Oncorhynchus tshawytscha (Chinook salmon): 112253818
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Entry
112253818 CDS
T05605
Name
(RefSeq) alsin-like isoform X1
KO
K04575
amyotrophic lateral sclerosis 2 protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112253818
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
112253818
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RCC1
RCC1_2
MORN
VPS9
PH
RhoGEF
Motif
Other DBs
NCBI-GeneID:
112253818
NCBI-ProteinID:
XP_024281600
LinkDB
All DBs
Position
LG07:8837976..8858769
Genome browser
AA seq
1724 aa
AA seq
DB search
MHQHCHGQISVMESQRKSSGEDSSGERGLLHTWKGYSCSVTPERVLLSRPVLQAALGTRH
GVLLVEGGQVYSFGEFPWKQSQVSEVGPLKPVLESSLSGQRVVAVAAGSFHSGAVTEDGG
VHMWGENSFGQCGLSSLTVVSNPTPVAVLDPDTSPPHTIRVLELACGEQHSLALSAQHEV
WAWGSGCQLGLVTTIFPVWKPQKVEHLAGRHVLQVACGAFHSLALVRCLPPQEARRPLPD
KCGQCNQLLYTMTDKEDHVIISDSHYCPLGVELLDDGEARMEPGRSPPLRLQSSPSEPLS
SHTSASAPNLHPSITDHTDYERRRTVAQNGEVLTTTDSDISAAGTDSDRTVGGMGGAGSQ
NSPYPDDQAVKEYLKKLSDTSLAEETAKMTKAGASFQPPADSLDLLTSDLLPGVMPVTTS
SALNSLVSSCASAVAERVVSTCEALSLKKRINCYYPGVGGVAGAPGGVPGGFPGGPAEER
VRLEESMQGKKSCSTGDIREEEAEGLSRRLSLPGLLSQVSPRLLRRASRPRVRAVPLTPV
GGLPEAGELLPSLQTEVWSWGRGEEGQLGHGDNLPRLQPLCIKCLSSKEVVLVAAGAHHS
LALTAQSQVFSWGSNSSGQLGHMACPTTIPRLAKLSEGIRVWDVGAGAQHTLLLADGDCY
QPILYYSGQQVREAAQDAPQDQTEGYSYTQQPVLLPFCMNLGYVSGVFAGGQSCVALADR
NVTGFIASLHELAAAERKFYCKLSSVKNHILRPLLDLGENYCSRYSSAGQRPWVRESLGT
ALGPASTVLLQSLARCYSRLCHLTGQHSTSLTANLRRRREVKSLVMLEHASIFLDTYNEY
CCSVGNFLVMGGFQALAKPSLDFFGKCPELLQRLAESSEENIPLSDLLVALFYLPMRHLH
EYGRLLLKLGTCFEVSSVDYQKLQDGCSKFEALALHLKRRRKEAEYTYHFWKSFPGKMTV
SGLDSLRKPPRRLICESSNKALTLQNSGRFSVNWFILFNDALVHAQGVVPYKSLFSTHHV
FPLATLWVEPIPEENTDLYGLKVISPEETFTLLACSSMEKAKWLRSINQAVDKAMSGAGQ
SGSGAGQRAEPPISRTASYTFYKDSRLKEATYEGRWLAGKPNGRGMVKWLDGRIYTGMFK
NGLEDGFGDYVMPSKTLNLNDHYQGHWKEGKMHGIGTYKYATGELYEGSFQDNMRHGHGM
LRSGTLNSSSPSVFIGQWVHDKKTGYGVFDDITRGEKYMGMWQDDQRQGTGVIVTQFGLY
YEGAFNNNKMQGTGVLLSEDNTTYEGEFSEDWTLNGKGVLTMANGDYFEGTFTGEWGSGL
KVTGSFFKPNLYDSDGDKGRAVKLGRLAVRPEEKWRAVFEECWMRLGCEAPGQGENQRAW
ENIAVALTTSRRELRDCPEMNLSPSHNLTLESLEFNPQQHVGPVTMEKYDRIRHYLIKAC
DTPLHPLGRLMETLVAVYRMTYVGVGANRRLLLQAVNEIMSYLARIFQLVRFLFPDLPEE
GGVIPEPSSDPQDKKDSKCADTQLESPKPGRVVSSSSLLLPVLLPRLYPPLFTLYALEKE
REDDVYWECVLRLNKQPDMALLAFLGVQHKFWPVSVPVLGERTEVVSSTKDACFASATET
LQQIRQFVFSTTFTPSDKLQVIQLTFEEITKEVVSSLEDSFLWSMDDLFPVFLYVVLRAR
IRNLGSEVSLIEDLMDPCVQHGEHGIMFTTLKACYYQIQHEKTT
NT seq
5175 nt
NT seq
+upstream
nt +downstream
nt
atgcatcagcattgccatggacaaatctcagtgatggagtcccagaggaaaagctctggt
gaggacagttcaggggagcgaggtttgctccacacctggaagggctactcctgtagtgtc
accccagagagagtgctcctgtccaggcctgtgctgcaggctgccctgggaacacgccat
