Oncorhynchus tshawytscha (Chinook salmon): 112254311
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Entry
112254311 CDS
T05605
Symbol
prdm2b
Name
(RefSeq) PR domain zinc finger protein 2 isoform X1
KO
K11432
[histone H3]-lysine9 N-trimethyltransferase PRDM2 [EC:
2.1.1.355
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw00310
Lysine degradation
otw01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
112254311 (prdm2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112254311 (prdm2b)
03036 Chromosome and associated proteins [BR:
otw03036
]
112254311 (prdm2b)
Enzymes [BR:
otw01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.355 [histone H3]-lysine9 N-trimethyltransferase
112254311 (prdm2b)
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
112254311 (prdm2b)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
112254311 (prdm2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-C2H2
zf-C2H2_4
SET
zf-C2H2_6
zf-C2HE
zf-C2HC_2
zf-C2H2_jaz
zf-C2H2_11
zf-H2C2_2
Motif
Other DBs
NCBI-GeneID:
112254311
NCBI-ProteinID:
XP_024282493
LinkDB
All DBs
Position
LG07:complement(28453716..28470578)
Genome browser
AA seq
1761 aa
AA seq
DB search
MAVPGGTMETLADIPHHVWKSLPDGLRLSPSAVDQSRIGVWASRSIPKGKRFGPFVGEKK
KRSQVSSNVYMWEVYFPARGWMCVDATDPMKGNWQRYVNWANSTQEQNLFPMEINRAIYY
KVLRPIGPGDELLVLYNGEDNPEITAALEEERGSSLSKKNSPRAKRARRKLLEGARQAGL
GAFRGPKQTGVTKPILKEMWDTEEGPNEEDERLSQSPGPSKGTRESSPMGRNGLSQAQFI
SAAMRGEAEEDDEEEDPGDLQQPLSLTQQSAQSATEAEPEERSEQPDLPLSHSSPVEEGP
GSLQHDTETASSLPRAEPEADPDPDPDLEGDPHGEESHPCQHCERHFSTKQGLERHTHIH
ATANQQTHTFKCRYCGKSFGSQVGRRRHERRHENGPKNKGQRPGSLAGTATLLTPLGQAG
GSSPDCGTVSGHYVVRGSPVPGGPMGSLEVVKKDPAAESDRPFIVDENGETKELHPCKYC
NKAFGTHTNMRRHQRRIHERHLLPKGVRRKGMLLQESPSQQQLHHLPEQSHSVSPPLVYV
PSADTEDEGDREEYLVDIANNISENLSLYIDGKILSTSSVSGCEVIEVDSSSAALFGLDT
VVISPNQISQALKVDTRTCAVRQVSNLGQPMSKRRTSTPPLMPSLKMESETGSSSASSSS
STSSSSTLLVGSVFPQSSDSLAFQKEKTIYLSPKLKQLLQTQTDSQKPAIALIAERHRLA
PPLSVTSLPAASGRFKRRTSSPSSPQLSPALKANGCKNEAGVSSYTLKVPNLETLGMSPA
WSLSSKEERDALSPSGKNGCSWSASRTGGNSCNQQPLDLSSGISKRRDSFNKTPGEVVLD
LSMSRKSTAESKGSPSPAQPPTKKKKPNTSMLEKVLMNEYAGLNPAEEEGSSPLGSPDSQ
YTAGSGTGTASHSPSSNLPSESAHPSPPSLTPVTMNPSSPCGSSLTSPTPPPPVLPTMPS
PDCPTLISSLPVLSHKMSPRSIDQGEDEPVCISNSTTADTMLAAVSNSYGDEEHINKPID
SNPDPLTREAISSPSTETSLVSDAVALSLSSTQSKPARTGNQLDVQVNQDLEPIITEGQE
KSQCSELPVLSSVTESLLSASSTSPAAISDIPAPPVVSPPSLSSTVIKGDPQHSEQLADL
VLSPSGTGSSPLSAAADKPSSLSEEEEGSPPEPFSKSFVCNVCEDPFRAIKELSRHILEH
AAEWPYKCEFCVQLFGNAPALLEHRTALHGVGRVFVCSVCSKEFAFLCNLQQHQKDLHPS
QPCTHTAVENGKPRPQNYTDPARAKEESNSSSTVATGPESSPEVASSQGVSDVKKEEPDT
NGKHEEDGLEDLTEELYTTIKIMASEGGKPKGPDVRLGINQHYPSFKPPPFPYHNRTAAG
SVASATNFTTHNIPQTFSTAIRCTKCGKSFDNMPELHKHILACANASDKRRYTPKKNPIP
LRQIVKPQNGSLSPASAANAGHNAFRRMGQPKRLNFNQEPLGKTKMSSLGKKKSQLVQKA
VGQRNETAATVNKAPSQVKQEEPQEQEVHVCPHCSREFTYPASLNKHIAGSCPMKPVSKK
AKKGAATEATPAVDKNMSLRRRTTDSEIQQPEPAEPVPKTLSKTRSRNSGPGPAEAEAPP
