KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112255276
Entry
112255276         CDS       T05605                                 
Name
(RefSeq) SWI/SNF complex subunit SMARCC2
  KO
K11649  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    112255276
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:otw03021]
    112255276
   03036 Chromosome and associated proteins [BR:otw03036]
    112255276
Transcription machinery [BR:otw03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     112255276
Chromosome and associated proteins [BR:otw03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    112255276
   PBAF complex
    112255276
   GBAF(ncBAF) complex
    112255276
SSDB
Motif
Pfam: SWIRM-assoc_2 SWIRM-assoc_1 SWIRM SWIRM-assoc_3 Myb_DNA-binding Myb_DNA-bind_6
Other DBs
NCBI-GeneID: 112255276
NCBI-ProteinID: XP_042180407
LinkDB
Position
LG07:44077761..44099096
AA seq 1064 aa
MAVRKKDGGPNVKYFETSDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTRLPMKSFLDFKSGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPVIYLSSDIEAKLLGKLKDIIKRHQGSVTEDKTCSSHVVVP
IPASLEEEEWVRPVMKRDKQVLLHWGYSPDSYDTWISASEVEAAVEDPPSPEKPRKVHAK
WILDLDQFNEWMNEEDYEVGEGGPKRKRISAKTLTDEVTTPGDERRDKKPGSAKKRKRSP
SPSPTPTSQESKKKNTKKGPTTPYTKSKRGQREEEPEDLTKDLDEPSPVPAVEEVTLPKT
ANTKKDSELTPVKGGTMTDLDEQEDESMETAEKEEEEGSPSVKGEPVKGSDLHEDNVTEQ
THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTPSS
LVPLQPKASQTPAAQQILSFPDKVKEKQPADLQNFGLRTDMYSKKTGPPKSKTAANAMRD
WTEQETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDMSSSLGPLV
YQPVPFSQAGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRRVE
EAARASGRQDPLYGLEGSGIAGTSLEEGDKPEESSEESKSDSQSSEEKRETKENKDGAME
EDEKQGENGKKEEERGREGEGERDRESEKTETEMGEREKEKEGKEALEEGQREGESEGER
KAKVERDVGEGNLATAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRH
FEELETIMDREREALEYQRQQLLADRQSFHMEQLKYAEMRARQQHFQQIQHQQHSQTGGP
HPAPAPTGPPPQGPLATQSQPAPSIPAPQPAPSPAPSASSVPMTGPSSAQAQPAEPQPTP
SGPHSSPPRQPGHSSTSTNTTPTLHESSAPGDTLHSSTAAPTPQ
NT seq 3195 nt   +upstreamnt  +downstreamnt
atggcggtgcggaagaaagacggcggcccgaacgtaaaatatttcgaaacgtctgatacc
gtctcgcaattcgacaatgtccgcgtttggttgggcaagaattataaaaagtacatccag
gcggagccccccaccaacaagtctctgtccagcctagtggtccagctactgcagtttcag
gaggaggtgttcggacgacatgtcagcaacccacctctcaccaggctgccgatgaagagt
ttcctggactttaagtctggtggggctctctgccacattctggcagcagcctacaagttc
aagagtgatcagggctggcgcaggtttgactttcagaatccttctcggatggaccgcaat
gtggagatgttcatgactatcgagaaatccctggtacagaacaactgtctgagtcgacca
gtgatctacctgagctctgacattgaggccaagctgctggggaaactgaaggacataatc
aagaggcaccagggctcagtgactgaagacaagacatgcagctcccatgtggtggttccc
atccctgccagtcttgaggaggaggagtgggtgcgtccggtgatgaagagagacaagcag
gtgctgctccactggggatactctcctgacagctatgacacctggatctcagccagtgag
