Oncorhynchus tshawytscha (Chinook salmon): 112254395
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Entry
112254395 CDS
T05605
Name
(RefSeq) cadherin-4
KO
K06797
cadherin 4, type 1, R-cadherin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
112254395
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112254395
Cell adhesion molecules [BR:
otw04515
]
Cadherins
Major cadherins
112254395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_pro
Cadherin_4
Fibulin_C
He_PIG
Stevor
DUF5527
Motif
Other DBs
NCBI-GeneID:
112254395
NCBI-ProteinID:
XP_024282722
LinkDB
All DBs
Position
LG07:33064259..33329213
Genome browser
AA seq
926 aa
AA seq
DB search
MNLGSVLILTCTLVVDTSWATKADQPPKPPCRPGFSESFYTVFVSRDLLQGQYILKDTTL
SSERVKFDDCQHSKSVDFESSDPNFSVRPDGSVYAEQEVANLSDPVQFMVTARGGHDPHI
WETTVKLALAGHPPSVPVSQIGLEDMIARAWDSNPRVIKFPRKHQRSSSANGLRRQKRDW
VIPPINVPENSRGPFPQMLVRIRSDQDLEKGIRYSITGAGADQPPIDVYNIDPVHGKMFV
TRPLDREERASYHLRAHAVDMNGNKVESPIDLYIYVIDMNDNRPEFQNQVYNGSVAEGSK
PGTLVMQVTANDSDDDTTANGMVRYRILSQTPHMPIPNMFTINSETGDIFTVAAGLDREK
VSQYTIIVQATDMEGNLNFGLSNTATALISVTDINDNPPELTARTFSGEVPENRVNVVVA
NLTVIDRDQPHSPNWAAQYRIASGDPQGHFLIRTNPVNNDGMVTVVKPVDYEQNRAFMLT
VIVSNKAPLASGIQSSLQSSAGVTISVQDVNEPPVFPSNPKSIRFEEGVPAGTTLTVFAA
QDPDLFIHQTVRYSKLSDPANWLRINRTNGQITTMAVLDRESMYVRNNIYEATFLAADNG
SPPASGTGTLQIHLIDVNDNAPVLLPKEAQVCERASPRSRVNITASDADADPHVGPFVFE
LPSYPPSVRRNWTASRISGDYAQLRLRIPYLDAGVYEVPIIVSDSGNPPLSNRSMIKVKV
CPCDDNGDCTTTGAVAAAGLGTGAIIAILICIIILLTMVLVFVMWMKRREKERQAKPLLI
DPEDDVRDNILKYDEEGGGEEDQDYDLSQLQQPEALDHIICKPTGVRRVDERPVIAESQY
PIRPSLPHPGDIGDFINDGLRAADNDPTAPPYDSLLVFDYEGSGSTAGSVSSLNSSSSGD
QDYDYLNDWGPRFKKLADLYGGGDDD
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaggctccgttcttatactgacgtgcaccttagttgtggacacatcttgggcg
accaaggcagaccaaccacctaaacccccatgcagaccaggcttttccgagagcttctac
acagtctttgtctctagggatctactgcaaggccagtacattctcaaagacaccaccctg
tcgagtgaacgtgtgaagtttgacgactgtcagcacagcaagtctgtggacttcgagagc
agcgaccctaacttcagtgtgcgtcctgacggctcggtgtacgctgagcaggaggtggcc
aacctgtctgatccagtccagttcatggtgaccgcccgcggaggtcatgaccctcatatc
tgggagaccacggtcaagctggccttggctggccacccgccttctgttcctgtgagtcag
attggactggaggatatgattgcaagggcctgggactctaatcccagggttatcaagttt
ccacggaaacatcaaagaagctcttctgccaatggtctgagacgacagaagcgagactgg
gtcatcccaccaatcaatgtgcccgaaaactctagaggacccttcccacaaatgcttgtc
agaatccgctcggaccaggacctggagaaagggatccgctacagcatcactggagcaggg
gcggaccagcctcccattgacgtgtacaacattgaccctgtgcacggcaagatgtttgtc
accagacccctggacagagaggagagggcctcctaccatctgcgggcccatgctgtggac
atgaacgggaacaaggtggaaagccccatagacctgtacatctacgtcatcgacatgaat
gacaaccggccagagttccagaaccaggtctacaacggctctgtggctgaaggctctaaa
ccaggcacgttagtgatgcaggtgaccgccaacgactcagatgacgacaccacagccaat
gggatggtgcggtaccggatcctatcccagaccccccacatgcccatccccaatatgttc
accatcaacagcgagacgggagacatcttcacagtcgccgccggcttggacagggagaaa
gtgtcccagtacaccatcatcgtccaggccacggacatggaggggaacctgaactttggc
ctgtccaacacggccaccgcactcatctctgtgaccgacatcaacgacaaccctcccgag
ctgaccgccaggacgttttcgggggaggtcccagagaacagggtgaatgtggtggtggcc
aatctgacagtgattgacagggatcagcctcacagccccaactgggctgcccagtaccgc
atcgccagcggagacccccagggtcacttcctcatccgcaccaaccctgtcaacaatgac
ggcatggtcactgtggtcaagccagtggactatgagcagaacagggccttcatgctgaca
gtgatagtctctaacaaggcccctctggccagtgggatccagtcttctctccagtcttca
gcgggggtcaccatctccgtacaggatgtcaacgaaccccctgtcttcccttccaacccc
aagtccatccgcttcgaggagggtgtccctgcaggcaccacactcaccgtgtttgctgcc
caagaccctgacctcttcatccatcagactgtccggtactcaaagctgtctgacccagct
aactggctgaggatcaacaggaccaacggtcagatcaccaccatggccgtgctggacagg
gagtccatgtatgtcaggaacaacatctatgaggccaccttcctggctgccgacaatggc
tctcccccagccagtgggacaggcaccctacagatacatctgatagatgtgaatgacaac
gctccagtgctgttgcccaaggaggcccaggtgtgtgaacgggccagcccccgctccagg
gtcaacatcacagcctccgacgccgacgctgaccctcacgtggggccttttgtgttcgag
ctgccctcctacccccctagtgtccgacgcaactggactgcctcccgcataagcggtgac
tatgcccagctgagactgaggattccctacctggatgcaggggtgtatgaggttcccatc
atagtgtcggactctgggaacccgcccctctctaacaggtctatgataaaggtcaaggtg
tgtccgtgtgacgacaacggagactgtactaccaccggagctgtagctgccgctggactg
gggaccggagcgatcatagccatactcatctgtatcatcatactgcttacaatggtactg
gtgtttgtgatgtggatgaagcgcagggagaaggagcgtcaggccaagcccctgttgatt
gacccagaggacgacgtcagagacaacatcctgaaatacgatgaggagggaggaggagag
gaggaccaggactatgacctaagccaactgcagcagcccgaggctctggaccacatcatc
tgtaaaccaacgggggtgcgcagggtggacgagaggcctgtcatcgctgagtcccagtac
cccatcagacctagcctgcctcatcccggagatattggagacttcatcaacgacggtctg
agggcagcagacaatgaccccacagccccgccctatgactccctgctggtgtttgactat
gagggcagcggctccacggccggctctgtcagctccctcaactcctcaagctcaggggac
caggactacgactacctcaatgactggggcccccgcttcaagaagctggctgacctctac
ggcggaggagacgacgactga
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