Oncorhynchus tshawytscha (Chinook salmon): 112254122
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Entry
112254122 CDS
T05605
Name
(RefSeq) RNA-binding protein 39 isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112254122
Spliceosome [BR:
otw03041
]
Common components
Common spliceosomal components
General mRNP proteins
112254122
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RRM_7
RBD_DEAH11
PRP38_assoc
CDC45
Motif
Other DBs
NCBI-GeneID:
112254122
NCBI-ProteinID:
XP_024282140
LinkDB
All DBs
Position
LG07:20404226..20460922
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AA seq
534 aa
AA seq
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MADDFDIEAMLEAPYRKDEIKHSSPNGHKERSKKKKNSRSRSRDRKRSKSRDHKKSHDHK
QSRSHERKRSRSRERRRSRERSGRYRDHKTTFSGPKCNGVSRGKIGTPPVIKLSRRRSRS
RSPFKKEKSPVRQVFLGEMTQKTSIRQPIDNLTPEERDARTVFCMQLAARIRPRDLEEFF
SAVGKVRDVRMISDRNSRRSKGIAYIEFVEANSVPLAIGLSGQRLLGVPIIVQASQVMAE
KNRAAAMANNLQKGNAGPMRLYVGSLHFNITEEMLRGIFEPFGKIESIQLMMDSETGRSK
GYGFITFSDTECAKKALDQLNGFELAGRPMKVGHVTERTDASNASSFLDNDELERTGIDL
GTTGRLQLMARLAEGTGLQIPPAAQQALQMGGAIAIGAMAAVSAAMNPAMNMNMNTAMNL
PSQPLATHCFQLSNMFNPRSEDNPGWDVDIQHDVIEECNKHGGVVHIYVDKNSTEGNVYV
KCPSIPAAMAAVNALHGRYFAGKMITAAYVPLPTYHNLFPDSVKATQLLIPLAH
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgactttgacatagaagcaatgcttgaggctccatatcgaaaggatgagatc
aagcacagtagtccaaatgggcacaaggaacgcagcaagaagaaaaaaaatagcaggagt
cgaagcagagacaggaagagaagcaaaagccgggatcacaagaagagccatgaccacaag
cagagccgcagccacgaacgaaagcggagccgcagcagggagaggcgccggagcagagag
cgcagcggccgctacagggaccacaagaccaccttctctgggccgaaatgtaatggtgtt
tccagagggaagattggcaccccacctgtcatcaagctaagccgaagacgttccaggagc
cgaagccctttcaagaaagagaagagtcctgtgaggcaagtgttccttggggagatgacg
caaaagacctcaatcaggcagccaatagacaacctgactccagaggaaagggacgctcgc
acagtgttctgcatgcagctggcagccagaatccgaccacgtgacctggaggagttcttc
tctgcagtgggaaaggtgagagatgtgcgcatgatctctgacagaaattcgaggaggtcg
aaggggattgcttatatcgagtttgtggaggccaactcggtgccactggctataggattg
tctggccagcgacttctgggggtgccaataattgttcaggcctcacaggtaatggctgag
aaaaacagggctgctgccatggccaacaacctgcagaagggcaacgctggcccgatgaga
ctctacgtcggatccttacactttaacatcacagaggagatgctacgaggaatatttgag
ccttttggaaagattgagagtattcagctcatgatggatagtgagacggggagatccaaa
ggatatggcttcatcactttctcagacacagagtgtgccaagaaggctttggatcagttg
aacggctttgagctggctggccggccgatgaaggtgggccatgtgactgagcgcacagac
gcctccaacgccagctccttcctggacaacgacgagctggagaggacaggtatcgacctg
ggcaccactgggcgcctgcagctcatggccagactggctgaaggcacgggactgcagatt
cccccagcagcacagcaagccctgcagatgggtggggccattgctattggtgccatggcc
gctgtatcagctgccatgaatcctgccatgaatatgaacatgaatacagctatgaactta
ccctcacagccacttgctacacactgtttccagctgtctaacatgttcaaccctcggtct
gaagataacccaggctgggatgttgacattcagcatgatgtcattgaggaatgcaacaaa
catggaggagttgtgcacatatacgttgacaagaattccactgaaggcaacgtgtatgtg
aaatgtccatccattcctgctgccatggctgcagtaaacgcattacatggtcgatatttt
gcaggtaaaatgatcacagcggcatacgtccctctcccaacatatcacaaccttttccct
gactctgtgaaggctacccagctcctgatccctcttgctcactga
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