Oncorhynchus tshawytscha (Chinook salmon): 112255099
Help
Entry
112255099 CDS
T05605
Symbol
nisch
Name
(RefSeq) nischarin isoform X1
KO
K24095
nischarin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
otw04990
]
112255099 (nisch)
Domain-containing proteins not elsewhere classified [BR:
otw04990
]
Phox homology (PX) domain-containing proteins
Other PX domain-containing proteins
112255099 (nisch)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_4
PX
LRR_8
LRR_9
LRR_NXF1-5
LRR_6
Motif
Other DBs
NCBI-GeneID:
112255099
NCBI-ProteinID:
XP_042180861
LinkDB
All DBs
Position
LG07:73238988..73279295
Genome browser
AA seq
1500 aa
AA seq
DB search
MDTAVFPEDVVVKKVSIVGSELVENYTVYVIEVKVRDHRWTIKHRYSDFHDLHEKLTAEK
KIEKHLLPPKKMIGKNSKSLVEKRQKELEVYLQTLLVRFPTAAPKVLSYFLHFHQYEING
ITAALAEELFHKGEQLLVAGEVFTLCPLQLYAITQQLKLAKPTCSNGDAKADLGHILDFT
CRLKYLKITGTRGEVGTSNIQEDSLTFDLSVFKALLQIEISDCNSAQIMGLPSLKPCLVT
LNVHHSAASMMDVLVPEACVSPQWVAEGALTDRPVATIIPTWKTLTTLDMSHNHIGCIDN
SVKLIPKVEFLDLSSNELSMVENLQHLYNLIHLDLSYNILTVLEGAHTKLGNIKTLNLAG
NQLDSLAGLTKLYSLVNLDLSSNKLGQLEEIRYIGMLPCLERLVLSNNPMCIIPDYRTKV
LAQFWDRASEVCLDSTAPTEKELDTVEVLKAIQKAKESKDRMANNNEKKISEDSRLSGGG
SSISSSVAAASSSSSSLLSSALAPACSSQELICKEEGFVTPTILTPVDFIALDTQRCYDV
NTLPCEEQLQVTSHQPDDSRSFERSSTQQNQNSSCCCCVEDREERYTWSNTNLRTPVLPL
HLPSTSSCPSFTSLLSARITRALGEENRRPSRLRDLPSQEETDLGSPSPSPSSGDGYFEM
GLGEGKEREGEEGSLTDPVEGENQALETEVLRVTKVMWCHCIRVDDVVEQRSVCVVLTNS
LLGLFHCPRHPSTAPTHQPQSQPHDLGSVTVQTQGLTLQTLVDNLEPDLVLPYDQLDSLL
FYIPDTCLSLRVRSSDVHWYLFSDPEGLKETHSLLCSLAQLPSSPLGGLSTPQQLLHLLF
TSWEMEENQSCVKGGYAAHLVETAMLSSQTSQRTTSSTNPTLTPTKTSTNPDTFTLQTLT
NPLLSDILSHVVPGGDRASSCCVPCVLFLTQRHLCVLKVDFKALARGTTGDEPSDDHNQR
LRSCSRLSRIPLASVLPHPRQSALYGAGAGSIPAYSPSCPLHHRSPRDSRVMELLVGQER
VTAVFPFPHDRLRFQKQFTLLRSSLRDIKTVAFLQGGNEHSHSPRTINIHTPNETKSTDR
LQVNSPRGAQRPRPSLSLSYPTDILVEKLTGDNQVPSHLSLSPALSLVSGLRGHQLLGFF
HTNIAEEEKEELHHILWSSVVFYKSPDVEATSCIMLSTKALYFLLDDSASTLNDQSLLWD
WSHCDHRDPELVMSYCFTIDLHDLHSVNVGLFDQYFRVVGPSADHIICCLTRDSYGTHRF
LQQLMTVLSLQDKLPSPEPSEQDFYTQFGNKSTGKMGNYELVHSSRVKFIYPSEEEIGDL
TFIVAERKGPSGASSCNILLYVLVFQVQTQGLGFSQTQGLGFSQTQGLGFSQTQGLGFSQ
TQGLGFSQTQGLGFSQTQGLGFSQTQGLGFSQTQGLGFSQTQGLGFSQAPAADRQTSTGG
LQGDRKSHLHPQSPVSASQPRLHPYPQAPGPAPPPGPISPNRACLPRLPPPPGLSSILRL
NT seq
4503 nt
NT seq
+upstream
nt +downstream
nt
atggatactgccgtatttcccgaggatgtcgttgtaaaaaaggtttccatcgttggatcg
