Oncorhynchus tshawytscha (Chinook salmon): 112254599
Help
Entry
112254599 CDS
T05605
Name
(RefSeq) VPS10 domain-containing receptor SorCS3 isoform X1
KO
K27083
VPS10 domain-containing receptor SorCS3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112254599
Membrane trafficking [BR:
otw04131
]
Endocytosis
Others
Others
112254599
Endosome - Lysosome transport
112254599
Endosome - Golgi transport
112254599
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
GBP_PSP
DUF6085
Motif
Other DBs
NCBI-GeneID:
112254599
NCBI-ProteinID:
XP_024283080
UniProt:
A0A8C8BV47
LinkDB
All DBs
Position
LG01:62308934..62375299
Genome browser
AA seq
1244 aa
AA seq
DB search
MVISGSVWCWAILTCVLSSFYNMLTAYAEINWPASSTTTNVWLNRVDTLPLELRTNLKSV
WVKIPKDIVKESAFSRAFQMEPIDGKPAVPKGGGRLPKDLKRVIGKVTPDAISSGRDTTA
PNRSKYFTDDRKKSDRFFDVNDGTLALSNRTKRSTAYGEYSDRGQIGGPGDAFSAEKILE
PFGVYSPRTEYRRTGEDARTGPRQSESLLVTSTFPLSGDSAHNQAMGHWVGDNSSVILTL
TKQYDFNLGAFTESSLWRSVDYGSTYIKLNNKVGSTLACLYVCPTNKRKIMMLSDPELEH
SVLISSDEGASFEKHPINFYMDGLLFHPTQENWLLASSPDNKVYSTMDFGRKWQLVSENV
TPGRFFWAQTGLDREADMVHMETHIAKGRAQYVTCRAQRCTESNRQYLFPGHIDQNSLVV
QDNYVFVQVTKSGQASYFVSYMRESFKQIQLPKYCLPKDMHIISTDKKQVFAAVQEWNQN
DTYSLYISDSPGVYFTLSLENLRTRREPGGNVLVDMYKVEGINGIFFANKLVDHEVKTFI
TYNKGQTWALLQAPNTDVAGNSLHCILPFCSLHLHLDMPVNPYLPGRIFSKDSAPGIIVA
TGNIGTELSSTSLGMFITSDAGNSWRQIFEEELGVWFLDNGGALVAVSLVATVPIRHIWI
SLDEGKTWDRHSFSLVPLFLDGALMQPENHIITFTGHLSRISEWQLIKIDYKAIFSRRCM
DGDYQTWNLHNKGEPCVMGEKQTFMKRRPGNRCMLTQDYSRVISSEPCICRAYDFECDYG
YERQADGKCSPAFWFDPNTVPRSCSTSQNYLNSTGYRKVLSNNCKEGGKDVYSPRKQHCS
PRPPRGLRLTTSHGDLTANLGSNITFLVHLDDGNSLWTHIQLDFGDGITVMYNLSRRGDG
IKHSYRAPGIFRVTAHAENSQGYDSSSMFLHITSPVERVYLSAPVVAIRKKEANLTAVVW
PVHQRTLTFFWWFENSSESLITLGGSIAYTFQKEGMNRVVVQVSSGCNILQDTKVIIVKE
FFKSLLLSFSPTLDEHNPDIPEWREDVGRVVRTAVSQVSGFPEEQLLVSLFPGVPTTAEL
FILPETHLSEYGKRNEEGLVSISDILINALNQGLIQFELKPDTQIIVYITQLTSAPLVDS
NPIHSSSAMLMSLSVAFVGLVAFFIFKFKRKIPWIHVQAEENQEKEPERIGTVRQNNTMS
KMKNSEFPSEKELTEKELEARTRGEDGRNGERVITREFPTCTNV
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atggtcatctcaggttcagtttggtgttgggctattttgacttgcgttttaagctctttt
tacaatatgttgacagcatacgctgaaataaattggccagcgagttccacgacgacgaac
gtttggcttaaccgtgttgatacattgcctttggagctgcgcacaaacctaaaatccgta
tgggtcaaaatcccaaaggatatcgtcaaggaatctgccttttccagagcttttcaaatg
gaaccaattgatggaaaaccggcggttccaaaaggtggagggagattaccaaaggacttg
aaaagagttattgggaaagtgacacctgatgctatatcttctggcagagatacaactgcg
ccaaaccgttccaagtattttactgatgacagaaaaaagtcggaccgtttttttgacgta
aatgacggcacacttgctttaagtaaccgtacaaagcgaagtacagcctacggcgaatat
tcggacaggggtcaaattggaggtcctggtgacgcattttcagccgagaagattttggag
ccttttggtgtttatagtccgaggacagaataccgacgaactggggaggacgcaagaact
ggtccgaggcaaagtgagtcgcttctggtcacctctactttccctctatccggagactct
gcgcacaaccaggcgatggggcactgggttggagacaacagcagcgtgatcctgaccttg
acgaagcagtatgactttaacttgggtgctttcactgagagttctctctggagatcagtg
gactatgggagcacttatattaaactgaataataaggttgggtcaaccttggcttgcctc
tacgtctgcccaaccaacaagagaaagataatgatgcttagcgacccagagctggaacac
