGLLLEIDSLNMMSGVVGLLLEIDSLNMMLV
VGLLLEIDSLNMMLVVGLLLEIDSLNMMLVVGLLLEIDSLNMMLVVGLLLEIDSLNMMLV
VGLLLEIDSLLLNMMLVVGLLLEIDSLNMMLVVGLLLEIDSLNMMLVVGPLEIDSLNMML
VVGLLLEIDSLNMMLVVGLLLEIDSLNMMLVGHLYNLSLSFSHLFAPNHQGSQGDPGVPG
QAGQGGLAGLPGPMGPIGPPGPPGPSYPVRYGDGEGFRSDGGQWCCWSDRDSRTTGDLYI
AIDSSFGLPLRSRQLIHSHISIVFQGPPGIAGLPGRSGLPGLSGEKGSEGARGRDGTPGM
DGFPGQLGDKGERGDRGERGEPGREGGPPGPPGAPGPPGQIYQTSGSFDGVLGNQGQGGP
GLPGQAGFPGPMGPKGDTGEPGQTGYAAKGEKGDPGIIMGPDGRPLYLGGLGSQPGEKGH
PGPEGPPGPYGPAGLKGDIGMPGRPGRPGLNGVKGERGDSAGGTGGYGGPPGPPGPPGPP
GPAVPLDRFNRDDVSRLYPDSKGDKGDRGVPGIPGVPGLTSNFDIYTFKREMKGERGDSG
MKGEKGEPAGGYYGGGYGGQGGQPGPPGLPGPKGESIIGPSGPQGPPGNPGRGYEGRQGN
PGPPGPPGPSGSSSSPGAYRPTQTISIPGPPGPPGPPGTDGHSSGVMVLRSYDTMTATAR
RQAEGTLVYLVDQTDFYIRVRDGFRQIQLGPYIALPPDQGNEVAAVDPPPVVYYQPDHPS
NTATEQPPRQLDPHQPQPEGQHPVHPDPRYPTNPDPRYPAQPDPRYPAQPDPRYPAQPDP
RYPAQTRSTLPSSDQIHATAQPDPRYPAQPDPRYPAQPDPRYPAQPDPRYPSHSDPRYPS
HSDPRYPSHTDPRYPSYTDHQHNPDPVQPVQPQPAPVPQNPVYSDTRYPVTPQRRPRPPE
TPSHQHTSGPSIHLVALNAPQGGNMRGIRGADFLCFNQARAIGLKGTFRAFLSSKLQDLY
SIVRKSDRDRMPIVNLKDEVLFDSWEAIFSDSEGRVKDNVPIYSFDGKDIFTDGHMARQD
DMARFDQQGARPGG
NT seq
5625 nt
NT seq
+upstream
nt +downstream
nt
atgggttcaggatcagggtctggttcagcatctggtttagggtctgggtttggatcgggg
gttgagtctggtgtaggttcagggaccggctcgggttcggggtcagggcttggagaaagg
gaaagcttggttctccccactaacctaacaggggtggtggaggatgacctcacagggttt
gagggggtgaaacagggcgaaccaaagaccaacctctctgacatctcttctcatgaccac
aatggaacctgccaccttgtgccctctgattggccaatctgcatatcaagggggtcaaag
catttctcgctgcccaacttcctgaaccacacctctgtggaggaggttggtgtggccctg
agagagtgggcgtggctggccaaggcggggtgccaccatggagccgaatggttcctctgc
ctcctcctcgtgcccaggtgcccgctgcctggccaggtgctcaacaaggttcccctgctg
ccctgctgcagcttctgccaagtcctgcaagacagctgctggccagccctggatgacggg
cgacttcctgtagagtgtaatttgctgcccgacagggatcaggaggcggggttgcggtgt
ccgccatgcgtgtcaccaggccggtccggggggaaacccgcctactacttcggagggctg
gacgggctgactgctgcaggacagccggccctggcccacctccccaaccccttctacaga
gacttctccctggtcttccaaatcctcccctccagccccggggtcctcttctccatcaca
gacgcctcccagaagttcatgtacgtgggggtgaagctgagcgccccggacgctgacggc
aggaatcagaagattctgttctactacacagagcccgactctgaggcctcgtacctggcc
gctagtttcaccgtgccctccctggacctagtctcctggaccaagttctctctgtccgtg
ttcaacgaccaggtgaccttcttcatggggtgcgacgcctctgggaagacggtgaagttg
gagcgctcgccagatgacatggagctggacnagggggcgggcatcttcgtgggtcaggcg
ggaggcgcggaccctgacaggttcgagggcgcgatcgctgagctgaacgtggtgggtaac
