Oncorhynchus tshawytscha (Chinook salmon): 112255156
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Entry
112255156 CDS
T05605
Name
(RefSeq) trichohyalin isoform X1
KO
K20684
Rho guanine nucleotide exchange factor 5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112255156
Membrane trafficking [BR:
otw04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
112255156
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RhoGEF
SH3_1
SH3_2
SH3_9
PH
Motif
Other DBs
NCBI-GeneID:
112255156
NCBI-ProteinID:
XP_042160943
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Position
LG23:25107269..25123430
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AA seq
1962 aa
AA seq
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MGTKRPSLTPFDTSDPSNQSASYLNPQPISQICRETSPRPGTVARTDRERERIREEEWRR
EREMERFKDKTRNRRKEMEPGPRERNREDCSPISRGREEEREWRERERGGAVERRANGRP
TSNLEIRNHRDREKERKKGDTFPTIIKHSKERDRRIRAFVEEDVGKEGMRQLERPKGTEM
DDWERERETAAKIQRYRDAERDFQRHRERERDFQRHRERERERIRAQEDGEKNGGRPMED
KTVRRRERAREAEPDFRERRRERDSKGNGLWSKRERYMDGERERPKLWQGERDVRGREGD
SQNYSDREGRDGRREGNTEGQRDTRSEGDSDGEKRKERVRDDNRRELKHLHSKSEGDTEG
NAAWDRVREKERQKWRGGEMYRERDGSKDGYRQRVRDGGRGRDRDIDGERDMDRREVERE
RDGVREGGRQENGPRERRDLEKDREKTQPNVTGERGKRMDGERFRERERYSKEEDEERRC
REKRDRETDPKREGEAGGASRSPSETASRVPPRVQSSGEWSSDIESERKWRRGRESHEEM
ESEGDVDRGQRERSERVRGREEGKEETIPKRHEQRKMWLEPQKVRYNKDSSLEDEVIERE
RDRHTNRCRQRSEEEDRFMEQRTGRDKERKTEGEGQEDRSVEQRKFIDEEREAEREGGRE
RYLERGLNVDEDDETEAWRSYSRGEEHQTYSDGEREERWQRDRETERENVTDNTEGDREE
EGRSDRYAEWEGERDRIPSSEDGFITVSSGGEEEFEDCKEFVEVGFTNHVTRQPVSFQGS
EGEMKRGGGRRHDRARERAEERTEQKDDALEGEVNDGNGKKQPTYVFCVIGQTLPRSKPN
QTAVLGDMESERTNQNPGYGHRDSGDITHLPHENPSRDGDQGAKEEREIVRDEIHVPKEE
RTDTEESSIVDVSHTTLERESGERLKVMEENPYAEIERRRNSETEKLLKEWRERHEEYTE
TRERDPTDRRRIEPEIGPSSHPSGEYHHHGIPVVDQATSDQNNPVVMSPEEAVAIQICIR
GAWSTEEETKRHSQASHMKWAKNVLSEILGSSEEPALGNPQPESQGSQEVSQTARGTERV
EEELEEEKDETLEGGGASPVYATVQKRKKRGRKSVEERLAEQEAEPGKVEDERGTGEKLT
DVHAEAFTAMLGDGKPIDMHAALTLHNTHGDTPTDTQGEEVEGNNVCADRQTDSHIHIQV
EMVTEVEGEMEKGVEVGDEVHILDAEKEVNAQKEEDLFLSVSNTLYKPTSCPSLIYNPDS
EQPITTIEEKAEEEGEKERTVGDGEENSVVERKQERRIEDGTEDRGKVGEERKVEREEEK
RVGGEEERMREGKENSKKTGGGGMKSTCSFQDLGTDVRYRRRGFHKTTERRNEEEEEGRG
DARDRRTRIFQESDEGEVSVNWGDVDLRNVTDTIRMDRRNSKFYNSQLYQQYSETAQNRE
ILSQSCSDTLSIYEELPVPLSPVPSSLAPSLPPARRPLPCLPPVIHPHSLSHSGSTSSGT
SAKFLPIPQPPQAPSARPSSPRLSISLTQSPSLWQEIPEVRNSAEFGELTNDQRRLQEVQ
FEVVTSEASYCRSLDIVVDHFVKSKQLGELLTTQDRSWLFSRLADVRAISHSFLSKLEER
VESDMMHFTVCDIIARHCQRFKKVYVPYLTNQSYQDATYQRLMDENQGFRRVVEKLERSP
VCQRLPLRSFLILPFQRITRIKLLVQNIVKRTAQGTEEEVQAIKAMKLLERLIQESNDSI
TQMKSIESLVSLSARVDFECRTLPLVSQSRRLVREGPVTEMMDFSVKETERSVYLHLFND
YLLLSLHKEGGRFTVIDHAPVSELRAENCRVKLHSLEKNLFRLHLNKKALLLSTDTQGDK
LRWISAVSRPHPVIDYSTAQDFTQMQCVRAFVAHQPDELSLEKAEVILVHQKSSDGWVEG
TRLSDRHRGWTPESHLETIASLRVRQRNLLDALKITTATAAV
NT seq
5889 nt
NT seq
+upstream
nt +downstream
nt
atgggcaccaaacgccccagtctgactccctttgacacatctgatccatccaatcaaagc
gcttcctacttgaaccctcagccaatcagccagatctgccgtgaaacaagtcccagacct
ggaactgtggcccggacagacagagagagggagaggatccgagaggaggaatggaggaga
