Oncorhynchus tshawytscha (Chinook salmon): 112253989
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Entry
112253989 CDS
T05605
Symbol
itsn1
Name
(RefSeq) intersectin-1 isoform X1
KO
K20045
intersectin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112253989 (itsn1)
Membrane trafficking [BR:
otw04131
]
Endocytosis
Clathrin-mediated endocytosis
Other core components
112253989 (itsn1)
Lipid raft mediated endocytosis
Caveolin-mediated endocytosis
112253989 (itsn1)
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
112253989 (itsn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_13
SH3_9
SH3_1
SH3_2
RhoGEF
INTAP
EF-hand_4
C2
EF-hand_1
EF-hand_6
EF-hand_7
PH
EF-hand_5
PH_16
Motif
Other DBs
NCBI-GeneID:
112253989
NCBI-ProteinID:
XP_042180044
LinkDB
All DBs
Position
LG07:12214500..12284779
Genome browser
AA seq
1787 aa
AA seq
DB search
MAQFPTPFGGGLDTWVISLDERAKHDQQFVSLAPSPAGYITGDQARNFFLQSGLPPPILA
QIWALADMNNDGKMDMHEFSIAMKLIKLKLQGHPLPPSLPPSMKQPPLTLPPPPTAPFGM
HGLGVMPGLPAVPPLPMPPMPGVGMSPPLVSSVPPSVPPLANGAPMTGFSHPATTLNKSS
SSNRSGAKMQGQSFETSSTPVPPQPPTDWAVPSSSRLKYRQLFNSHDKMMSGHLTGPQAR
TILMQSSLPQTSLASIWNLSDIDQDGKLTAEEFILAMHLIDMAMSGLPLPPILPPDFIPP
TFRRVRSGSGVSVTSLHSTDQRVQEEAEEEQESEKQKLEKLTFEDRKRENFERGNLELEK
RRQALLELQRKEQERLAALEREEQERKERERLEQERRRQQELEKQLERQREMERQREEER
RKEIERREAAKRELERQRQLEWERNRRQELLTQRNREQENIVLLKARKKTLELELEALND
KKSQLEGKLQDIRFRLSAQRHEIESTNKTREVRIAEITHLQQQLQDSQQWLGRLIPDKQC
LNEQLKQVQQNSLHRDSLSSLQKALEVKESSRQQLREQLDTVERETRSKLLEIDAFNTQL
KSLAVFYQGHTARIEGLRLELLLEEQRGRQELREIHSKQQRQKQKDHLEGEFNIHAIAQE
RAKSAELTDGRLSATDEGLAWRDEGTVEAPTPPPQPWMKRVSEEEGRTKKDMQDKLNQLF
MQQPEPGKLMNQSPWPTGDKIPVTGFNQDKVKVVFYRALYPFDARSHDEITITPGDIVMV
DESQTGEPGWLGGELKGKTGWFPANYAEKIPETEVPMSLRASAATTGAAPKLASRLTPNA
VSTTPTPPSQPMATPPPATAPPAPGPCPGPGPASSSSSASSNWADFSTTWPSTSSVEKTE
TGEGWDAWPTQPSLSVPSAGPGGQLRQRSAFTPATLTGSSPSPVLGQGEKVEGLQAQALY
PWRAKKDNHLNFNKSHVITVLEQQDMWWFGEVQGQRGWFPKSYVKLISGPVRKSMSIESG
SSDSPPIMKRPTPSPTKSMDPGEEYIAMYTYESNEQGDLTFQQGDVIVVTKKEGDWWTGV
VSGKTGVFPSNYVKPKDSEGLGPAGKTGSLGKKPEIAQVIAPYTATGAEQLTLAPGQLIL
IRKKNPGGWWEGELQARGKKRQIGWFPANYVKLLSPSTSKTTPTEPTPPKLPMPSAGRGQ
EQGSDGGPPGPWGPSLTQHMTAVCQVIGMYDYMAQNDDELPFGKGQIINVLSREDPDWWK
GELNGSVGLFPSNYVKLTTDTDPSQQWCADLHLLDMLTPVERKRQGYTHELIVTEENYVN
DLQLVTEVFQKPLLESELLTEKEVAMIFVNWKELIMCNIKLLKALRVRKKMSGERMPVKM
IGDILTAQLPHMQPYIRFCSCQLNGATLIQQKTDEVPEFKDFVKRLAMDPGCKGMPLSSF
LLKPMQRVTRYPLIIKNILENTPEAHPDHSHLKQALEKAEELCSQVNEGVREKENSDRLE
WIQAHVQCEGLSEQLVFNSVTNCLGPRKFLHSGKLYKAKSNKELYGFLFNDFLLLTQIIK
PLGFSGCDKVFSAKSHLQYRMYKTPIFLNEVLVKLPTDPSGDEPIFHISHIDRVYTIRAE
SINERTAWVQKIKAASELFIETEKKKREKAYLVRSQRATGIGRLMVNIVEGIELKPCRSH
GKSNPYCEVTMGSQCHITKTLQDTLNPKWNSNCQFFIKDLEQDVLCVTVFERDQFSPDDF
LGRTEIRLADIKKDQGSKGPITKRLLLHEVPTGEIVVRLDLQLFEEP
NT seq
5364 nt
NT seq
+upstream
nt +downstream
nt
atggctcagtttcccacgcccttcggaggaggtctggacacctgggtgatctctttggac