gtggaagcagctgtggaagatccgcccagcccagagaaacccaggaaggtccatgccaag
tggatcctggacctggaccagtttaatgagtggatgaatgaggaggactatgaggtcgga
gaggggggccccaagaggaagaggatctcagccaagaccctgacggacgaggtgaccacc
ccaggggacgagcgccgggacaagaagcccggcagcgccaagaagaggaagcgctcaccc
tccccctcgcccactccaacatcccaggagagcaagaagaagaacaccaagaaagggccc
accaccccgtacactaagtctaagcgaggccagagagaggaggagccagaggatctgact
aaagatctggatgaaccatcacctgtacctgctgtagaggaggtcaccctacctaagaca
gccaacactaagaaagactctgagttgacaccagtgaaaggaggtaccatgacagacctg
gatgagcaagaggatgaatccatggaaactgcagaaaaggaggaggaggagggctctccg
agtgtgaaaggagagccggtgaaagggtcggacctccatgaggacaacgtgactgagcag
acccaccacatcatcattcccagctacgctgcatggtttgactacaacagtgtccatgct
attgagcgcagagccctcccagagtttttcaatggcaagaacaaatccaaaacccctgag
atttacctggcctacaggaacttcatgattgacacgtacaggctgaacccgcaggagtac
ctcacctccaccgcctgtcgtaggaacctggccggagacgtgtgtgccatcatgagggtg
catgcattcctggagcagtggggtctgatcaactaccaggtggactcagagagccggccc
acccccatgggccccccgcccacctcccacttccacgtcctggctgacaccccttccagc
ctggttcccctgcagcccaaggcatcccagactccggcggcccagcagattctgtcattc
cccgataaggtgaaggagaagcagccagccgacctgcagaactttggcctgaggacagac
atgtacagcaagaagactgggcctcctaagagtaagactgctgccaatgccatgcgagac
tggaccgaacaggagacactactgctgctagagggtctggagatgtacaaggatgactgg
aacaaggtgtcagagcacgtgggctcacgtacccaggacgagtgtatcctgcacttcctg
cgtctgcccattgaggacccatacctggaggacatgtcctcgtccctgggccccctggtc
taccagcccgtccccttcagccaggcaggcaaccccgtcatgagcaccgtggccttcctg
gcctccgtggtggacccgcgcgtggcctccgcagccgccaagtctgccctggaggagttt
tcccgtatgaaggaggaggtcccagcagcactggtggaggcccatgtgaggagggtggag
gaggcggcgcgggcaagtggcagacaggaccccctctacggcctggagggcagcggcatc
gcaggcaccagcctggaggaaggagacaaacctgaagagagcagtgaggagagtaagagt
gacagccaatccagtgaggagaagagggagaccaaggagaataaagatggagccatggaa
gaggatgagaagcaaggagaaaacgggaagaaggaggaggagagagggagagagggagaa
ggagagagagaccgagagtctgagaagacagagacagagatgggtgagagagagaaggag
aaggaagggaaggaggccttggaggagggccagagagaaggagagagcgagggagaaagg
aaggcgaaggtggaacgggatgtgggagaggggaacctggctaccgctgctgcctctgcc
ctggctgctgctgccgtcaaagccaagcacctggctgcggtggaggagagaaagatcaag
tctctggtggctctgctggtggagactcagatgaagaagctggagatcaaactgagacac
tttgaagagctggagactatcatggaccgagagagggaggctttggagtaccagaggcag
cagctgctggcagaccgtcagtcgttccacatggagcagttgaagtatgcagagatgagg
gcgcgtcagcagcacttccaacagatacagcaccagcagcatagccagactggaggccca
caccccgccccggctcccacgggccccccaccccagggccccttagccacccagtcccag
ccggcccccagtatccctgcaccacaaccagctcccagcccagcaccctctgcctcctcc
gtccccatgactggcccctcctctgcccaggcccagcccgctgagccccagccgaccccc
agtggtcctcactcctcacctccccgccaaccaggccactccagcaccagcaccaacacc
accccaacactccacgagtccagcgcccctggggatacactccattcctcaaccgctgct
cccactccacagtga

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