gaaagagaaatggagagatttaaggacaagacaagaaatagaagaaaagagatggaaccc
ggaccaagagagaggaacagagaggactgttcccccatatccagagggagggaggaggaa
agggaatggagagagagagaaagggggggagcggtagagagacgtgccaatggaagacct
acttcaaatctggagatcaggaaccacagagacagagaaaaggagagaaagaaaggagac
acgtttcctacaattataaaacatagcaaagagagagacagaagaatacgtgcatttgtg
gaggaagatgtggggaaagaaggaatgagacaattggagagaccgaagggaacagagatg
gacgactgggagagagaacgagagacagcagcaaagatacagcggtatcgagatgcagag
agggacttccaaaggcacagggagagggagagggacttccaaaggcacagggagagggag
agggagagaatcagggcacaggaggacggagagaaaaatggagggaggcccatggaggat
aagacagtgagacggagggagagagcgagggaagcggagccagatttcagagagaggaga
agagagagggactcaaagggcaatggcctatggagcaaaagagagaggtatatggatgga
gagcgagagaggccaaaactctggcagggagaaagggacgttcgaggaagagagggagat
tcacagaactattcggatagagagggcagggatggaaggagggaaggaaatacagaggga
cagagggacaccaggagtgagggagacagtgatggagagaagaggaaagagagagtgaga
gatgacaacagaagagaactgaaacatctgcacagtaaaagtgagggggacactgagggg
aacgcagcatgggatagagtgagggagaaagagagacagaaatggagagggggggagatg
tacagagagagggatggaagtaaagatggttatagacagagagtgagggacggtggcagg
ggcagggacagggacattgatggagagagggacatggacaggagggaagtggagagagag
agggatggggtgagagaagggggcaggcaagagaacggaccaagggaaaggagggatctg
gagaaagatagggagaaaacacagcccaatgtaacaggagagagagggaagcggatggat
ggagagcgattcagagagagggagagatattccaaggaggaggatgaagagaggaggtgc
agggagaagagggacagagagacagatcccaaaagggagggagaagcaggtggagctagc
cgatcgccgagtgagacagcctcaagggtgccaccacgagtccagagcagtggagaatgg
agcagtgacatagagagtgaaagaaaatggagaagaggaagagaaagtcatgaagagatg
gagtcagagggagatgtggacagggggcagagagagcgcagtgaaagagtgagggggaga
gaagaaggaaaggaagagacgataccaaagcgccatgagcagaggaagatgtggttagaa
ccacagaaggtcagatataacaaagactcctctttagaggatgaggttatagagcgagaa
agagataggcacactaacagatgtagacagagaagtgaagaagaggacagattcatggaa
caaaggacaggcagagataaagagaggaagacagagggagaaggacaagaggataggtcg
gtggaacaaagaaagttcatagacgaagagagagaagctgagagggagggagggagggag
aggtatttggagagagggttaaatgtagatgaagatgatgagacagaagcctggaggagt
tatagcagaggcgaggaacaccagacttacagcgatggagagagagaggaacgctggcag
agggacagggagacggagagagagaatgtgacagataacacagagggtgacagagaggaa
gaaggaagaagtgatagatatgcagagtgggaaggagagagggatagaatcccttcctct
gaggacggctttatcactgtgtccagtggtggagaagaggagtttgaggactgcaaggaa
tttgtggaagttgggttcactaatcatgttaccaggcaacctgttagctttcaggggagc
gagggagagatgaagagaggtggtgggagaagacatgatagagcgagagaaagagcagaa
gagcggacagagcaaaaagatgatgcattggagggagaggtgaatgatggaaatgggaag
aagcaacccacctatgtattctgtgtgattggacaaacactgcccaggtcaaaaccaaat
cagacagcagtcctgggtgacatggaatcagagcggaccaatcaaaatcctggatatggt
catagggacagtggtgacatcacacacctccctcatgagaacccttccagagatggagac
caaggggcaaaggaggagagagaaatagtgagggatgagatccatgtgccaaaggaggag
agaacagacacagaagagagctccatagtggacgtcagtcacaccaccctagaacgagag
agcggagaacgactgaaggtcatggaggagaacccatacgctgagatagagcgaaggagg
aactctgagaccgaaaaactcctcaaagagtggagagaaagacatgaagagtacacagaa
acaagagagagggacccaacagacaggaggaggatagaaccagagataggtccatcttcg
catcccagtggagagtaccaccaccatgggatccctgtagttgaccaagccacctctgac
cagaataaccctgtagtgatgagcccagaggaagctgtggccatccaaatctgtataagg
