Oncorhynchus tshawytscha (Chinook salmon): 112254830
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Entry
112254830 CDS
T05605
Name
(RefSeq) protein polybromo-1 isoform X1
KO
K11757
protein polybromo-1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112254830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112254830
03036 Chromosome and associated proteins [BR:
otw03036
]
112254830
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112254830
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
112254830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
112254830
NCBI-ProteinID:
XP_024283490
LinkDB
All DBs
Position
LG07:complement(53226338..53241088)
Genome browser
AA seq
1629 aa
AA seq
DB search
MQMSSKRRRATSPSSSVSGGDFDDASSTPGSGRKRRRAFNVPTVDPIAVCHELYNTVRDH
KDDQGRQLCELFIRVPKRRNLPDYYEVVSQPIDMTKIQQKLKSEDYQDVEQLTADFQLML
NNAKNYYKAESEEYKAACRLWELYVHIRNEFVQPKDGDEEDDDDGEDMLDNPALSTEDET
PPSCLKEVLEQLLDAVVSYTDTSGRVISELFQKLPSKMHYPDYYAVIKEPIDLRAIAQRI
QIGYYKSVTAMAKDVDLLAKNAKTYNEPGSQVFKDANTIKKVFIQRKTEIDHAEPTKTSV
RIRNRRSAQGDRLSAITLALQYGSESDEDALLSGSVHYDEGESEAECLSFSMDMGNPVFQ
LYEAVRGGRNSQGQLLSEPFLQVPSRKEYPDYYQQVKQPIALQQIREKMKNGEYQSVEQM
DSDLTLMFENAKRYNVPNSAIFKRALRLQQILLMKKRELLRRGDEEDQDSILSSDTGTGS
ATKKKSHKKNVKKNRMKALYAAVTEAREAGTNRRLCDLFMVKPSKKDYADYYKVILEPMD
LKTMEHNIRSERYATEEALMDDMRLMFRNARHYNEEGSQVYDDADILEKIVKDKRKELGA
SPEEGTDNMGSPKLKLRKSGASPKKSNKYLTPLQQRLNELYDAVRNYTDGRGRRISTIFL
RLPSRAELPDYYSTIKRPIDMERLRSHMAGGRYQDVDALVEDFALMFNNACTYNEPESLI
YRDALLLHRVLLETRRLQEGVEEGGSPPAVGPLVRELIRNLFMSVLGHQDEEGRCYSDSL
AEIPAQDPASPEKPLLNFDVIRANVERGRYRRLDVFQEHMFEVLEKARRLHRTDSEIFED
AVELQQFFIKIRDELCKNGEILLSPALSYTSKHMHSDVEQEKREKLPKEMEEDKLKREEE
NKEEGEKAEDPAGGGAGPERMYSQDCSFENSTYHVGDCVYVQLAEANRKPHIVCIERLWE
DEAGEKWLYGCWFYRPGETFHLATRKFLQQEVFKSDYFNKVLVSKILGKCMVMFVKDYFK
LQPEGVRPEDVYVCESRYSARNKAFKKIKLWAVPAAVRFVPRDVPLPVVRVASMYAKRDQ
EKLLAVADNGSRSIVDKEREDVPVEMTGGEPGCPYYDQLHYNNMWLKVGDCVYIRSHELI
KPRIGRIEKLWVSDGAAFFFGPIFIHPEETEHEPTRMFYKREVFLSNLEETCPMTCVIGK
CVVSSFKDYLSCRPTEVSEEDVLLCESRYIESEKQMKKFKGLKRFSLHAKVVDDEIYYFR
KLIVPQKEPSPLLNKKIEELEMKLADMDEGDEDLDDLEDEDEAPETPSMPIMQTPLASDL
DIMPYTPPQSTPKVKGVSKKDGAKRKMNMSGYILFSSEMRSVIKTRHPDFSFGELSRLVG
TEWRNLEAPKKVEYEERAARVVEQQERERAAQQQASPRAGTPVGAMMGMTPGPGMMGAYG
PPYGMPMQGPYEGLLGMGPMPPHHMGSMPPQHFQPGMPGYHPGMPHPGMMGPGMNGMQGS
PGGHHYMQQPGMQAPPPYPGMGQLGQPSLLQPTTPMFVAPPPKTQRVLHSEAYLKYIEGL
NAENNTVSKWDQSLKARRRDVHMSKEQESRLPSHWLKSKGAHTTMADALWRLRDLMLRDS
LNIRQAYNL
NT seq
4890 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatgagttcgaaaagaagaagggccacctctccctccagtagtgtgagcggaggg
