Oncorhynchus tshawytscha (Chinook salmon): 112255281
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Entry
112255281 CDS
T05605
Name
(RefSeq) collagen alpha-1(VII) chain isoform X1
KO
K16628
collagen type VII alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
112255281
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
fn3
VWA
Kunitz_BPTI
VWA_2
Pur_ac_phosph_N
DUF4992
DUF4998
fn3_2
VWA_3
Motif
Other DBs
NCBI-GeneID:
112255281
NCBI-ProteinID:
XP_042180423
UniProt:
A0AAZ3R6Z0
LinkDB
All DBs
Position
LG07:complement(45395024..45521480)
Genome browser
AA seq
3146 aa
AA seq
DB search
MWSWVFPLAVLLSSVHQAEAQGRCNNVGAADIVFLIDGSSSIGRANFLQVKGFMAGIVKP
FTSSVGQSGIRFGAVQYSDTSRVEFTFTTYLNGTELVSAVENLNYKGGNTRTGAGLKFVA
DNFFNPTSIRNVSKVCILITDGKSQDNVRDPAQKLRSLGVEMFAVGIKSADQTELALIAT
PPQRDYTFFVGDFKLLNTLLSLVGPRVCSSSGGVYASDEAFSGPSNLQFSSQTSDSLRFR
WTPAGGPVSGYVVQYTPLSGLGQPITAELRQETVSAGQRSFVARELKSGTDYLVTIIAQY
PNSVGEPVSAKARTKSLPGVSGLRLVQAGFFSLSLGWDAPTSQIQGYRLTYGPRGQPAAQ
LLEQSLAADSTSVTLERLLPDTEYVLTLYPLFPRNSVSPATLTSRTLRLEAAQQLSVETV
SERSVRVLWRGVGGARAYRLVWGPFTGRDVKSFEVAGDTETHTLLNLQPDTEYIVTVIAL
YEDNTEGPAATARFKIERLEQQVLKAATTGSSSIRLTWNLIQSARGYRLEWRQGEGGRVQ
SQSFSRSTTSFDLTGLQPSTEYVITLFTLYDGREEATPVSTSPAVEQQVGSVSNLRVVES
LGSTVRLGWTGVAGATQYRILMVNTEAQTEEIRSVPGSQTTLDLRDLTEGVSYGVSVTAV
VGDNEGDPVTVYIKAEQALEKVTNLRVTNINGRRLRIAWAGVLGATGYRVTWRQGNNAEQ
SRDLGPEASTYTLEGLQPDEAVVLGLAAVIGQRIGEVVTLSARTNGNTGSSSSTVSGLRI
VDVTSQRIRITWSPVSKATDYKITWRSEDGVESSRTVAADVTSFTIDSLQEDSSYRVSVS
SLIGSREGRPASLNTRTASDQGVVGTVTSLQVQESRGEVVRVTWVGVQGATAYRVSWKRI
DGGEERSQLVGGDLTAVDLEQLDPGAQYEVQVMALVQNRQGTPVSVRVTTPGEPAAVARV
EGVRVLEATPGVLRLVWRGMAGVTGYRIYWRSALGEAESSRLIGRDATSFDLDGLRPGVS
YTVRLAAIFRDRESQAVTITASTAPLQPIRGLRAMEVTQNSVLLDWVPLTGATGYVLRWR
EERDTGPGQSIPLPGTSSSYRVTGLRLGLRYRFTLQPSFQREVGPETSLDKRTVCVGGRL
DVVFLVPASRDRTSLVEPLLSLLTSAAGSLTSIGARDSQVGIVVYSARPKVWFLLSRHSN
SETLLQEILSTPFEDGPGNAIGQAVTFTRQFLLSPTAGRRARVPGVVVIIADKKSSDNIT
VPASAVKASGVTVLAVGIGRADSEELRQAVTDGSTQNLLYARDTTQLGTLHADLADLLCG
VARIPEGGGPVGEPCTIQCPRGDRGERGEKGEIGRDGTDGRKGEPGRDGLPGRDGPRGPE
GRQGLPGGSEAPSVGVRGEKGERGFPGLDGGPGLPGRPGTPGPGGVPGSQGLSGIRGDPG
DPGVKGASGAKGDRGDRGEPGSAVSGGGLPGRKGEPGIPGLPGTTGRPGTEGAKGFVGPA
GIPGQDGRPGIPGALGLSIKGDTGSTGERGPPGVGSGSAVKGEKGSPGSDGNPGAQGPRG
LTGQQGAKGDKGESAEGLPGPSGKTGEPGDRGLRGPAGGLGVKGDRGQPGEPGSQGDRGE