cctcaagcagctgagttactctgtgaagacgatgatgactcagacgctgcctcaggtgac
tttggcagtggggatggggacagaagagagaccagcaaaactaccacacctccatctctc
cgaccagtgccagagccccctctgacatcatcagtgagcgacaggctctcagagacaggt
gacaggaatcatcagacctcagtagagtccagaccaggatcaggaggtcaaccaggccct
agtggttctaacggagtgaagggggagaggggagaagggcagtcctggggacagaggtcc
cgccgggccaaagggggaatcggggtctttctccagctctgcttcttcctctggcggagg
agaacgtggagaaaagggagacaaaggcttgaaggtggcagttctgggtttggttaccca
ggctccaagggggaccgtggcgtacctggtccccctggccctcctggccctggggggcca
gctgcccaggttgtgaggctaggggacggctctgtggtgcagccagtggctgggccaatg
ggaccgatggggcccccaggggccaaaggaccagcaggaccccagggaccagagggggag
gcgggggatccaggagaggatggcaaattaggacctgccggagacagagggttcccagga
acacaaggagactcaggggtcaaaggacaaaagggggatcgtggtgatggtcacccagga
cccaggggtcctccagggccacctggacccccaggcccagggatagctgaccgcgctaca
tttgtggatgtggaaggctccggaggattcccagatttggagaaaatacagactctccgt
ggtctaccaggccccccgggccctccaggtccccctggcccctcagccggtggtgtcagc
tcccatgggtcaggctctttcgggccccctggacctcccggacaggacggggcacgtggc
ctaccagggcccactggtccacctggcagacctggaaccccaggatccagtagcggagag
aagggagaagctggtgatctaggtcttccagggcccagtggagagaaggtgagctctcaa
atacacccatactatcccacctctaaatctatcgatagtctgatgttggtggtgggaaac
atgatgttggtggtgggacttctcctagagatcgatagtctaaacatgatgttggtggtg
ggacttctcctagagatcgatagtctaaacatgatgttggtggtgggacttctcctagag
attgatagtctaaacatgatgttggtggtgggacttctcctagagatcgatagtctaaac
atgatgtctggtgttgtgggacttctcctagagatcgatagtctaaacatgatgttggtg
gtgggacttctcctagagatcgatagtctaaacatgatgttggtggtgggacttctccta
gagatcgatagtctaaacatgatgttggtggtgggacttctcctagagatcgatagtcta
aacatgatgttggtggtgggacttctcctagagatcgatagtctaaacatgatgttggtg
gtgggacttctcctagagatcgatagtcttctcctaaacatgatgttggtggtgggactt
ctcctagagatcgatagtctaaacatgatgttggtggtgggacttctcctagagatcgat
agtctaaacatgatgttggtggtgggacctctagagatcgatagtctaaacatgatgttg
gtggtgggacttctcctagagatcgatagtctaaacatgatgttggtggtgggacttctc
ctagagatcgatagtctaaacatgatgttggtggggcacctttacaatctctctctctcg
ttctctcacctcttcgctcctaaccaccagggttctcagggtgaccctggagtgcctggt
caggcagggcaggggggcttagctggacttcctgggcccatgggaccgattgggcctcca
ggaccacccggaccttcctaccccgtgcgttatggtgacggggagggtttccggagtgac
gggggtcaatggtgttgctggagtgatagggattccaggaccacaggtgatctatacatt
gccattgactcatcatttggattgcctttacgatcacgtcaactaatacatagtcacata
tccattgtttttcagggtccgcctggaatcgctggccttccgggaagatctggtttgcct
gggctttcgggagagaaggggagcgagggagcaagaggacgggatggaacaccagggatg
