Oncorhynchus tshawytscha (Chinook salmon): 112255269
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Entry
112255269 CDS
T05605
Symbol
ppfia4
Name
(RefSeq) liprin-alpha-4 isoform X1
KO
K26226
liprin-alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112255269 (ppfia4)
Membrane trafficking [BR:
otw04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
112255269 (ppfia4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_1
SAM_2
Motif
Other DBs
NCBI-GeneID:
112255269
NCBI-ProteinID:
XP_042180351
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All DBs
Position
LG07:41319917..41438961
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AA seq
1206 aa
AA seq
DB search
MMCEVMPTITEGDSGGPPRGGGAQNGSDPEANFEQLMVNMLDERDKLLESLRETQETLIQ
SQTKLQGALHERDVLQRQIYAALPQEFATLTKELNVCREQLLEKEEEISELKAERNNTRL
LLEHLECLVSRHERSLRMTVVKRQAPPPSGVSSEVEVLKALKSLFEHHKALDEKVRERLR
VALERVTTLEGQLSATTQELIIVRQRKEGESLDRNDATKPTWKRLPNGSIDAHDDGSRSV
ELQELLDRTNHELAQSRERSGTLSTRVAELEAELANTRRDLSRSEELSVKQQREQREGLA
QREDMEERITTLEKRYLAAQRETTHIHDLNDKLENELVTKDSLHRQSEEKVRQLQELLEM
AEQRLAQTMRKAETLPEVEAELAQRVAALTKAEERHGNVEERLRQLESQLEEKNQELSRA
RQREKMNEEHNKRLSDTVDRLLTESNERLQLHLKERMAALEDKNSLIQDLENSQKQLEEF
HHTRERLIGEIEKLRNEIDHLKRRSGVFGDGSHPRSHMGSASDLRFSVVEGQDGHYSSAV
IRRAQKGRLAALRNEPNKVCAVFEQEYSSLRGSVSHLLGSDVEAESDLDDDVSSVLLSPS
GQSDAQTLALMLQEQLDAINEEIRMIQVERESADLRADEIESRVNSGSMDGLNVTLRPRT
MPSSATAQSLASSSSPPTSGRSTPKHHTHNASHQLGIMTLPSDLRKHRRKIASPVEARED
KATIKCETSPPSSPRSLRLESNFAQLTGSLEDGRGGKAKKGIKSSIGRLFGKSKEKGRME
GGGTLGREGQPLPALMPGVDFEMSIGDTMTLGKLGTQAERDRRMKKKHELLEEARRRGLP
FAQWDGPTVVSWLELWVGMPAWYVAACRANVKSGAIMSALSDTEIQREIGISNPLHRLKL
RLAIQEMVSLTSPSAPLTSRTSSGNVWLTHEEMENLASSTKAENEEGSWAQTLAYGDMNH
EWIGNEWLPSLGLPQYRSYFMECLVDARMLDHLTKKDLRTHLKMVDSFHRASLQYGIMCL
KRLNYDRKDLDRRREESMHDMKDALVWTNEQVVHWVQSIGLKDYNTNLMESGVHGALIAL
DETFDYSSLALILQIPMQNTQARQVLEREFNNVLALGTDRRLEESGDDKTFRRSPSWRKR
FRAREGGGGMGMMAGSMETLPAGFRMPSMSMPPPSMALVPRKQLQPEAPPPAPQRLDPSA
VRTYSC
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgatgtgcgaggtgatgccaacgatcaccgagggggactcggggggtcctccccggggt
ggaggggctcagaacggctcggacccggaagccaacttcgaacaactgatggtcaacatg
ctggacgagagagacaagctgctggagtccctgcgcgagacccaggagacactcatccaa
tcacagaccaagctgcagggtgcgctgcatgaaagggatgtgctccagcgtcagatctac
gcggctctacctcaggagtttgccactctgaccaaggagctgaacgtatgtcgggaacag
ctgctggagaaagaagaggagatatctgaactgaaggctgagaggaacaacaccaggctt
ctcttggaacacctggagtgtctggtgtctcgtcacgagcgcagtctgaggatgaccgtg
gtgaagagacaagctcctcctccctctggggtctccagcgaggtggaggtcctcaaggcc
ctcaagtccctgttcgaacaccacaaagccctggatgagaaggtgcgtgagaggcttcgg
gtggctcttgagagagtgactacactagagggacagttatcagccacaactcaggagctg
atcattgtgaggcagaggaaggagggagaatctttggacaggaatgatgctaccaaaccc
acctggaagaggctacctaacggttccatagacgcccatgacgatggcagcaggtcagtg
gagctgcaggagcttctggatcggaccaatcatgagctggctcagagccgtgagcgttcg
ggcacgctcagtacacgagtggcagagctggaggcggagctagccaacactcgccgagac