RGLAGLLGERGESGQPGSTGAPGLRGLPGTSGLPGEKGSEGAKGEPGRSGPGLGGKKGEQ
GEPGLPGLEGPRGQKGEPAQKGEKGPPGAGIPGQSGPKGEQGDRGVPGLAGRLGTKGDPG
DPGERGETGRAGPAGKNGLPGKEGAKGDKGDEGTPGESGLPGKAGERGVRGLSGQPGRAG
EKGDLGDSGAHGRNGSPGSIGPRGEKGVEGAQGLPGPPGNMRDIEQKLKGERGEKGDAGD
PGEHGGKGQKGETGPSGATGLRGLEGQRGPSGARGDTGERGGPGEKGERGASGLDGRNGL
DGKPGAPGPAGLRGDAGKLGDPGRDGLPGLRGAQGLPGPIGPAGNPGTPGKAGEDGKPGT
AGKMGEDGEPGEDGRKGDKGDPGAAGRDGRDGLKGDRGLAGPTGPTGLSGPPGVSGTIGP
PGQVVYMKGAPAPSIPGPQGHTGTPGEPGIPGAVGARGEKGAVGGKGESGDPGEDGKPGR
PGTAVDVQKALSNLGIEVQDLKLVVERRNVLVKPVVEQAEKGQRGDKGEAGQRGPAGIDG
ARGLAGERGVKGEQGEQGPVGATGPIGRAIGEKGPVGPPGQAGEPGKPGIPGVPGRAGEL
GEAGRPGDKGDRGEKGDKGEDGKNGLAGLVGPPGAKGASAEEGQAGLPGARGPPGVTGPK
GEPGALGPQGSKGDGGIAGSRGDKGDRGPSGEQGRNGFQGTAGEPGKPGQDGKPGLPGFP
GVLGRPGNLGEPGIRGSTGPIGTNGPPGPPGVKGNQGVPGVGVQGLSGPQGSMGLPGPAG
PPGAVGPSGPPGLPGQTGEGGKPGVPGRDGIPGKEGTPGLPGKQGIAGPMGSTGLKGEQG
DSGPPGKAVAGPPGVKGAQGPAGVTLSGTMGERGLPGLRGERGDKGPAGTKGDRGPAGEN
GEPGEDGGRGHAGPKGDKGERGIGLAGPPGQLGPQGLKGDTGLPGPAGPPGARGIAGTPG
LAGLRGENGTPGPPGPLGPRGLQGFPGQAGTPGGPGPPGPTGLVGTPGTAGGKGDKGAIG
AGVPGLRGERGDPGPRGEEGRAGLDGERGLVGSPGGKGGSGEKGELGPQGDKGEKGDTLL
VGGPTGEKGNKGETGDRGPKGGQGEKGLKGSDGPAGEQGLRGEPGDRGSTGFQGARGPGG
QKGEAGLPGVPGESGTPGKDGMPGFRGEKGDMGITGMRGIKGDRGSKGACGSDGPKGEKG
DSGIHGRSGLPGRKGEQGELGSPGATGTAGKEGLIGPKGDRGLDGVLGPKGNQGEKGERG
PSGIPGPPGPRGVDGSSGLTGSQGPTGAKGPEGLQGQKGERGPLGPAMIGPRGIPGKPGD
RGKEGELGPDGAKGDRGEPGLTEDEIRTYVRTEMSQHCACGGVVVTETMSRPRARPVPEQ
QLARQGKDGKDGRELRVVVNTNDPDYEDIYSIESYDDSMAMEQSIHLTPAANHNNGETVT
VDPLKAKRSRREVKGEAPVDLCVLPLEEGSCGRFTLRWYFNSQVQACRPFIYSGCEGNGN
RFLHQETCEERCLPEDTDAVPLKKGR
NT seq
9441 nt
NT seq
+upstream
nt +downstream
nt
atgtggagctgggttttccctttggctgtcctgctgtcctcggtgcaccaggctgaagcc
caaggcaggtgtaataatgttggagcagcagacatagtcttcctgatagatggctcatca
agtatcggcagggccaacttcctgcaggttaagggcttcatggctggcatcgtcaagccc
tttaccagctctgtgggccaatcagggatccgcttcggggccgtgcagtacagcgacacc
tctagggtggagttcaccttcacaacctacctgaatggcactgagctggtcagcgctgtg
gagaacctcaactacaagggtggcaacactcgcacaggtgccggcctcaaatttgtcgct
gacaactttttcaaccccacctccatccggaacgtctcaaaggtctgtatactgatcaca
gatggaaagtctcaagacaatgtaagggacccagctcagaagctgcggagtctgggagtg
gagatgtttgcagtgggtataaagagtgcagaccagactgagttggctctgatagccact
cctcctcagagggactacacattctttgtgggggactttaagctgctcaacacactgctg
