Oncorhynchus tshawytscha (Chinook salmon): 112254131
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Entry
112254131 CDS
T05605
Symbol
sdc4
Name
(RefSeq) syndecan-4
KO
K16338
syndecan 4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04512
ECM-receptor interaction
otw04514
Cell adhesion molecule (CAM) interaction
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112254131 (sdc4)
04514 Cell adhesion molecule (CAM) interaction
112254131 (sdc4)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
112254131 (sdc4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
otw00535
]
112254131 (sdc4)
Proteoglycans [BR:
otw00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
112254131 (sdc4)
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Ortholog
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GFIT
Motif
Pfam:
Syndecan
Motif
Other DBs
NCBI-GeneID:
112254131
NCBI-ProteinID:
XP_024282165
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All DBs
Position
LG07:21232115..21242738
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AA seq
208 aa
AA seq
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MHKVFLVLFLFASVYSESVRETETWMPMKTTQAASHDELVASGDAPSGSDFGFPDEEHDT
FDNEDETDDEDFSGSGDGVTTITIKNDNTMTKPDMNDNKIPDLDIPLRSKPTPNEIELVQ
KNNEVSVRGAPNPEEYPSNVLMAHAGEESIFRKTEVLAALIAGGAVGLLFAVFLVLLLVY
RMKKKDEGSYDLGKKPIYKKAPTTEIYA
NT seq
627 nt
NT seq
+upstream
nt +downstream
nt
atgcacaaagtgttcctcgtgttgtttttatttgcctccgtctactctgagtcggtgcgg
gagactgagacatggatgcccatgaagacgacccaagccgcgtcgcacgacgagcttgtt
gcgtctggtgacgcccccagcggctccgactttggcttccccgatgaggagcacgacaca
tttgacaatgaggatgaaacggatgatgaagacttctctggctctggagatggagtaact
actattacaataaagaatgacaataccatgacaaagcctgacatgaacgacaacaagatt
ccagacctggacatacccctgaggtccaaacccacaccgaatgagattgaactggtccag
aagaacaatgaagtgtcagtgcggggtgctcccaaccccgaggagtacccatcaaacgta
ctgatggcccatgcgggggaggagagcatcttcagaaaaacagaggtcctagcagctctg
attgctggtggagcagtggggctgctctttgccgtcttcctcgtccttctgctcgtctat
cgcatgaagaagaaggacgaaggcagctacgacctgggaaagaagcccatttacaaaaag
gctccgacaacggagatctacgcctaa
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