ggggttctactggtggagggcgggcaggtgtacagctttggtgagttcccatggaaacag
agccaggtctcagaggtgggccccctgaagcccgtcttagagagctctctcagcggccag
cgcgttgtcgccgtggcagcgggcagcttccacagcggggcggttaccgaggacggcggg
gtccacatgtggggggagaactccttcggccagtgtggcctgtccagcctcactgtagtc
tccaaccctactccagtggctgtcctggaccccgacaccagcccccctcataccatccgg
gtcctggagctggcctgcggggagcagcactcccttgctctctctgcccagcacgaggtg
tgggcctggggcagcggctgccagctgggcctggtcaccaccatcttccctgtatggaag
ccccagaaggtggagcacctggcgggcagacacgtccttcaggtggcctgtggggccttc
cacagccttgccttggtgcgttgcctaccacctcaggaggcccggcggcccctgccagac
aagtgtggccagtgcaaccagctgctctacaccatgacggacaaggaggaccacgtcatt
atctcagatagtcattactgccccctaggggtggagttgctggatgacggagaggccagg
atggagcctggaaggtcccctccgctcaggctccagagctccccttcagagcccctctcc
tctcatacctcggcctcagcgcctaatctccatccctccataacagaccatacagactat
gagaggaggaggacagtggcacagaatggggaagtcttaaccactacagactctgacatc
tctgctgctgggacagactcagatcgaactgttggaggtatggggggtgcagggtctcag
aactccccctaccctgatgatcaggcagtgaaagaatatctcaagaaactgtctgacacc
tcattggctgaggagactgccaagatgaccaaagcaggagcaagttttcagcccccagca
gatagccttgacctcctgacctctgacctcctccctggggtcatgccagtgaccaccagc
tctgccctcaacagcctggtctcatcctgtgcctccgccgtggctgagagagtggtctcc
acctgcgaggctctgtccctgaagaagaggattaactgctactatcctggggttgggggt
gtagcaggagcacccggtggggtgccaggagggtttccagggggccccgcggaggagcgg
gtgcgtctggaggagtccatgcaggggaagaagagctgcagcacgggggatatccgtgag
gaggaggccgagggcctgagtcgacgtctctctctgcctggactcctctctcaggtgtcc
cccaggttgctgcggagggccagccggcccagggtgcgagcggtgcccctcacccctgtg
ggagggctcccagaggcgggggagctgctcccctccctgcagaccgaggtgtggagctgg
gggcgtggtgaggagggccagctaggccacggggacaacctccccaggctgcagccactg
tgcatcaagtgcctgagcagtaaggaggtggtgcttgtggctgctggggcacatcactcc
ctggccctgacggcacagtcccaggtcttctcctggggtagtaacagctctggccagcta
ggacacatggcgtgtcctactactatccctcgccttgccaagctgtctgaggggatccgt
gtatgggatgtgggtgcgggggcgcagcacaccctcctcctggccgatggggactgttac
cagcccatcctttactatagcggacagcaggtcagagaggcggctcaggacgcaccccag
gaccagacagaggggtacagctacacccagcaaccagtgctgctccccttctgcatgaac
ttgggctacgtgagcggtgtgtttgcggggggccagagctgcgtggcgctagccgaccgc
aacgtcacgggtttcatcgccagcctccacgagctggctgctgctgagaggaagttctac
tgcaagctgagctctgtgaagaaccacatcctgcgccccctgttggacctgggtgagaac
tactgctcccgctacagctccgctggacagaggccatgggtcagagagtcgttgggtaca
gccctaggcccggcgtccacagtgctgctacagagcctggcgaggtgttatagccgcctg
tgccacctcactgggcagcactccacctcgctcaccgccaacctgcgccgccgtcgggag
gtgaaaagcttggttatgctggagcacgccagcatcttcctggacacgtacaatgagtac
tgctgctctgtgggtaacttcctggtgatggggggcttccaagctctggccaagccctcg
ctagatttctttgggaagtgtccagagctgttgcagcggctggcagagtccagcgaggag
aacattcctctgagtgacctgttggtggcgctcttctacctgcccatgagacaccttcac