ggagcctggagcacagaagaggagacaaagcgccactcccaggcctcacacatgaagtgg
gccaagaacgtattgagcgagatccttggcagctcggaggaaccagccctcggcaacccc
cagccagagtcacagggaagtcaagaggtcagccagactgcgagagggaccgagagggta
gaagaggagctagaggaagaaaaggatgagacgctagaggggggaggagcctcacccgtc
tacgccacggttcagaagaggaagaagcgtgggaggaagtcggtagaggagaggctggct
gaacaggaggcagagccagggaaggtggaggatgagagaggtacaggggagaaactaaca
gacgtgcatgctgaggctttcacagctatgcttggtgatggcaaacccatagacatgcat
gctgccctgaccctacacaatactcatggtgacacacctacagacacacagggagaggag
gtggagggtaacaatgtgtgtgcggacagacaaacagacagtcatatacatatccaggta
gagatggtgacagaggttgagggtgagatggagaaaggggtcgaagttggggacgaggtt
catatactggatgcagagaaagaagtgaatgcccagaaagaggaagatctgtttctctct
gtgagcaacaccctgtacaaaccaaccagctgccccagccttatatacaaccctgattca
gaacaacctatcaccaccatagaggaaaaggcagaggaagaaggggagaaagagaggact
gtgggagatggggaagagaatagtgtggtagagaggaagcaggaaaggaggatagaggat
gggaccgaggacagggggaaagtgggagaggagaggaaagtggaaagggaggaggagaag
agggtaggaggggaagaggagaggatgagggagggcaaggaaaatagtaaaaaaacggga
ggaggggggatgaagagcacttgtagcttccaagatttgggcaccgatgttcgatatagg
aggcgggggttccacaagacaacagaaagaagaaacgaggaagaagaagaaggaagagga
gatgcaagggatcgcagaacaagaatattccaggagtcagatgagggggaggtgagcgtc
aactggggagacgtggacctgaggaatgtcacggataccatcagaatggataggaggaac
tccaaattctacaattcccagctctaccagcagtacagtgagacagctcagaacagggag
atcctcagtcagtcttgctctgacaccctctccatctacgaggagctccctgtccccctg
tcccccgtaccctcctctctggccccctcgctccctccggcacgcaggcccttaccctgt
ctccccccagtcatccacccccactctctgtcccactctggatctacctccagtggcacc
agtgccaagttcctacccataccacagccgccccaggccccctcggccaggccttcctct
ccccgcctctctatctccctcacccagtcccccagcctgtggcaggagatccctgaggtc
aggaacagtgctgagtttggggagctgactaacgaccagagacgcctgcaggaggtgcag
tttgaggttgtaacttcagaagcgtcgtactgtcgtagtctggatattgtggtggatcac
tttgtcaagtctaagcagctcggggagctgttgactactcaggacaggagctggctgttc
tccaggctggctgatgtccgagccatcagccacagttttctgtcgaagctggaagagagg
gtagaatctgatatgatgcacttcaccgtgtgtgacatcatcgctcgccactgtcaacgc
ttcaagaaggtctacgtgccctacctcaccaaccaatcatatcaggatgccacttaccag
agactcatggatgagaaccaagggttcaggcgggtagtggagaagttggaacgcagtcca
gtgtgtcagcgtcttcctcttcgctccttcctcattctccccttccagaggatcacacga
atcaaactccttgtgcagaacattgtgaagagaacagcccaaggcacagaggaggaggtc
caggccatcaaagctatgaagctactggagaggttgatccaggagagcaatgacagtatt
actcagatgaagagcattgagtcgctggtctctctcagtgccagagtggactttgaatgc
aggactctccccctggtcagtcagtctcgtaggctggtgagagagggaccggtgactgag
atgatggatttctctgtgaaggagacagagaggagtgtctaccttcacctcttcaatgac
tatctgctgctgtcgctgcacaaagaagggggcaggttcacggtgatagaccatgctccg
gtgtcagaactgagagctgagaactgtcgggtcaaactgcactctctagagaagaacctt
ttccgcctccaccttaacaagaaagccctgctacttagcaccgacacacagggtgataaa
ctgcgttggatctcagctgtttccaggccccatcctgttattgactactctacagcacaa
gacttcacacagatgcagtgcgtccgagccttcgttgcccaccaaccagatgagctgtcc
ctggagaaggctgaggtcattctcgtccaccagaagagcagcgacggttgggtggagggg
accaggctgtcagacagacacagaggatggactcctgagtcccacttggaaaccatagcc
agcctcagggtccgacagcgcaacctgctggacgctctaaaaattaccacagccacggct
gcagtatga
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