gagctcgtagagaattacactgtgtatgtcattgaggtgaaagtaagggatcacagatgg
accataaagcatcgctacagtgatttccatgacttgcatgagaaactgacagctgagaag
aagatagagaaacatttactgccgcctaagaagatgattggtaaaaactccaaaagcctg
gtagagaaacgtcagaaggaactggaagtctacctacaaacactgctggtcagattccct
acagctgcccctaaagtcctctcctactttctgcacttccaccaatatgaaattaatgga
atcacagccgctctggcagaggagctgttccacaagggagagcagttgctggtggctggt
gaggtgttcacattgtgtcccctccagctgtatgccatcactcagcagctgaagctggcc
aagcctacctgctctaatggtgacgccaaggcagacctgggacacatcctggacttcacc
tgcagactcaaatacctcaagatcacaggcaccagaggagaggtggggaccagtaacatc
caggaagacagcctcacgtttgacctttcagtctttaaagctctcctacagatagagata
agtgactgtaactcggcccagatcatgggactgccttctctgaaaccctgtctggtcacg
ctgaatgtccaccactctgcagcatccatgatggatgtgctggttccggaggcatgcgtg
tcccctcagtgggtcgcagagggagcgcttacagaccggcccgttgccaccatcatccct
acctggaagactctcaccaccctggacatgagccacaaccacataggctgcatagacaac
tcagtgaaattgataccaaaagtcgaattcttagatcttagttccaacgagctctctatg
gtggaaaaccttcagcacctgtacaatctgatccacctggacctttcttacaacattctg
acagtgttagaaggggcccacaccaaactgggtaacatcaagaccctcaacctggcaggc
aaccagctcgacagcctcgcaggcctcactaaactatactctctggttaacctggacctc
agctccaacaaactgggacagcttgaggagatcaggtacataggaatgctgccctgcctg
gagaggctggtcctgtctaacaaccccatgtgtatcatccctgactacagaaccaaggtg
ctggctcagttctgggaccgcgcctcagaggtatgcttggacagcactgcgccgacagag
aaagagctggacactgtggaggtgttgaaagctattcagaaagccaaagaatctaaagac
cgaatggccaacaacaacgaaaagaagatcagtgaggactccaggctgtctggtggtgga
tcttccatctcctcctctgtcgctgccgcctcttcctcctcttcctctctcctctcctca
gccctagccccagcctgctccagccaagaattgatatgtaaagaagaaggctttgttacc
cctacaatattgactcctgtggattttattgcacttgatacccagcgatgctatgatgta
aacacactgccttgtgaggaacaactacaggttaccagccaccaacctgatgattctaga
tcttttgaacgctccagtacccaacagaaccagaacagtagctgctgctgctgtgtggag
gacagagaggagcgatacacatggagcaacactaacctgaggacccctgtgctccccctc
cacctcccctccacctcctcctgtccgtccttcacctccctgctgtctgcccgcatcacc
agagccctgggagaggagaacaggaggcccagcagactccgagatctccccagccaggaa
gagactgatctgggcagccccagtccaagcccctcctctggagatggatactttgagatg
ggtctgggggagggaaaggagagggagggagaggaggggtccctgactgacccggtagag
ggagagaaccaggccctagagacagaggtgttacgtgtgaccaaagtcatgtggtgccac
tgcatcagggttgatgatgtggtggagcagaggtcggtgtgtgtggtgctaacaaacagt
ctactggggctgttccactgtcctcgtcacccctccacagccccaacccatcaaccccag
agccagcctcacgaccttggctcagtcacagtccagacccagggcctaaccctacaaact