gacggattcccaggacaattgggagacaaaggggagaggggagacagaggagaaagaggt
gagccaggacgtgaaggggggccccctggacctccaggagcccctggcccaccgggacag
atctaccagacctcaggcagctttgatggagttcttgggaatcaaggacagggaggacca
ggtcttcccggccaggcaggattcccagggcctatgggaccaaagggagatacaggagag
cctggacagacaggatacgcagctaagggggagaaaggagaccctggtattatcatgggg
cctgatggaagacccctgtacctgggagggctggggtctcaaccgggagagaagggacac
ccgggacctgagggacctcctggtccctatggtccagctggtctaaagggagatataggc
atgccaggtagaccgggccgtcctgggttgaatggtgtcaaaggagagaggggggattca
gcgggagggactggaggatatggaggtcctccaggaccacctggcccacccggacccccc
gggccagcagtacctctggacaggttcaatagggatgatgtctcacggttatatcctgac
tccaaaggagacaaaggtgatcgtggagtaccaggaatacccggggtaccaggtctcacg
tccaactttgacatctacaccttcaagagggagatgaagggagagagaggagactcgggg
atgaagggggagaagggcgagccagccggaggatattatggtggcggttacggtggacag
ggtggtcaacctggacctccaggacttccagggccaaagggagagtccatcatcggtcct
tcagggccccagggccctccaggtaacccaggaagagggtacgaaggcaggcaagggaac
ccaggcccaccggggccccccggaccttcaggatcctcctcctcacctggagcctacagg
ccaacacagaccatcagcatccctggacctccgggccctcctggcccacctggaactgat
ggacactcctctggggtgatggtgctgaggtcatatgacacgatgacagccacggccaga
cgacaggcagaggggacactggtgtatctggtcgaccaaacagacttttacatcagagta
cgagatggcttccggcaaatccagcttggaccatacatagctttaccccctgaccagggt
aatgaggtagcagctgtcgaccctcctccagtggtctactaccagccagaccatccctct
aacacggccacagagcaaccccccagacagctagacccccaccagccacagcctgaggga
caacaccctgttcaccccgacccacgttacccgactaacccggatccacgctatccagcc
cagccagatccacgctacccagcccagcctgatccacgctacccagctcagccagatcca
cgctacccagcccagaccagatccacgctacccagctcagaccagatccacgctaccgcc
cagcctgatccacgctacccagcccagccagatccacgctacccagcccagccagatcca
cgctacccagcccagccagatccacgctacccctcacattcagaccctagatacccctca
cattcagaccccagatacccctcacacactgatccacggtaccccagttatacagaccac
cagcacaaccctgaccctgttcagccggtccagccccagccagcccctgtcccacagaac
ccggtttactcagacacccgctaccctgtaaccccacaacgcagacccagacctcctgag
acccccagccaccaacacacgtcaggcccaagtattcacctggtcgccctgaacgccccc
caggggggtaacatgcggggtatcagaggggcagacttcctgtgtttcaaccaggctcgg
gccatcgggctgaagggaaccttccgggctttcctctcctccaagctccaggacctttac
agcatcgtccgcaagtcagacagagaccgcatgcccatcgtcaacctaaaggatgaggtc
ctgtttgacagttgggaggccatcttcagtgactcagagggcagagtgaaggacaatgta
cccatctactccttcgatggcaaagacattttcacagacgggcacatggccagacaagat
gatatggcacggttcgaccagcagggggcacggccaggtggataa
DBGET
integrated database retrieval system
