Oncorhynchus tshawytscha (Chinook salmon): 112255021
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Entry
112255021 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RNF115-like
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112255021
04121 Ubiquitin system [BR:
otw04121
]
112255021
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112255021
Membrane trafficking [BR:
otw04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
112255021
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112255021
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-C3HC4_2
zf-RING_UBOX
zf-rbx1
zf-C3HC4
zinc_ribbon_9
zf-Nse
zf-RING_5
zf-C3HC4_3
zf-ANAPC11
zf-RING_16
C1_2
HypA
Motif
Other DBs
NCBI-GeneID:
112255021
NCBI-ProteinID:
XP_042163724
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Position
LG03:complement(3880100..3888373)
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AA seq
323 aa
AA seq
DB search
MAEAAAVPPHRFFCHCCKGEVSPKLPEYICPRCESGFIEEVTEDSSLLEGGTNGTDDTAT
QFAELWHLLFVERPFTVDGDSPDSEPRVPGGGAGVGSGVRSGGLGGLGGLGGGPIGGSVP
AGLGGPLGGPLGGGEHWGPGRPPRLHSQRRYRSRGSSRPDRSPAVEGIVQQFLAGLFANS
GVPGSPPLSWTGMLHSNPGDYAWGQGGLDAVITQLLGQFENTGPPPAEKEKISSIPTVNV
SQDQADCSMECPVCKEDFAVGEPVRQLPCNHFFHSDCIVPWLEMHDTCPVCRKGLNGEDS
NTQNPPESPSLNTDPXTQERWSF
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagctgcggcggttcccccgcatcggttcttctgtcattgttgtaagggagaa
gtaagccccaagctcccggagtacatctgtcccaggtgtgagtctggctttatagaagag
gtaacagaagattccagtctgctagagggtggcactaacgggacagatgacacagccaca
cagtttgcagagctgtggcacctgttgtttgtagagaggcctttcacagtggatggtgac
agtccagactcagagccccgggtccctggtggaggggctggggtaggatcgggggttagg
tctggggggctaggagggctaggaggcctgggaggaggtcctatcggagggtcagtccct
gctggcctaggaggacccctggggggtcctctgggagggggggaacactgggggcccggt
cgcccccctcgcctgcacagtcagcggaggtaccgctccagagggagcagcagacctgac
cgctcacctgccgtagaggggatagtacaacagtttctggctggtctatttgccaactct
ggagttcctggctcacctcccctctcttggacggggatgctacactctaacccaggggac
tatgcttggggacaggggggactggatgcagtcatcacacagttgttaggtcagtttgag
aacacgggccctcctcctgcagagaaagagaagatctcctccatacctacagtcaacgtg
tctcaggatcaagcagactgcagtatggagtgtccggtgtgcaaggaggactttgcagtg
ggagagcccgtcagacagctaccctgcaaccacttcttccactcagactgtatagtaccc
tggctggaaatgcatgatacgtgtcctgtgtgtaggaaggggttgaatggagaagacagc
aacacccagaaccccccagaatccccctctctaaacacggaccccngcacacaggagaga
tggtccttctga
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integrated database retrieval system
