Oncorhynchus tshawytscha (Chinook salmon): 112254485
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Entry
112254485 CDS
T05605
Symbol
chd5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112254485 (chd5)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
112254485 (chd5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
HTH_Hrp3
DEAD
PHD_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
112254485
NCBI-ProteinID:
XP_042180325
LinkDB
All DBs
Position
LG07:complement(39685831..39722741)
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AA seq
2056 aa
AA seq
DB search
MPGSLSNEDEGQEDMDFEDEIPDEDEDGQRNTVPLTPLDSFFTDNDSLKQKKKKPKKMKE
GKMPKVKKRKKEGGGGGGVGGGGSDLKEQIPEREDDRPLQGPEIGSESESSIYAPTTKKK
KKPKDKKEKKPKRKKREEEEEDDDDDDDEDDENNKEPKSSSQLMQEWGLEDVQYGFTEED
YTTLTNYKAFSQFLRPLIAKKNPKIPMSKMMTVLGSKWREFSANNPFKGTSATAVAAAVA
AAVETVTVASPTSVKEITTLSSSQPGQIRKAKTKEGKGPGVRRKTKTVKEVKKKSKGRKT
KSKKKASSSEEDFGLEESDFDDVSIHSASVRSDTSGNAKKKARKGRKKRKREDGDGYETD
HQDYCEVCQQGGEIILCDTCPKAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEAKDDDD
EEEEVAVEEEDDHLEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCMC
PPPKGKVQRILHWIWGDPPLPSEVPPGPDGETVDPLVKPPLKGHPERELFVKWAGLSYWH
CSWVSELQLELYHAVMYRNYQRKNDMDEPPPYDYGSGEEELNNEKRKSKDPEYAAMEERF
YRYGIKPEWMVIHRILNHSYDKDGDVHYLIKWRDLPYDQCTWEVDDFDVPEYHHAKHSYW
DHREQMIGDDQRPLVVRKGKKGKEEEKRREREIPPNAPIIDPTIKFEHQPWYINATGGTL
HPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLST
IINWEREFEMWAPDFYVVTYTGDKESRAVIRENEFTFEDSAVKTGRKVFRMKKDTAIKFH
VLLTSYELITIDQTILGSINWACLVVDEAHRLKNNQSKFFRILNGYKIYYKLLLTGTPLQ
NNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNM
PSKTELIVRVELSPMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFP
VAAVEAPVLPNGSYDGNQLVKSSGKLTLLQKMLKKLKDEGHRVLIFSQMTKMLDLLEDFL
EYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDS
DWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSK
TGSMSKQELDDILKFGTEELFKDEMEAAARAMGSHQKLCKNNGDIKDGDEGSVIHYDDNA
ISKLLDRSQNATEDTEIQNMNEYLSSFKVAQYVVKDEDAEEEPQREIIKQEENVDPDYWE
KLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDTSQEDQEWQDDLSDNHSEYSVGSEDEDE
DFEERPEGGRRHSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRWGMPP
QDAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTR
IGVMSLVRKKVQEFEHVNGKYSTPDLIPIGLELKKLTESLSSDPNTPVPASPAATPQPPG
SPVPQEKMDSISGPAEDKEPTEQECKKLPELETHVSTESSSQVEKTDIAPDSDETEKGST
EDKPVSSEESSEMTDIPSALIEPSINPEEPPSIQTELLSNQSSPKAEPCRETEKSLEKGD
SDPAPTKPEEKELNPVISDEAKSEDLLVPEGRLNGEKETQEEMEEVRRELLEKNGFKMRF
MFNIADGGFTELHTLWQNEERAAVSSGKMYDIWHRRHDYWLLAGIVTHGYARWQDIQNDP
RYAIHNEPFKTEMHKGNYLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNMTQDPSHPAM
ALNTRFAEVECLAESHQHLSKESLAGNKPANAVLHKGLSSPSVYTAAGLKHCLQTQDLVL
NQLEELLSDMKADVTRLPNMLSRIPPVSSRLQMSERSILSRLTSRGNEPPPQQPFGQGSF
ACSQMYSTGFGGSFRGPAGEAMVNYSQMPLGPYVSVSNGPPPPSSHLDKKSCDHLRDVTT
PDLKSGKPSDVICIED
NT seq
6171 nt
NT seq
+upstream
nt +downstream
nt
atgcctgggtcgttaagcaatgaagacgagggacaagaggacatggattttgaagacgaa
ataccagatgaggatgaggatggtcaacgtaacactgtcccgctcacacctctggacagc
tttttcactgacaacgactccctcaaacagaagaagaagaaacccaaaaagatgaaggag
ggcaagatgcccaaagtcaagaagaggaaaaaggagggaggaggaggtggaggagtagga