agtgtactcatcagctcagatgaaggtgccagcttcgagaagcatcccattaacttctac
atggatggtctgctgtttcatccaacacaggaaaactggctgctggctagcagtcctgac
aacaaggtgtacagcacaatggactttggaagaaaatggcagttggttagtgagaatgtg
actcctggacggttcttctgggcacaaacgggactggacagagaggcagatatggtccac
atggagacccacatcgccaaaggacgtgctcagtatgttacgtgccgagctcaacgatgc
acagaatcaaacagacagtacctgttcccgggacacatagaccaaaattctctggttgtt
caggacaactatgtgttcgttcaggttaccaagtcagggcaggcgagttattttgtgtcc
tatatgagggaatcattcaaacaaattcaactccccaaatactgtcttcccaaggacatg
cacatcatcagtacagataagaagcaggtgtttgcggctgtacaggagtggaaccagaat
gacacctacagcctgtatatctcagactctccaggggtctacttcactctgtctctagag
aacctccggaccagaagagagccaggcggaaatgtactggttgacatgtataaggtagaa
ggaataaacggcatattttttgccaacaaattggtggaccatgaagtgaagactttcatt
acctataacaagggtcagacctgggcccttctgcaagcccctaacactgatgtggctgga
aacagtctgcactgcatcctgccattttgttctctgcatctgcacctggatatgcctgtg
aacccttacctgcctggacgcatcttcagtaaggactcagcaccagggatcatcgtagcc
acaggcaacattggtacagagctgtcctccacgagccttggaatgtttataacatctgat
gctggcaatagctggagacagatatttgaagaagaacttggtgtttggtttcttgacaat
ggaggtgctttagttgcagtgtctttagttgcaacagtacccatccggcacatatggata
agtctggacgagggtaagacatgggatcgtcacagtttctctctggttcctttgtttctg
gatggagctcttatgcaaccagagaatcacatcatcactttcactggacacttaagtcgt
atttcagaatggcagctgataaagattgactacaaagccatctttagcaggagatgcatg
gatggagattatcagacttggaacctacataacaagggagagccatgtgtgatgggagaa
aagcagacctttatgaaacggaggccagggaaccgctgtatgctgacccaggactactcc
cgagtcatatcctcagaaccatgcatctgcagggcctatgattttgaatgtgattatggg
tatgaacgtcaagctgatggaaagtgttcacctgctttttggttcgacccaaatacggta
ccaagaagctgtagcactagccagaattacctcaatagcacagggtacaggaaggttttg
tctaataactgcaaagagggaggaaaggatgtgtactcccccaggaaacagcattgttcc
cccaggcctcccagaggcctcagactgaccactagccatggagacctcaccgccaacctg
ggcagtaacatcaccttcctggtgcatctggacgatggaaactcgttgtggacacatatc
cagctagactttggggatggcatcacggtcatgtacaacctgagccggagaggcgatggg
atcaaacacagctatagagcacctgggatcttcagagtgacagcacatgctgagaacagc
cagggatatgacagcagctccatgttcttacatatcaccagcccagtggagcgtgtgtat
ctctcagctcctgttgtggccatcaggaagaaggaagccaacctaactgctgtggtctgg
cccgtccaccaaagaacactaacctttttctggtggtttgaaaacagctctgagtcctta
ataaccttgggtggaagcatcgcgtacacgtttcagaaggagggcatgaacagggtcgtt
gtccaggtgtcttctgggtgcaacatactgcaggataccaaggtcatcattgttaaagag
ttcttcaaatccctgctgttatcattctctccgactttggacgagcacaaccctgacatc
cctgagtggagagaggatgtgggccgtgtggtgaggacagctgtgtcacaggtgtctggg
tttccagaagagcagctgttggtatcgttgtttccaggtgttccaacaacagcagaacta
tttatcctgcctgagactcatttgtctgaatatgggaaacggaatgaagagggcttagtg
agtatatcagacattcttataaatgccctgaaccaaggattgatccagtttgagttgaaa
cctgacactcaaataattgtttacatcacacagctaacttcggcacctctggttgattcc
aacccaattcacagtagctcagccatgctgatgtcgctatctgtggcgtttgttggttta
gttgcattcttcatcttcaagttcaaaaggaaaatcccttggatccatgtccaggctgag
gagaaccaggaaaaggagccggagaggatcggcacggttaggcagaacaacaccatgtcc
aagatgaagaacagtgagttcccctcagagaaggaacttacagagaaagaactggaggcc
aggaccagaggagaagatggaagaaatggggagagagtgatcacaagagagtttcctact
tgtactaatgtctaa
DBGET
integrated database retrieval system