tccctggtgggcccacgtgtgtgttccagctcagggggagtctatgctagcgatgaggct
ttctccggtccctctaacctccagttctcaagccagacctctgattcgctcaggttccgg
tggactcccgcaggggggcctgtgagtggctatgtggtgcagtacacacccctttctggc
ctgggccagccaattacagcggagctgcgtcaggagacagtgtctgcaggtcagaggagc
tttgtggccagagagctgaagtcagggacagactacctggtgacgatcatcgcccaatac
cccaacagtgtgggagagcctgtctctgccaaggcacgaaccaagtctctaccaggggtg
tctggtcttcgtctagtccaggctggtttcttctccctctctctgggctgggatgccccc
acatcacagatccagggctatagactcacctacggaccccgaggtcagcctgcagcccag
ctattggagcagtctctggctgcagactccacctctgtcaccctggagaggctactgcca
gacacagagtacgtcctcaccctataccccctgttcccccgaaactctgtctcccccgcc
accctcacctcacgcacattgcgtctggaggcggcccagcagctgtcagtagagaccgtg
tcagagcgtagcgtccgggtgctgtggaggggagtgggtggagccagggcctacagactg
gtctggggaccattcacaggacgtgatgtgaagtctttcgaggtggctggcgacactgag
actcacaccctgttgaacctgcagccagacaccgagtacattgtcactgtcatcgccctc
tacgaagacaacacagagggacctgctgctactgccaggttcaagatagagcgtctggag
cagcaggtgctgaaggcagccaccaccgggtcctcctccatccgcctcacctggaaccta
atccagtctgccaggggataccgcctggagtggaggcagggggaaggtggcagagtgcaa
agtcagtcgttctcccggagcaccactagttttgatctgacagggctgcagcctagcact
gagtatgtcatcaccctgttcaccctgtatgatggacgagaggaggccacccccgtctcc
acctctccagcagtggaacagcaggtggggagtgtgtccaacctgcgagtggtagagtcc
ctgggcagcactgtgcgactgggatggacaggggttgccggggcaacacagtaccgtatc
ctcatggtcaatactgaagcgcaaacagaggaaatacgcagtgtccctggaagccagaca
acccttgaccttagggatctgacggagggcgtgtcttatggggtcagcgtgaccgctgtg
gtgggagacaacgagggggacccggtcactgtttacatcaaagcagaacaagcattggag
aaagtgaccaacctacgtgtgacaaatatcaatggtcggcgactccgaatcgcctgggca
ggtgttttgggggcgacagggtacagggtcacgtggagacaaggcaacaatgctgagcag
tcccgtgatctgggaccagaggcctcaacctacacgttggaggggttacagccagacgag
gctgtggtcctgggtttggcggctgtgattggtcaacgcatcggggaagtggtcactctc
tcagccaggaccaatgggaacaccggctcaagctcaagcacggttagcggcctgcgaatc
gttgatgtcacctcgcagaggatacgcatcacatggtcacctgtttccaaggcaactgac
tacaagattacctggcgcagtgaagatggagtggagtcctcccgcacagtggccgctgat
gtcacttccttcaccattgacagccttcaggaagattcctcctaccgggtgtcagtctcc
tcactgattggctctcgagaaggacgccccgcctccctgaacaccagaacagcatcagac
cagggtgttgtgggaacagtgacctcactccaagtccaggagtcccgcggtgaggtcgtc
agggtaacatgggtgggcgtgcagggagcaacagcctatcgtgtgtcttggaagcgaatt
gatggtggggaggagaggagccagctggtgggtggtgacctgacagcggtggatctggag