ggtggtggcagtgacttgaaggagcagatccctgagcgggaggatgaccgtccactgcag
ggtccagagattggctcagagagcgagagcagcatctacgcccctaccacaaagaagaag
aagaaacctaaggataagaaagagaagaaacccaaacggaagaagagagaagaggaggag
gaggatgacgatgatgatgatgacgaagatgatgaaaataataaggagcccaagtcgtcc
agtcagctgatgcaggagtggggtctggaggatgtgcagtatggcttcacagaggaggac
tatacaaccctcaccaactacaaggccttcagccagttcctcaggccacttattgccaag
aagaaccctaagatccccatgtcaaagatgatgacagtgttagggtccaagtggcgagag
ttcagcgccaacaaccctttcaaaggcacctctgcaactgctgtggctgctgcggtggct
gctgccgtggaaacggtcaccgtggcctcgcccacctctgtcaaagagatcactacactg
tcaagctctcagcctgggcaaatcagaaaagccaaaaccaaagagggaaaggggcctggg
gttcgacggaaaacaaagactgtaaaggaggtaaagaagaaaagtaaagggaggaagacc
aaatcaaagaagaaagcatcctcgagtgaggaggactttgggctggaggagtcggacttt
gatgatgtcagcatccacagtgcctcggtgcgctctgatacctcagggaatgccaagaag
aaagcccggaagggtcggaaaaaaaggaaaagagaggatggggacggctatgagacagac
caccaggactactgtgaggtgtgccagcagggaggggagatcatcctgtgtgacacctgt
cccaaagcctatcacctggtgtgtctggaccctgagctggagaaagctcccgagggcaag
tggagctgcccccactgtgagaaggagggcatccagtgggaggccaaagatgatgacgat
gaggaagaggaggttgcggttgaggaagaggacgaccacctggagttctgcagagtgtgt
aaagacggaggggagctgctgtgctgtgacacctgcccctcctcctaccatatccactgc
ctcaacccgccactgcctgagatacccaatggggagtggctgtgcccacgctgcatgtgc
ccacctccgaaggggaaggtacagagaattctccactggatttggggggaccccccctta
ccatctgaggtgccccctggccccgatggagagactgtggacccgctggtaaagcccccc
ctgaagggccacccagagagggagctgtttgtcaagtgggctggtctctcctactggcac
tgctcctgggtcagtgaactgcagttggagctgtaccacgcggtgatgtaccgtaactac
cagaggaagaacgacatggacgagccccctccatacgactacggctctggggaggaggag
ctgaacaacgagaagaggaagagtaaagacccagagtacgctgccatggaggagagattc
taccgctacggcatcaagccagagtggatggtcatccacaggatcctcaaccacagttat
gataaggatggggatgtgcactacctgatcaagtggagagacctgccctatgaccagtgc
acctgggaggtggatgactttgacgtccctgagtatcaccacgccaaacactcctactgg
gaccacagggagcagatgattggtgacgaccagcgccctttagtggtgagaaagggaaag
aagggcaaagaggaggagaagaggagggagagagaaatccctcctaatgctccaatcata
gatcctaccatcaagtttgaacatcaaccgtggtacatcaatgccactgggggaaccctg
cacccgtaccagctggaggggttgaactggctgcggttctcctgggcacagggcacagac
actatcctggcagacgagatgggcctgggcaagactgtccagaccatcgtgttcctctac
tcactctacaaggagggtcactccaaagggccatacctggtcagtgcccccctgtccacc
atcatcaactgggagagggagtttgagatgtgggccccagacttctacgtggtgacctac
actggggacaaagaaagccgggcggtcatccgggagaacgagttcaccttcgaggacagt
gcggtcaaaacaggccgcaaggtcttccgtatgaagaaagacacggccatcaagttccat
gtgttgctgacgtcatatgagctaatcaccatcgatcagaccattctgggctccattaac
tgggcctgtctagtggtggacgaggcccacagactgaagaacaaccagtcaaagtttttc
agaattctcaatgggtataagatctactataagctgctactgactggcactcctctgcag
aacaacctggaggagctgtttcacctgctcaacttcctcaccccagagagattcaataac
ctggaggggttcctggaggagtttgcagacatctccaaggaggaccagatcaagaagctg
catgatctgctgggcccacacatgctcaggagactgaaggctgacgtcttcaagaacatg
ccttcaaagacagagctcattgtacgagtggagctcagccccatgcagaagaagtactac
aagtttatcctgacgcggaactttgaggcactcaactccaagggcgggggcaaccaggtg
tccctgctcaacatcatgatggacctgaagaagtgctgcaaccacccctatctgttcccc
gtggcagccgtggaggcaccagtgttacccaatggctcttatgatgggaaccagctggtc
aagtcctcaggcaaactcaccctgctccagaagatgctgaagaaactcaaagatgaagga
cacagagttctcatcttctcccagatgactaagatgctggatctgcttgaggactttctg