gactttgacgatgcatcctccactcctggaagcggacgaaaaagacgaagagcctttaat
gttcctacagtagaccctattgctgtgtgccatgagttgtacaacactgtcagggaccac
aaggatgaccaggggaggcagctttgtgagctgttcatcagggtaccaaagagaaggaac
ctgccagactactatgaggtggtgtcccagcccatagacatgaccaagatccagcagaag
ctcaagtcagaggattaccaagatgtggagcagctcactgctgatttccagcttatgtta
aacaatgccaagaactactataaggctgagagtgaagagtacaaggcagcctgcaggctg
tgggaactctacgttcacatcaggaatgagtttgtgcagccaaaggatggtgatgaagaa
gatgatgacgatggtgaagacatgctggataatcctgctctctccactgaagatgagact
ccaccgagctgcctgaaagaggttttggagcagctgttggatgctgtggtgtcatacacg
gacacatcaggacgggtcatcagtgagctctttcagaagctgccttccaaaatgcactac
ccagactactatgccgttatcaaggagcccattgatcttagagccatcgctcagagaata
caaattgggtactacaaaagtgtcaccgccatggccaaggatgttgaccttctggcgaaa
aatgcaaaaacatacaatgaaccaggatctcaggtttttaaggatgctaacaccatcaag
aaggtctttatccagagaaagactgagatcgaccatgctgagcccactaagaccagtgtc
cgcatcaggaaccggaggtcagcccaaggagaccgtctctctgccatcactctggctctg
cagtacggctcagagagtgacgaggacgccctgctctctggctctgtgcattatgacgag
ggtgagtctgaggcggagtgcctgagcttcagtatggacatgggtaacccagtgttccag
ctatatgaggctgtgagggggggcaggaacagccagggacagctcctctctgaacccttc
ctccaggtgccctccaggaaagaataccctgactactaccagcaggtcaaacagcccatc
gccctccagcagatcagggagaagatgaagaacggggagtaccagagcgtggagcagatg
gactctgacctcactctgatgtttgagaacgctaagcgctacaacgtgcccaactcggcc
atcttcaaacgggccctgcggctgcagcagatcctgctgatgaagaagagggagctgttg
aggagaggtgatgaagaggatcaggacagcattctgtcctctgacacaggaactggcagt
gctaccaagaagaaaagccataagaagaatgtgaagaagaaccgtatgaaggcactgtat
gctgcagtgactgaagccagagaagcagggaccaaccggaggctctgtgatctgttcatg
gtgaagccctccaagaaggattacgcagactactacaaggtgatcctggagcccatggat
cttaagaccatggagcataacatccgctcagagcgctacgccaccgaagaggcccttatg
gacgacatgaggctgatgttccgcaacgcacgccactataacgaggagggatctcaggtt
tatgatgatgctgacatcctggagaagatcgtgaaggacaagcggaaggagctaggagct
tctcctgaggagggcactgacaacatgggatctcctaagctcaaactaagaaagagtggc
gcgtctcctaagaagtccaataaatacctgaccccgctgcagcagcgcctcaatgagctg
tatgatgctgtgaggaactacacagatggcagggggcgacgtatctccaccatcttcttg
cgccttccgtcccgcgctgagctgcctgactactactccaccatcaagaggcccatcgac
atggagcgcctgcgcagccacatggcgggcggccgttatcaggacgtggatgcactggtg
gaagactttgccctgatgttcaacaacgcctgtacctacaacgagccagagagcctgatc
taccgcgacgctctgcttctccaccgcgtgctcctggagacccgcaggctgcaggaggga
gtggaggagggtggctcgccccctgctgtggggcctctagtcagggagctgatcaggaac
ctgtttatgtctgtgcttggacaccaagacgaggaggggaggtgttacagcgactcactg
gctgagatccctgcccaggacccggccagcccagagaagcctttgctcaactttgacgtg
atccgggccaacgtggagcgaggacgctaccgcaggctggacgtgttccaggagcacatg