cagctggacccaggggctcagtatgaggtgcaggtcatggccctggtccagaacagacag
ggaaccccggtctctgtcagagtcaccacaccaggggaacctgctgctgtagcccgggtg
gaaggggtcagggtgctggaggctaccccaggggtgctgcgtctggtctggagagggatg
gccggggttacagggtaccgcatctactggagatcagccctgggtgaggctgaatcgagc
cgtctgataggtagagatgcaacctcgtttgacctggatggtctgcggcctggggtgagc
tacactgtgaggctggctgccatcttcagggacagagagagtcaagctgtcactatcact
gcctccacagctcccttacagcctataaggggtctgcgtgctatggaggttacccagaat
tctgtgttgttggactgggttccattaacgggtgctacaggatacgtcctgcgctggaga
gaggaaagggacactggtccgggtcagtccatccctctgcctgggacatccagctcttac
agggtgactgggctgcgtctgggactgaggtaccgcttcaccctgcagcctagcttccag
agggaggttggccctgagacctcactggacaaacgtactgtgtgtgtaggtggtcgtctg
gacgtggtgttcctggttccagcttccagggatcggaccagcctggttgagcccctactc
tctctcctgaccagcgctgccggctccctcaccagcatcggagcccgggactcacaggtg
gggattgtagtatacagcgcccggcccaaggtctggttcctgctcagccgccatagcaac
agtgagacactgcttcaggagatcctgtccacgccttttgaagacggcccagggaatgct
ataggccaggcggtgacgttcactagacagttccttctcagcccgacagctggtcgtaga
gcaagagttcctggcgtagtggtgatcattgcagacaaaaaatcatccgacaacatcact
gtcccagccagtgctgtcaaagcctcaggtgtcacagtgctggcggtgggtataggtcgg
gcggactctgaggaactgcgccaggcggtgacagatggcagcacccagaacctcctatat
gctcgtgataccacccagcttggcaccctgcacgccgacctggctgacctactgtgtggc
gtcgccaggataccagagggagggggcccagtgggagagccgtgtaccatacagtgtcct
cggggtgatcgaggggagcgaggagaaaagggagagataggacgagacggtactgacgga
cgcaaaggagagcctggtcgtgatggtttgcctggcagggacggccccagggggcctgaa
gggcgacagggcctgcctggcgggagtgaggccccctcagttggtgttagaggggagaag
ggggagaggggttttcctggtctggatgggggtccaggattgccagggcgaccagggacc
ccgggccctggaggagtaccgggttcacaggggctatcaggtatcagaggagatcctggt
gatcctggggttaaaggagcatcaggggctaagggtgaccggggcgacaggggtgaacca
gggtcggctgtttcaggaggaggtctgcctggcaggaaaggagaaccagggattccagga
ttaccaggtaccacagggcgtccaggaactgaaggggccaagggctttgtgggacctgca
gggatcccaggacaggacggtcgccccgggataccaggcgcccttggcctctccatcaag
ggagatacgggcagcacaggagagaggggacctccaggagtgggcagtggctcggctgta
aagggggagaagggatcaccgggttctgatggaaacccaggagctcaaggtcccagagga
cttacaggacaacagggagccaaaggagacaagggagagagtgcagaggggttgccagga
ccgtctgggaagacaggagagcctggtgatcggggtctccgtgggcctgctggaggcctt
ggagtcaagggggaccgtggccagccaggtgagcctggatcacaaggtgacaggggggag
agaggacttgctggcttgctaggggagaggggggaaagtggacagccaggctctacaggg