gagtatggcaggctgctgctcaaactgggaacctgcttcgaggtgagctcagtggactac
cagaagctgcaggacggctgctctaagtttgaggccctggctcttcatctgaagaggagg
aggaaggaggcagagtacacgtaccacttctggaagagcttccctggcaagatgacggtc
agtggcctggattccctgcgtaagcccccccggaggctgatctgtgagagcagtaacaag
gccctgacgctacagaactctggaaggttctctgtcaactggttcatcctcttcaatgat
gcactcgtccacgctcagggcgtggttccctataaaagccttttctccacccaccatgtc
ttcccattggccacactgtgggtcgagcccatccctgaggagaacactgacctgtatgga
ctgaaggtgatctcacctgaggagaccttcaccctgctggcctgttcttccatggagaag
gccaagtggcttcgctccatcaaccaggcggtggacaaggccatgagtggggcgggccag
tcaggctcaggggcagggcagagggcggagcctcccatctcccggaccgcctcctacacc
ttctacaaggacagccgtctgaaggaggccacctacgagggccgctggctggccggcaag
cccaatgggaggggaatggtgaagtggcttgatgggagaatttacacggggatgttcaag
aacggactggaggatggttttggagattacgttatgcccagcaagacattgaacctgaac
gaccactatcaaggccactggaaagaagggaagatgcacggcatcggaacatacaagtat
gctacaggtgagttgtacgagggctcgttccaggacaacatgcgtcacggtcacgggatg
ctgcgcagcggcacgctgaactcctcctcccccagcgtcttcatcggccaatgggtgcac
gacaagaagacgggctacggcgtctttgatgacatcaccagaggagagaagtacatgggc
atgtggcaggatgaccagcggcagggcacgggcgtcatagtaacccagtttggcctgtac
tacgagggagccttcaacaacaacaagatgcagggcacaggggtcttgctgtctgaggac
aacaccacatatgaaggagagttctcggaggactggactctcaacggaaagggtgtgctg
accatggctaatggggactactttgagggcaccttcaccggggagtggggctccggcctg
aaggttaccggatccttcttcaaacccaacctctacgactcagacggggacaagggccgc
gctgttaagctggggcgcctggcggtgcgtccggaggagaagtggagggcagtgtttgag
gagtgttggatgaggctgggctgtgaggcccctggccagggagagaaccagagagcctgg
gagaacatcgctgtagccctgaccaccagcaggagagagctcagagactgcccggagatg
aacctgagtccgagtcataacctaactctggagagtctggagttcaatcctcagcagcat
gttggccctgttaccatggagaagtatgaccgtatccgccattacctcatcaaggcatgt
gacacgcccctgcaccccctgggcaggttgatggagaccctagtggctgtctacaggatg
acctacgtgggggtgggggccaaccgccgcctcctactgcaggctgtcaacgagatcatg
tcctacctggcacgcatcttccagctcgtcaggttcctgttcccagatctgcctgaggag
ggtggagtgatccctgaaccatcctctgacccccaggacaagaaggattccaaatgcgca
gacacccagctagaatcccccaaacctgggcgtgtagtgagtagctcctctctgctcctg
ccggtgttactgcctcgtctctacccccctctcttcaccctgtacgccctggagaaggag
agggaggacgacgtgtactgggagtgtgtcctccgcctcaacaaacagccagacatggcc
ctgctcgccttcctcggagtgcaacataagttttggccggtttcggttccagtgctgggg
gagaggacagaggttgtgtccagcacaaaagacgcctgttttgcctcggcaacggagacc
ttacagcaaatcagacagtttgttttcagcacaacgttcaccccatccgacaagctgcag
gtgatccagctgacattcgaggagatcacaaaggaagtggtgtcatcactggaggatagc
ttcctgtggtccatggacgacctgtttcctgtgttcctctacgtggtgctgcgcgcccgg
atcaggaatctggggtcagaggtgagtctgatagaggacttgatggacccctgtgtacag
catggagaacacggcatcatgttcaccactctcaaggcgtgttactatcagatccagcat
gagaagaccacatga
DBGET
integrated database retrieval system