gaatacgagggctacaaatatgaacgcattgatggaggcatcacagggggactacgacag
gaggctatcgaccgcttcaacgcaccgggtgctcagcagttctgcttcctgctctccacc
cgagctggaggcttgggcatcaacctggccacggcagacaccgtcatcatctacgactca
gactggaaccctcacaacgatatccaggcattcagcagggcccaccgtataggtcagaat
aagaaggtgatgatctatcgctttgtgacgcgagctagcgtggaggagcgcatcacccag
gtggccaagaggaagatgatgctgacccacctggtggtgaggcccggcctgggctccaag
accggctccatgtccaaacaggagctggacgacatcctcaagttcggcacagaggagctc
ttcaaggacgagatggaggcagctgcacgggccatgggttcgcatcaaaaactctgtaag
aataatggggacataaaggatggagatgagggcagtgtcattcactatgatgacaatgcc
atctccaagctgctggaccgtagccagaatgccacagaggacactgagatccagaacatg
aacgaatacctcagctccttcaaggtggcccagtatgttgtcaaagacgaggacgcagag
gaggagccccagcgggagatcattaagcaggaggagaatgtggatccagactactgggag
aagctgctgaggcaccactacgagcagcagcaggaggacctggcccgcaacctgggcaaa
ggcaaacgcatccgcaagcaggtcaactacaacgacacatctcaggaggaccaagagtgg
caggatgatctttcagacaatcattccgagtactccgtggggtccgaggacgaggacgaa
gatttcgaggagaggccggaaggtgggcgcaggcattctcgcaggcagctgaagagtgac
agggacaaacctctgccacccctgctggcacgcgtagggggcaacatcgaggtgctgggg
ttcaacgcccgtcagcggaaggccttcctcaatgctatcatgcgctggggcatgcctcct
caggacgccttcaactctcactggctggtcagagacctgagagggaaaagtgagaaagag
ttcagggcctacgtgtccctgttcatgagacatctttgtgagcccggggcagacggggcg
gagacctttgcagatggggttccacgagaagggctgtcccgtcagcatgtcctcaccagg
attggggttatgtctctggtcaggaaaaaggtccaggagtttgagcatgtcaatgggaaa
tacagcactccagacctgatccctattggactggagctgaagaaactgactgagagtctg
tcctctgaccccaacacccccgtccctgctagccctgctgccacaccccagcctcctgga
agtcctgtcccacaagagaagatggactcgatctcagggcctgctgaagacaaggagccc
acagaacaggaatgcaagaagctaccagaactggagactcatgttagtacagagtcatca
tcccaggtagagaagacggacatcgctcctgacagtgatgagacagagaaaggcagcaca
gaggacaaaccagtctcatcggaggagagtagtgaaatgacagacataccctccgcactg
atagagccatccatcaatcctgaagagcctccatccatacagacagagctgttgtccaat
caaagctcaccaaaagcggaaccctgtcgagagacagagaagtccttagaaaaaggagac
agtgatcctgctccaaccaaacctgaggagaaggaactgaatccagttatttcagacgag
gccaagagcgaggacttgctcgtgcccgagggacggctgaatggagaaaaagaaacacag
gaggagatggaggaggtcaggagggaattactggagaagaatggtttcaagatgaggttc
atgttcaacattgccgacggaggcttcacagagctgcacaccctgtggcagaacgaggag
cgggctgccgtgtcatctgggaagatgtatgacatctggcaccgtcgccacgactactgg
ctactggctggcatcgtaacacatggctatgcccgctggcaggacattcagaacgaccca
cgctatgccatccacaatgagcccttcaagactgagatgcacaagggaaattacctggag
atgaagaacaagttcctggctcgtcgctttaagctgttggagcaggctctggtgatagag
gagcagttgaggagggcagcgtacctgaacatgacccaggaccccagccacccggccatg
gccctaaacactcgctttgctgaggtggagtgtctggctgagtctcaccagcacctgtcc
aaggagtctctggctggaaacaagccagccaacgctgtgctgcacaaaggtctgtcatct
cccagtgtgtacacagcagcaggactaaaacactgtctacaaactcaagatctggtactg
aaccagctggaggagctgttaagtgacatgaaggcggatgtgacgcggcttcccaacatg
ttgtcccggatccccccagtgtcttcgcgtctgcagatgtctgagaggagcattctcagc
cgcctcaccagccgcggcaatgaacctccgccccaacagccgttcggccagggctcattt
gcctgttcccagatgtacagcactggctttgggggcagtttccgggggcctgcaggtgag
gccatggtcaactatagccagatgcccctgggaccctatgtcagtgtgtccaacggcccc
cctcctccatccagccacttggacaagaagtcctgcgaccacctgagggatgtcaccacc
cctgaccttaagtcaggcaagcccagtgatgttatctgtattgaagattag
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integrated database retrieval system