gctccaggcctgaggggtttgcctggcaccagtggattaccaggggagaagggcagcgag
ggcgctaagggagaacctggccggagtgggccaggcttaggtgggaagaaaggtgaacag
ggtgagccgggtctgccaggtctggaggggcctaggggccagaaaggcgagccagcccag
aaaggtgaaaaaggtcccccaggtgctggcattcctggacagtctggacctaaaggagag
cagggggatcggggagtccctggcttagctggaagactggggaccaagggagacccaggt
gacccaggagagagaggggagacaggacgagctggacccgcaggaaagaatggcctccca
gggaaagagggagccaaaggagacaaaggcgacgaaggcactcccggggagtctggtcta
ccagggaaggcaggggagagaggagtacggggtctgtcgggtcagcctgggagagcaggg
gagaagggagacctgggagactctggagcgcacggacgcaacggcagcccaggatctatt
ggaccaagaggagagaaaggagttgagggagctcaaggcctcccaggacctccagggaac
atgcgcgatatagagcaaaagcttaaaggagaaagaggagaaaagggggatgctggcgat
ccgggagagcacgggggcaaaggtcagaagggcgagacagggccctcaggggccactggg
ctgcgtggtcttgagggacaacgtggaccttcaggggcaagaggtgacacaggagagaga
ggaggcccaggagagaagggtgagagaggtgcgtctggactggatggacgcaacggtttg
gacggcaaaccaggtgcaccaggaccggccggcctgaggggagatgcagggaaactaggg
gatccaggaagagatgggctgccaggactgagaggtgcacagggcctcccaggccctatt
gggcctgcaggaaatccaggcacacctggcaaagcaggagaagatggaaaaccagggact
gctgggaaaatgggcgaggatggcgaaccgggggaagatggcaggaagggtgacaaagga
gaccctggggctgctggaagagatggccgtgacgggctgaagggagaccgaggccttgca
gggcctacagggccaactggtctatctgggcccccaggggtttctggcaccatcggacct
ccaggacaggtggtctatatgaagggagcgccagcaccatctattcctggccctcagggg
catacaggaaccccaggtgagcctggaatcccaggggctgtaggagccagaggggagaaa
ggagcagtgggtggtaaaggtgaaagtggtgaccctggagaggacgggaaaccgggcagg
cctggaacagcagtggatgtgcagaaggccctctctaaccttgggattgaggtgcaggac
ttgaagttggttgtggagaggaggaatgttctggtcaagcctgtggtggagcaagctgag
aagggccagagaggagacaagggagaggccggacagagaggaccagcagggatagacggt
gctcgcgggctggctggggagagaggtgtgaagggagagcagggggaacaggggcctgta
ggggccacaggacccatagggagggccatcggagagaagggcccagtggggcccccggga
caggctggagaaccaggaaaacctggaatacctggagtaccagggagagccggagaactg
ggagaggctggacgacctggagataagggggatagaggagagaaaggtgacaaaggagag
gatgggaaaaatgggctagctggattagtgggcccacctggagcaaagggtgcttctgca
gaagagggtcaggctggactccccggagcaagggggccccctggggtcacaggaccgaaa
ggagagcctggtgctttaggaccacagggatccaaaggagacgggggtattgcaggttcc
cgtggagataaaggcgaccgaggtccatctggagagcagggacgcaatggctttcagggg
acagcaggagaacctggaaaaccgggacaggatgggaagccgggcctgcctgggttccct
ggagtgctgggcagaccggggaaccttggagaacctggaattagaggatcaactggtccg
atcggtaccaacgggcctccaggtccaccaggggtcaagggtaatcaaggagtgcctggg