ctgagtcgcagcgaggagctgtcagtcaaacaacagagggaacagagagaggggctggcg
cagagggaggatatggaggagcggattacaacgttagagaaacgttacctggccgctcag
agggaaaccacccacatccacgacctcaacgacaaactggagaacgaactggttaccaag
gactctctgcaccgacagagtgaggagaaggtgcgccagctgcaggagctgttagagatg
gcagagcagaggctggctcagaccatgaggaaggctgagacactaccagaggtggaggca
gagttggcacagagggtggcagccctcaccaaggccgaggagcgacatggcaacgttgag
gagcgactcagacagctggagtcacaactggaggagaagaaccaggaactgagcagggca
cgtcagagagagaagatgaatgaagaacacaacaagcgtttgtctgacacagtagaccgt
ctgctcactgagtctaacgagagactgcagcttcaccttaaagaacgcatggcagcactg
gaggacaagaactccctgattcaggatctggagaactcccagaaacagctggaggagttc
caccacaccagggagcgtctgattggtgagattgagaagctgcggaatgagatcgaccac
ttgaaacgccggagtggagtgtttggagatggatcacacccacggtctcacatgggcagt
gccagtgacctgcgtttctcagtggtagaagggcaggatgggcactacagctctgctgtc
atcagacgggcacagaagggccgcctggcagcgctacgcaacgaacccaacaaggtgtgt
gcggtgtttgagcaggaatactcgtctctacgtggcagtgtcagtcatctcctgggcagt
gacgtggaggctgagtcagacctagatgatgatgttagctccgtcctcctgtcacccagc
ggccaatcagatgcacagactctggctctgatgttgcaggagcagctggatgccatcaac
gaggagatcaggatgatccaggtggagagggagtctgctgacctcagggcagatgagata
gagtctcgtgtgaacagtggtagcatggacggactcaacgttacactccgcccccgtacc
atgcccagctcagccactgcccagtccctggcttcctcctcgtcccctcccaccagcgga
cgctctacccccaaacaccacacccacaacgccagccaccagctgggaatcatgaccctg
cctagcgacttaaggaaacaccgtagaaaaatagcatctccagtggaagctcgtgaggac
aaggctactatcaagtgtgagacgtctcccccctcctctccccgcagtctgagactggag
tccaacttcgcccagctcactggcagtctggaggacggacgagggggtaaagcgaagaag
ggcatcaagtcatctataggtcgtctgtttgggaagagcaaggagaagggcaggatggag
ggaggagggacactggggagggagggacagcctctgcctgccctgatgccgggagtagac
tttgagatgagcatcggagacaccatgactctgggcaagctgggcacgcaggcagagaga
gaccgcaggatgaagaagaaacatgagctgctagaggaggccaggaggagaggactgccc
ttcgctcagtgggatggaccaactgtggtctcctggctagagttgtgggtggggatgccc
gcctggtacgtggcagcctgtcgtgccaacgtgaagagcggtgccatcatgtcggccctg
tcggacacagagatccagagggagattggcatcagtaaccccctgcaccgcctcaaactg
agactggccatccaggagatggtgtccctcaccagtccctctgccccgctcacctctaga
acgtcctccggaaatgtgtggttaacccatgaagagatggagaacctggcttcctccact
aaagcggagaatgaggagggcagctgggctcagactctggcatacggggatatgaaccat
gagtggatcggtaatgagtggctgcccagcctgggtctgcctcagtaccgctcctacttc
atggagtgtctggtggacgcccgcatgctggaccacctcaccaagaaagacctccgcacc
cacctcaagatggttgacagcttccacagggccagtctgcagtatgggattatgtgcttg
aagagactcaattacgacaggaaagacctggaccgtcgtagagaggagagcatgcacgac
atgaaagatgcgttagtgtggaccaatgagcaggtagtgcactgggtccagagtataggt
ctgaaggactacaataccaacctgatggagagtggagtccacggggctctcattgctctg
gatgagacctttgactacagcagcctggctctcatactgcagatccccatgcagaacacg
caggctcggcaggttctggagagagagttcaacaacgtcctggccctgggcactgaccgc
agactggaggagagtggggatgataagacgttccgccgctctccatcgtggcgtaagcgt
ttccgagcgcgggagggaggagggggaatgggcatgatggcgggctccatggaaacactg
cccgctgggttccgtatgccctccatgtccatgcccccaccgtccatggccctggtgccc
aggaaacagctgcaaccagaagctcctcccccggctccccagagactcgacccctctgct
gtacggacgtactcatgctaa
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