LVGKGKMAATQVCTKRPASFPAATVSLSKKSKKGKVQSLPPTPLPSESPSDSALRPAAQT
KQRMGKEVPPKKGAEVKSPPQQQSQVPSKKEGERFSLRARERAVGPVTRSLQMANTAAPV
EVKTDDLSSQEPEETQEYLLK
NT seq
5286 nt
NT seq
+upstream
nt +downstream
nt
atggctgttcctggagggacaatggaaacgcttgctgacattccacaccatgtgtggaag
agcttgcccgatggcctgagactaagcccctctgctgttgatcaaagtcgaattggtgtc
tgggcctctaggtcgattcctaaaggcaagaggttcggcccttttgtaggagagaagaaa
aagcggtcccaggtgtccagcaatgtatacatgtgggaggtgtattttccagccaggggc
tggatgtgtgtggatgccacagaccccatgaaggggaactggcaacggtatgtaaactgg
gctaactccactcaagaacagaatcttttccccatggagataaaccgagccatttactac
aaagtgttacggccaattgggccaggggatgagctgctggtgttgtacaatggggaagac
aaccctgagataacagctgcactagaggaagaaagaggcagcagtctgagcaagaaaaat
tcacccagggcaaagcgagccagaagaaagctgttggagggagcaagacaggctggtttg
ggtgcattccgtgggcccaagcaaacaggcgtaaccaaacctattctcaaagagatgtgg
gacacagaggaaggtccaaatgaggaagacgagagactctcccaatcaccagggccttcc
aaggggactcgggagagctcccccatggggaggaacggcctctctcaagcccagttcatc
tcagcagcaatgagaggggaagcggaggaggatgatgaagaggaagacccaggggatctg
cagcagccgctgtcactgacacaacagagtgctcagtctgctactgaagctgagccagag
gagaggagtgagcagcctgatctgccactaagccatagcagcccagttgaggaggggcct
gggagccttcagcatgacactgagactgcctcatcgctaccaagggctgaaccagaggca
gaccctgaccccgaccctgacctggaaggtgacccccacggagaggagtcccatccctgc
cagcactgcgagcgccatttctccaccaaacagggcctggagcgccacacacacatccat
gccaccgcaaaccagcaaacgcacacgttcaaatgccgttactgtggcaagtctttcggc
tcgcaggtggggcgtcggcggcacgagcggaggcatgagaacgggccaaaaaacaaaggc
caaaggcctggctcactagctgggactgctactttactcactcctctggggcaggctggt
ggttcgagcccagactgtggcactgtctctggccactatgttgtcaggggctcccctgtc
cctggaggacctatggggagccttgaggttgtgaagaaggaccctgcggctgagagtgac
cggccgtttatcgtggatgagaatggtgagacaaaggagcttcatccctgcaagtactgt
aataaggctttcggcactcacaccaacatgcgcagacaccagcgcagaatccacgagcgc
cacttactgcccaagggtgtccgcaggaaaggcatgctgctgcaggagagcccatctcag
cagcagctgcatcatctgcctgaacagtcccatagcgtcagcccacccctcgtctatgtg
cccagtgcagacactgaggatgagggggaccgagaggagtacctggtcgacatagccaat
aacatctcggagaatctcagcctgtacatcgacggcaagatcctgtccactagttcagtc
agtggctgtgaggtgatcgaagtggactccagttctgcagcactgtttggtctcgacaca
gtggtcatcagccccaatcagatcagtcaggctctcaaagtggataccaggacatgtgct
gtgaggcaggtctcgaatctcggccagcccatgtcgaaaaggagaacgtcgacacccccg
ctcatgccaagtcttaaaatggagtctgaaactgggtcctcttccgcctcctcttcctcc
tccacgtcttcctcatccaccttgttggtgggaagtgtcttccctcagtcctcagactca
ttagcatttcaaaaggagaaaacgatctatctgtctcctaagctcaaacagctcctccag
actcagacagacagtcagaaacctgccattgccctgatagcagagaggcacagattagct
ccccctctctccgttacgtctctgcctgcagcctcaggcaggttcaagagaagaacatct
tccccctcatctccacagctcagccctgcgctgaaagcaaacggctgtaagaacgaggcg
ggggtctcgtcgtacaccctcaaggtgccaaatctggagaccctgggcatgtcccctgcc
tggagtctgtccagcaaggaggagagggacgcactgagtcccagcgggaagaacgggtgc
agctggtctgcctctcggaccggagggaactcgtgtaatcagcagcccttggatctgtcc
agcggcatcagtaagaggagggacagcttcaacaagacgcccggggaggtagtgctggat
ttaagcatgagtcggaagagtacagcagagtctaagggaagtccatctccggcacagccc