gagcgagccaaacatgaccagcagtttgtcagcctggccccctcaccagctggctacatc
acaggtgaccaggccaggaatttcttcctgcagtcaggcctgccccctcccatcctggca
cagatatgggccctggccgatatgaacaatgatgggaagatggacatgcatgagttctcc
atcgccatgaagctaatcaagctcaagctgcagggtcaccccctgcccccctctctgccc
ccctccatgaagcagccgcccctcaccctgcccccgccacccaccgcaccctttggaatg
catggtttaggggtaatgccaggcctcccagcagtccctccattacccatgccccctatg
ccaggggtgggtatgtccccccctctggtgtcgtcggttcccccgtctgtaccccccttg
gccaacggagcgccaatgacgggcttctcccacccagccaccacactcaacaaaagctct
tcttccaaccgctccggtgccaagatgcagggccagtcttttgagacttctagcacccct
gtgcccccccagcctcccactgactgggctgttcccagctcgtcccggctaaagtaccgg
cagctcttcaacagccacgacaagatgatgagcggccacctcaccggaccccaagcaaga
accatcctgatgcagtccagcttgccccagacctcgctggcgtccatatggaacctgtcg
gacatcgaccaggacggcaagctgacggccgaggagttcatcctggccatgcacctgatt
gacatggccatgtccggcctgcccctgccccctatcctgcccccagacttcatccccccc
acctttaggagggtacgtagtggtagcggggtgtctgtcaccagcctgcactccactgac
cagcgggtccaagaggaggccgaagaggagcaggagagcgagaaacagaagctggagaaa
ctgactttcgaggacaggaagcgggagaactttgagcggggcaacctggagctggagaag
cgtcgacaggccctgcttgagctgcagcgcaaggagcaggagcgtctggcggcgctggag
cgcgaggagcaggagaggaaggagcgcgagcggctcgagcaggagaggcggcggcagcag
gagctggagaagcagctggagaggcagagggagatggagaggcagcgggaggaggaaaga
cgcaaggagattgagaggagagaggcggcaaagcgggagctggagcgtcagcgtcagttg
gagtgggagcggaaccgccggcaggagctgctgacccagaggaaccgagagcaggagaac
attgtcctgctcaaagcccgcaagaagaccctggagttagagctggaggcactgaacgac
aagaagagccagctggagggcaagctgcaggacatccgcttccgcctgtctgcccagcgg
catgagatcgagagcaccaacaagacccgcgaggtccgcatcgctgagatcacccacctc
caacagcagctgcaggactctcagcagtggctcggcaggctgatccctgacaaacagtgt
ctaaacgaacaactcaaacaggttcaacagaacagcctgcacagagactccctgtcgtcg
ctgcagaaggcgttggaggtcaaggagtctagtcggcagcagctgagagaacagcttgac
actgtggagagagagacccgctccaagctgctggagatagatgcctttaacacccagctc
aagtctctggctgtgttctatcagggccacactgcccggatagagggcctccgtctggag
ctgctgctggaggagcagagggggcgacaggagctccgagagatccacagcaagcagcag
aggcaaaagcagaaggatcacctggagggagaattcaacatccacgccatcgcccaggag
agggccaagtccgccgagctcacagacggaaggttgtctgccactgacgagggcctggcg
tggcgagatgagggcacggtggaggcccccaccccacccccccagccctggatgaagcgc
gtgagtgaggaggaggggcgcactaagaaggacatgcaggacaaactcaaccagctcttc
atgcagcagcctgaaccagggaaactcatgaaccagagcccatggcccacgggcgacaag
attccggtgactgggttcaaccaggacaaggtcaaggtggtcttctaccgggcgctgtac
ccctttgatgcccgcagtcacgatgagatcaccatcacccccggagacattgtcatggtg
gacgagtcccagacaggtgagccaggctggctgggcggcgagctgaaggggaagacgggc
tggttccctgccaactacgcagagaagatcccagaaaccgaggttcccatgagcctgcgg
gccagtgctgccaccacgggcgctgcgcccaaactggcctcacggctcacacccaacgcc
gtctccaccacacccacgccacccagccagccaatggcaacccctcccccggcaacagct
ccccctgcccccggtccctgccctggccctggtcccgcctcttcctcctcctcggcatct
agtaactgggcagatttcagcaccacatggccgtccaccagctctgtagagaagactgag
actggggagggctgggacgcttggcccacccagccgtctctctctgtgcccagtgccggg
