Oncorhynchus tshawytscha (Chinook salmon): 112253648
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Entry
112253648 CDS
T05605
Name
(RefSeq) nuclear factor NF-kappa-B p100 subunit isoform X1
KO
K04469
nuclear factor of kappa light polypeptide gene enhancer in B-cells 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04010
MAPK signaling pathway
otw04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
112253648
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
112253648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112253648
Transcription factors [BR:
otw03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
112253648
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Death
Fimbrial_CS1
Motif
Other DBs
NCBI-GeneID:
112253648
NCBI-ProteinID:
XP_024281348
LinkDB
All DBs
Position
LG01:complement(56058952..56084711)
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AA seq
916 aa
AA seq
DB search
MSGALRMDEAQYSMKMIENELMMNLSYEFMPPADVKIEPYVPETAHGPYIQIIEEPKQRG
FRFRYECEGPSHGGLPGASSERNRRTYPTVKVSNYVGIARVEVQLVTHSDPPQVHAHSLV
GRQCCTESGICSMDVGPNDLTAQFSNLGILHVTKRGVGEVLCKRLRDEKRRQGGQHYHFT
DAEEQAIGREAKELGKIMDLNIVRLKFTAYLQDSNGGFSRALKPVVSNPIYDSKSPNASN
LKISRMDKTSGSVLGGDEIFLLCDKVQKDDIEIRFYEEDDGSWEAFGDFSPTDVHKQYAI
VFKTPPYHSAEIERQVTVFLQLKRKKGGDCSDPKQFTYVPRVQDKEEVQRKKQKPISYND
QWRGPLGGAGGAGRGAGGFGGGAGGGAGGGFQFNQQMNGTGWMGGGFSGFGGGGAQMSGT
TAQAEGTQQQQAGGMAGQTPGQTSSPLQQQLFQIAATLQSRATRMSKQTAGALLQYCTTG
DVRVLLAMQRHLCGVQDKNGDTPLHLAIIHQQSAVTQQLVHTLLTIQQHKVLNKLNHLGQ
TPLHLAVITRQVKVVDVLLRAGADPTLLDRDGRNALHLAALAGDDVTLRVLLGHLGERYL
HLVNMADYHGLHPLHLAVCKGGERCLRLLVEGGAKINAPEQKSGCSALHLAVRENYFKVA
CTLITELKADVNMCTFGGNTPLHLAASRSSPPLCSMLIAAGADKNLENDEPLFFSSSSSD
EEQEDGPVSDFRESAIQQLPKTTPLSEGEQVNPRKRSATGHTPFDLAKCHKVRNLLDTRQ
SPKPGQQSSKKPKPSSMEAERGQLDSETLSKLCELLSLNDVPWRQLAEKLNMLSLAHLYQ
ESPLPCHNLLENYQLGGGPVEGLVEALQSLGLTEGVRLLRQAELREDKQNTDQTVDSGFA
SQPMEEEMEEPALANQ
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgtctggagcactgagaatggatgaagctcagtacagcatgaaaatgattgaaaatgag
ctgatgatgaatttgtcctatgagttcatgccccctgcggatgtcaagatcgagccctat
gtaccggagaccgctcatggaccctacattcagatcattgaggagcccaaacagagaggc
ttcagattccgctatgagtgtgagggtccgtcccacggtgggctcccaggggcctcaagc
gagaggaacaggaggacctatccaactgtcaaggtgtctaactatgtggggattgccagg
gtggaggtgcagctagtgacccactcagaccccccccaggtccacgctcacagtctggtg
gggaggcagtgctgcacggagagtggcatatgcagtatggatgtgggcccaaatgacctc
acagcacagttcagtaacctgggcatccttcatgtcactaagagaggggtgggggaagtg
ttgtgcaagagactgagagatgagaagaggaggcaaggggggcagcactatcattttact
gatgcagaggaacaagccatagggagagaagccaaggagcttgggaagatcatggacctg
aacatagtgaggttaaagttcacggcctacctccaggacagtaacggcgggttctctagg
gccctgaagccggtggtctccaacccaatctatgacagcaagtcacccaatgcctcgaac
ctgaagatctcccgtatggataagaccagtgggtctgtgctgggaggagatgagatcttc
ctattgtgtgacaaagtacagaaagatgacattgagatccgcttttatgaagaggatgat
ggaagctgggaggcctttggtgatttctctccaactgatgtccacaagcagtacgccatt
gtgtttaagacgccgccgtaccacagcgccgagatcgagcgtcaagtcactgtattcctc
cagttgaaaaggaagaaaggcggcgactgcagcgaccccaagcagtttacctacgttccc
cgagttcaagataaagaggaggtgcagcgtaaaaagcagaagcccatctcctataatgac
caatggagaggacctctgggaggggctgggggtgcagggagaggggccggaggattcgga
ggcggagcaggtggcggagcaggtggcggcttccagtttaaccagcagatgaatggaact
gggtggatggggggtggattctctggttttgggggcggtggagcccagatgtcaggcacc
actgcccaggctgaggggacccagcagcaacaggcaggagggatggccggacagacgcca
ggacagacatcctcaccactacaacagcagctcttccagattgctgccactctccagagc
agggccactcggatgagcaagcagacagctggagctctactacagtactgcaccactggg
gatgtccgggtccttctggcaatgcagagacacctatgtggggtccaggataaaaacgga
gacacgcctttgcacctggccatcattcaccagcagtcagctgtgacccagcagctggtt
catacactcctcaccatccagcaacacaaagtcctcaacaagctcaaccacctcggccag
actcctctccatctggcggtgatcaccaggcaggttaaggtggtggatgttctcctccgg
gccggagcagaccccaccctgctggaccgggacggccggaatgccctgcacctggcagcg
ctggccggggacgacgtcacactccgggtcctgctgggccacctaggagaacgctacctc
cacctggtcaacatggccgactatcatggtctccatcctctccacctggctgtttgtaag
ggaggagagcgctgtctgcgtctgctggtggagggcggggctaagatcaacgccccggag
cagaagagtggatgctccgccctccatctggctgttagagagaactacttcaaagtggcc
tgcactctcatcacagagctgaaagcagatgtaaacatgtgtacgtttggagggaacact
cctctccatctggccgccagtcgcagctccccccccctctgctccatgctcattgctgca
ggagccgacaagaatctggagaacgacgagccgctcttcttcagctcctcctcgtcagat
gaggagcaggaggatggaccagtgagcgatttcagagagtcggcgatccaacagctaccg
aaaacaacaccactttcagagggagaacaagtcaaccctcgtaagaggtcagcgacagga
catacaccctttgacctggctaaatgtcacaaggtgagaaaccttctagacaccagacag
agtcccaagcccggtcaacaatcaagtaaaaagcctaaaccgagcagcatggaagcagaa
agagggcagctagacagtgagacgctaagtaagctgtgtgagctcctcagtctgaacgat
gtgccgtggagacagctggcagagaaactcaacatgctctcactggcacacctatatcag
gagagtcccttgccctgtcacaacttgctggagaattaccagttgggtggcggtccagtg
gaaggcctggtggaagctctacagtctctgggtctgactgaaggagtgagactgctgaga
caggctgagctgagagaggacaaacaaaacacagatcagacagtggacagtggctttgct
agtcagccaatggaggaggagatggaggagccagccttggctaaccagtga
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