cccaccaagaagaaaaagcccaacaccagcatgctagagaaggtgttgatgaacgagtac
gccgggttaaacccagcagaagaggaaggctcttctcccctgggaagcccagattctcag
tatactgcaggcagtggtacaggtaccgcatctcacagtccctcttccaatctgccctct
gaatcagcccatccctctcccccctctctaacgcccgtcacgatgaacccctcctcccct
tgcggctccagcctgacctctccaacgccacctccccctgtcctacccaccatgccctca
ccagactgccctacgctcatcagctctctccctgtcctctcccacaaaatgtcccccaga
tctatcgaccaaggtgaggacgagccagtttgcatatcgaactctaccacagcagataca
atgttagctgcagtaagtaacagttatggagatgaggaacatatcaataagccaatagac
tctaatccagatccccttaccagggaagctatttcaagcccctctacggagacctccttg
gtatctgatgctgtcgctctgagtctgtcctcaacacaatcgaaacctgctaggactggg
aatcagctggatgtccaagtgaatcaagacctggaaccgattattactgagggacaggag
aaatcccaatgctctgaactccctgtattatcatccgtaacagaatccctcctctctgcc
tcatcgacctcacctgctgccatatcggatatcccagctccaccagtggtctccccgcca
tctctctctagcactgtgattaaaggggatccccagcacagtgaacaactggctgactta
gtcctttctcctagtggcacagggtcttcacctctgtctgctgctgctgacaaaccctcg
tcgttgtcggaggaggaagagggatcgccgccagagcccttcagtaagagctttgtgtgt
aatgtatgtgaggaccccttccgcgccatcaaagagctcagtcggcacatcctagagcac
gcagctgagtggccctacaagtgtgagttctgcgtgcagctgttcgggaacgcccctgct
ctgctggagcaccgcacggccctccacggagtgggacgcgtctttgtctgctccgtctgc
tccaaggagttcgccttcctctgcaacctccagcagcaccagaaggacctgcatcccagc
cagccgtgcactcacacagcggtggagaacggcaagcccaggccacagaactacacagac
ccagccagggccaaagaggagagtaactcctcctcaaccgtagccacagggcctgagtcc
tctcctgaagttgcttcctcccagggggtctctgatgtgaagaaggaggagcctgatact
aacgggaagcatgaggaggatggactggaggacctaactgaagagctgtacactactata
aagatcatggcctctgagggaggcaagcctaaaggcccagacgtacgcctgggcattaat
caacactaccccagtttcaagccaccccccttcccctaccacaaccgcactgctgcaggc
tctgtggcctcggctaccaacttcactacccacaacatcccccagacattcagcactgcc
atccgctgcaccaaatgcggcaagagtttcgacaacatgcccgagctgcacaagcacata
ctagcctgtgccaacgccagtgataagaggcggtacactcccaagaagaaccccatccct
ctgagacagatagtgaagccccagaacggctctctgtcgcctgcctctgctgctaacgca
gggcacaacgccttccgcagaatgggccaacccaagaggctcaacttcaaccaagaaccg
cttggcaaaaccaagatgagttccctcggtaagaagaagagccagctggttcagaaggcc
gtcgggcagaggaatgagactgcagctactgttaacaaggcccctagccaggttaaacag
gaggagccgcaagagcaggaggtccacgtatgccctcactgcagccgagagttcacctac
cctgccagcctcaataaacatatagcaggcagctgtcccatgaagccagtctctaagaag
gccaaaaagggagccgcaacagaggcaacaccagctgtagacaaaaacatgagccttcga
cggagaaccacagactctgagatccagcagccagaaccggctgagccggttcccaaaacg
cttagcaaaactcggtctcgcaactctggacctggccctgcggaggctgaggccccacca
ctggtgggtaaaggaaagatggctgccacacaggtgtgcaccaagaggccagcctctttc
ccagcagccacagtttctctcagcaagaaaagtaaaaaaggcaaagttcaatcgttaccc
cccaccccgttgccctccgagagtcccagtgactctgcactgcggccagcagctcagaca
aagcaacgcatgggcaaggaagtgccacccaagaagggagcggaggtgaaatcgccccca
cagcagcagtctcaggtgccgtctaagaaagaaggggaacggttctctctgagagcgagg
gagcgggctgtcgggccggtgacccggagcctacagatggccaacactgcagctcctgtg
gaggtgaaaacagatgacctgtccagccaggagcctgaagagacccaggagtacttgctg
aagtga
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integrated database retrieval system