cccgggggccagctgcgccagcgctctgccttcacacccgccaccctcactggctcctct
ccgtctcccgtcctgggacagggggaaaaggtggagggcttgcaggcccaggcgctgtac
ccgtggcgggccaagaaggacaaccacctcaacttcaacaagagccacgtgatcacagtg
ctggagcagcaggacatgtggtggttcggcgaggtgcagggccagcggggctggttcccc
aagtcctacgtcaagctcatctctggccccgtacgcaagtccatgagcattgagtctggc
tcatccgacagccccccgatcatgaagagacccaccccgtcccctaccaagtccatggac
ccaggagaagaatacatagccatgtacacctacgagagcaatgagcagggcgacctgacc
ttccagcaaggcgacgtcatcgtggtcaccaagaaggagggcgactggtggacaggcgtg
gtctcaggcaagacgggggtattcccttccaactacgtcaaacccaaggactctgaggga
ctgggacccgcagggaagactggaagcctggggaagaagcccgagatagcccaggtcatc
gccccgtacacggccacgggggccgagcagctcaccctggcgcccggccagctcatcctc
atcaggaagaagaacccggggggctggtgggaaggggagctacaggcccggggaaagaag
cggcagattggctggttcccggccaactacgtgaagctcctgagccccagcaccagtaag
accacgcccacagaacccacaccccccaagctgccaatgcccagtgcaggtaggggccag
gagcagggatctgacgggggcccgccagggccttggggcccctccttgactcaacatatg
acggcagtctgtcaggtgattggcatgtacgactacatggcgcagaatgatgacgagctg
ccctttgggaagggccagatcatcaatgtgctgagcagggaagaccctgattggtggaaa
ggcgagctgaacggttccgtgggcctcttcccctccaactacgtcaaactgaccaccgac
acagaccccagccaacaatggtgcgcggacctgcacctgctggacatgctgacccccgtt
gagaggaagagacagggctacacgcacgagctcatcgtcaccgaggagaactatgtcaat
gacctgcagctcgtcaccgaggtctttcagaagcctctgctggagtcggagctgctgact
gagaaagaggtggccatgatcttcgtcaactggaaggagctcatcatgtgtaacatcaag
ctgctcaaggctctgagggttaggaagaagatgtcgggcgagcggatgccggtgaagatg
attggagacatcctgacggctcagctgccccacatgcagccctacatccgcttctgcagc
tgccagctcaacggggccacgctcatccagcagaagaccgacgaggtgcccgagttcaag
gactttgtcaagagactggccatggacccaggttgtaagggaatgcccctctccagcttc
ctcctcaaacccatgcaaagggtgacgcgctaccccctcatcatcaaaaatatcctagag
aatactccggaggctcacccggaccatagccatctgaagcaggctctggagaaggctgag
gagctgtgctcccaggtcaacgagggtgtcagggagaaggagaactctgaccggctggag
tggatccaggcccacgtccagtgtgaggggctgtctgagcaactcgtgttcaactcggtg
accaactgcctgggcccgcgcaagttcctgcacagcggcaaactctacaaggccaagagc
aacaaggagctgtacggcttcctattcaacgacttcctcctgctgactcagatcatcaag
cccctgggcttctcgggctgcgacaaggtgttcagtgccaagtcccacctgcagtaccgc
atgtacaagacccccatcttcctgaacgaggtgttggtgaagctgccaacagatccctcg
ggagatgagcccatcttccacatctcccacatcgacagggtctacaccatccgggcagag
agcatcaacgagaggactgcttgggtgcagaagatcaaggcagcttcggagctcttcatc
gagacagagaagaagaagagggagaaggcttacctggttcgctcacagagggccacgggc
atcggccggctgatggtaaacattgtggagggcatcgagctgaagccctgccgctcccac
ggtaagagcaacccgtactgcgaggtgacgatgggttcccagtgccacatcaccaagacc
ctgcaggacacgctcaaccccaagtggaactccaactgtcagttcttcatcaaggacctg
gagcaggacgtgctgtgtgtcaccgtgtttgagagagaccaattctctcctgacgatttc
ctaggcaggacagagatccgtctggcggacattaagaaggaccagggctccaaagggccc
atcaccaagaggctgctgctccacgaggtgcccacaggagagattgtcgtacgactggac
ctgcagctcttcgaggagccctag
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integrated database retrieval system