tttgaggtgctggagaaggccaggcgcctgcacaggacagactctgagatctttgaggat
gcggtggagctgcagcagttctttataaagatcagagatgagctgtgtaagaacggtgag
atcctcctctccccggctctcagctacacctctaaacacatgcacagtgacgtagagcag
gagaagagagagaaactacccaaggagatggaggaggacaaactgaagagggaggaggag
aataaagaggagggagagaaggctgaggacccagctgggggaggtgcggggccagagagg
atgtacagtcaggactgcagctttgagaacagcacctaccacgtgggagactgtgtctac
gtgcagctggccgaggccaaccgcaagcctcacatcgtctgcatcgagcgcctgtgggag
gacgaagcaggtgagaagtggctgtatggctgttggttctacaggcccggtgagaccttc
catctggcaacacgcaagttcctccagcaagaggtcttcaagagtgactacttcaacaaa
gtactagtcagcaagatactgggcaaatgcatggtcatgtttgtcaaggattacttcaag
ctgcagcctgagggagtcagaccagaggacgtgtacgtctgtgagtcccgttattctgcc
aggaacaaggcctttaaaaagatcaagctgtgggccgtgccagccgccgtgaggtttgtc
cctcgggacgtgcctttgcccgttgtccgggtggcctccatgtatgccaaacgtgatcag
gagaaactgttggccgtggctgataacggcagccgcagcatcgtcgacaaggagcgtgag
gatgtgccagtggagatgactggaggggagccaggctgtccgtactatgaccagcttcac
tacaacaacatgtggctgaaggtgggagactgtgtctacatccggtcacatgagctcatt
aaaccacgcatcggcaggatagagaagctgtgggtgagtgacggagcagcgttcttcttc
gggcccatcttcatccacccagaggagactgaacacgagcccaccaggatgttttacaag
agagaggtgtttctcagcaacctggaggagacatgtcccatgacctgcgtcatcggtaaa
tgtgtggtgtcgtcctttaaggactacctgtcgtgtcggcccactgaggtgtctgaggag
gacgtgttgctgtgtgagagccgctacatcgagagtgagaagcaaatgaagaagtttaaa
ggcctgaagcgcttctccctccacgctaaggtggtggacgacgagatctactacttcagg
aagttgatagtgccccagaaggagccgtctcctctgctgaataagaagattgaagagttg
gagatgaagctggcagacatggatgagggggatgaggatctggatgacctggaggatgag
gacgaggctccagagactccctccatgcccatcatgcagacccctctggcaagcgatttg
gacatcatgccttacacccctcctcagtccacgcccaaggtaaagggtgtgtctaagaag
gatggggccaagaggaaaatgaacatgagcggctacatcctgttcagcagtgagatgcgt
tcagtcatcaagacccgccaccctgatttctcctttggggagctcagccgtctggtggga
accgagtggaggaacctggaggctcccaagaaagtagagtatgaagagcgggcagccagg
gtggtggagcagcaggagagggagagggcagcccagcaacaagcttcccctagagcaggt
accccagtaggggccatgatgggaatgacgcctggtccaggcatgatgggagcttatggc
cccccctacggtatgcccatgcagggcccctatgagggcttgctgggtatgggcccaatg
ccacctcaccatatgggctcgatgcccccccaacacttccagccaggtatgcctgggtac
caccctggtatgccccacccaggtatgatgggtcctggtatgaatggcatgcaaggaagt
cccggaggccaccactacatgcaacagcctgggatgcaggcccctccaccatacccaggc
atgggccagctagggcaaccctccctcctccagcccacgacccccatgtttgtggctcca
ccacccaagacccagagggtgctccactctgaggcctacctcaagtacattgagggcctg
aacgcagagaacaacactgtcagcaagtgggaccaatctctcaaagcacgtaggagagat
gtccacatgtccaaagagcaggagagcagactcccttcccattggttgaagagcaaggga
gcccacacgacgatggcagacgcactgtggcgcctgcgggacctgatgcttcgagactca
ctgaacatacgtcaggcgtacaacttgtag
DBGET
integrated database retrieval system