ctagtagataacctggagccagacctcgtccttccctacgaccagctagactctctcctc
ttctacatcccagacacttgcctttccctgagggtgaggtcctctgatgtccactggtac
ctcttctcagaccccgagggtttaaaagagacccactccctgctctgctccctggcccag
ctcccctcctccccgttaggaggactctccaccccacagcagctcctccacctgctcttc
acctcctgggagatggaagagaaccagagctgtgtgaaaggaggttatgcagcacatcta
gtggagactgccatgttgtcgtcccagaccagccagcggacaacctcctcaacaaaccca
actctcactccaacgaagacctctactaacccagataccttcaccctccaaactctaacc
aatccccttctctctgacatcctatcccacgtagttccaggaggggacagagcctcctcc
tgctgtgtcccctgtgtcctgttcttgacccagcgccatctctgtgtgctgaaggtggac
ttcaaagctctggcccggggaaccaccggagatgaaccgtcagacgaccacaaccagagg
ctccgctcctgctccaggctcagccgcatccccctggcctccgtgctgccccacccaagg
cagagtgccctgtatggggctggtgctgggtctatccctgcctactctcccagctgcccc
ttgcaccaccgctcccccagagacagccgtgtcatggagctcctagtgggacaggagagg
gtcacagcggtgttcccgtttcctcacgacaggctccgtttccagaaacagttcaccctg
ctgcgctccagcctcagggacatcaagactgtggctttcctgcagggggggaacgaacat
agccacagtcccaggacgataaacatacacactcccaatgagaccaagagcacagacaga
ctgcaggttaacagccctcgaggtgctcagcgtcctcggccatccctgtccctgtcctac
ccaacagacatcctggtggagaagctgaccggagacaatcaggtcccatcccacctgtcc
ctgtccccagccctgtccctcgtctctgggcttaggggacaccagctgctggggttcttc
cacacaaacattgcagaggaagagaaggaagagctgcatcacatcctgtggtcatctgtg
gttttttataagtcacctgatgtcgaggccacttcctgtatcatgctctctactaaagcc
ctctacttcctgctggatgactccgcctccacgctcaatgaccaatcactactgtgggac
tggagccactgtgaccatcgggacccagagctggtcatgtcttactgtttcaccatcgac
ctccacgacctccactctgtcaacgtgggcctgttcgaccagtacttcagggtggtggga
ccgtcagcggaccacatcatctgctgtctgacgagggacagttacgggacacaccgcttc
ctgcagcagctgatgacggtcctctctctacaggacaaactaccctctcctgaaccctcc
gaacaagacttctacacacagtttggaaataaatctacaggtaagatggggaactatgaa
ctggtccactctagcagggtaaagttcatctaccccagcgaagaagagattggagacctg
acctttatcgtagccgagaggaaaggtccctctggggcatccagctgtaatatcctgctc
tacgtcctggtcttccaggtgcagacccaggggctaggtttctcccagacccaggggcta
ggtttctcccagacccaggggctaggtttctcccagacccaggggctaggtttctcccag
acccaggggctaggtttctcccagacccaggggctaggtttctcccagacccaggggcta
ggtttctcccagacccaggggctaggtttctcccagacccaggggctaggcttctcccag
acccaggggctaggtttctcccaggccccagctgcagacagacagacttccactgggggt
ctgcagggggatagaaagtctcacctccacccccagagcccggtctctgctagccaaccc
cgtcttcacccctacccccaggctccaggcccagcccctccaccaggccccatatccccc
aacagagcctgcctccccaggctccctccacccccaggcctgtcctccatcctaagactc
tga
DBGET
integrated database retrieval system
