Oncorhynchus tshawytscha (Chinook salmon): 112255093
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Entry
112255093 CDS
T05605
Symbol
pde12
Name
(RefSeq) 2',5'-phosphodiesterase 12
KO
K19612
2',5'-phosphodiesterase [EC:
3.1.13.4
3.1.4.-]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112255093 (pde12)
03029 Mitochondrial biogenesis [BR:
otw03029
]
112255093 (pde12)
Enzymes [BR:
otw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
112255093 (pde12)
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
112255093 (pde12)
Mitochondrial biogenesis [BR:
otw03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
Other mitochondrial DNA transcription and translation factors
112255093 (pde12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDE12-like_N
Exo_endo_phos
Motif
Other DBs
NCBI-GeneID:
112255093
NCBI-ProteinID:
XP_024283922
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All DBs
Position
LG07:complement(73817027..73820377)
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AA seq
586 aa
AA seq
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MLNYLTTASRLFLRNTVPISSRGNYNIICRFYRRMDRAVVRCVPWESKLTISFVLDGSNK
HMLRDQTEELGKALARIANSIIKGQGKAKKYKKNKGAPTDAQEPAAAVRLYYDGDFVAED
ALNSDAWQDGAVLHVGDRKYTVERNPPTFTTAELPASLLAGFPVCPKLKVEFGDLKDCRF
KWFKESKSGAGDEEHRGENSWTEAGSERVFIPSNMDIGSKLKLTCTPGDGKRCGMDNELV
TTGTVEAGPGSCTFDNRHMYTNKVTDGMTVRVVSYNILADVYAQTDLSKTVLYPYCTPYA
LELDYRQSLIKKELSGYNADVICLQEVDKSVFADSLSPALDAFGFEGVFRIKEKQHEGLA
TYYRRSKFKLLSQHDIMLSEALTSDPIHKELSDRVNSNPALKEKVMQRSTTLQVSVLHCL
NDPSKKICVANTHLYWHPKGGNVRLVQMAVALKQLQQVITQSYPDASLLFCGDFNSTPSS
GVFQLVSQGVLHSTHPDWSSNGPDELCPMEVSNPFQLSSACGEPAYTNYVGGFHGCLDYI
FMDPRVLQVDQMIPLPSHQEVTTCQALPSVSHPSDHIALVCDLKWK
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgttaaactatttgacaaccgcctccagattatttctccgaaacaccgtgcccatctcg
tcgaggggtaactacaacataatttgtcggttttacaggagaatggatcgagccgtggta
agatgtgtcccgtgggaatccaaactcactatttccttcgtccttgatgggagcaacaaa
cacatgctcagggaccagaccgaggagctaggcaaagcactggcacggatcgctaacagt
atcatcaagggccagggcaaagctaaaaaatacaagaaaaacaaaggcgcgcccacagac
gcccaggagccggctgcagcggtgaggctgtactacgacggagactttgtggcagaggat
gctctaaactccgatgcctggcaggatggggcagtcttacacgtgggtgaccgtaagtac
acagtggagaggaaccctcccacattcaccacggcagagctgcccgcttctctactggcc
gggttccccgtgtgcccgaagctcaaggtagaattcggggatttaaaagactgtcggttt
aaatggttcaaggagagcaagtccggtgcaggtgatgaggagcatcgaggagagaatagt
tggaccgaagccgggagcgaacgagtgttcatcccgtcaaatatggacattggctccaag
cttaaactgacgtgcacgccgggtgacggcaaacggtgtgggatggacaatgagttagta
accaccggtacagtcgaggcagggcccggttcctgtacctttgacaacagacacatgtac
accaacaaggtcacagatggcatgaccgtcagagtagtgtcatacaacatcttagctgac
gtttacgcacaaacagacctctccaaaaccgtcctttacccttattgtactccctatgca
ttggaactggactacagacaaagtctgataaaaaaagagctgtccggctataatgctgac
gtcatctgccttcaggaagtggataagagcgtgttcgccgacagtctgtctccggccctg
gatgcgtttggcttcgagggggtcttcaggattaaggagaagcagcacgaaggtttggcc
acctactacaggaggtcaaagtttaaactgctcagtcaacacgacatcatgctgagtgaa
gctctgacgtcagaccctatccacaaagaactgtcggacagagtgaacagcaaccctgcc
ttgaaggagaaggtgatgcagagatctaccacactacaggtgagtgtccttcactgtctg
aacgatccatccaagaagatctgtgttgccaacacccacctctactggcatcccaaaggt
gggaatgtacgtctggtccagatggcagtagctctgaaacagctgcagcaggtgatcacc
cagagttaccccgacgcttcgctcctcttctgcggcgacttcaacagcaccccgtcctcg
ggggtcttccagctggtgagccagggggttctgcacagcacccacccggactggagctcc
aacggaccggacgagctctgtcccatggaggtctccaaccccttccagctgagtagcgcc
tgcggggagccggcctatactaactacgtagggggcttccacggctgcctggactatatc
ttcatggacccgcgggtgctgcaggtagatcagatgatccctctgcccagccaccaggag
gtcactacctgtcaggccctccccagtgtctcacacccctctgaccacatagcgctggtc
tgtgacctcaagtggaagtaa
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