gttggcgttcagggactgtctggtccccaaggcagcatgggattgccgggacctgcaggg
cctcccggagctgtgggtccgtcaggacctccaggtctgccggggcagacgggcgagggg
ggcaagccaggggtcccaggaagagatggaatacctggaaaagagggaacaccagggttg
ccaggcaaacagggtatcgctggaccaatgggctccacagggttgaaaggggagcagggg
gacagtggccccccaggaaaggctgtagcaggaccccctggtgtgaaaggagcacaggga
cctgctggtgtgaccttatctgggacaatgggagagagagggctgccagggctacggggt
gagaggggggacaagggtcctgcaggcaccaaaggggacaggggccctgctggtgaaaat
ggcgagcctggagaagatgggggcagaggacatgcagggcctaaaggagacaagggagag
agaggcatcggactggcagggcctcctggtcagctgggacctcaagggttaaagggagac
acaggactcccgggcccagcaggtcctccaggagcccgtggcatagcagggacccctggt
ctggccggcctgagaggagagaacggaaccccaggacccccaggacctctaggacccagg
ggtctccaaggctttcctggtcaggcagggacccctggaggtcctgggccccctggaccc
accggcctagttggtacaccgggaactgctggaggcaaaggggacaagggagcgattgga
gcaggagtacctggattgagaggcgagagaggagacccagggccccggggggaggagggt
cgagctggtttggacggggagagaggactagtgggatctccgggtggcaaaggaggcagt
ggagagaagggtgaattggggcctcaaggtgacaaaggagaaaagggcgatactctcctg
gtgggaggacctacaggagagaagggtaacaaaggagagacgggtgaccgagggccaaaa
ggggggcagggggagaaaggcttgaaaggcagtgacggcccagctggggagcagggtctg
agaggtgagccaggagacaggggctctacagggttccagggggccagaggtccaggagga
cagaagggagaggcgggcctgcctggtgtacctggagaatctggtacaccaggaaaagat
ggaatgccaggctttagaggagagaagggagacatgggaataactggaatgcgtggaatt
aagggcgaccgaggatcaaagggggcgtgtggatcggacggaccaaaaggagaaaaggga
gattcagggatccatgggcggtcagggttgcctggaaggaaaggtgagcagggagaattg
ggttctccaggggccactggaaccgcaggcaaggagggattgatcggacccaagggtgac
cgaggcttggatggagtcttggggcccaaaggaaatcagggagagaagggtgaaaggggc
ccctcaggtatccccggccccccaggccccagaggagtagacgggtcctctggactgaca
gggtctcagggaccaactggagctaagggccccgaaggcctccaaggacagaagggggag
cgggggcctcttggtcctgccatgataggtccacgcggtatcccaggtaaaccaggagac
aggggcaaggagggggagttgggtccagatggagccaagggagacagaggagaaccaggc
ttgacggaggatgaaattcggacatacgtccgcacagaaatgagccaacactgtgcttgt
ggaggtgttgttgtgacagaaaccatgtcccgccccagggcgcgtcctgttccagagcaa
cagctggcccggcagggcaaggatggtaaggatgggcgtgagctgcgtgtggtggtgaac
accaatgaccctgactacgaagatatctactctatagagagttacgatgattccatggct
atggagcagagcatccacctaacccccgctgcgaatcataacaacggtgagacagtcact
gttgaccctctgaaagcaaaaaggtccaggagagaggtcaaaggggaagctccagtggac
ctttgtgtgttgcccctggaggagggcagctgtgggaggtttactctgcgctggtacttt
aacagccaggtgcaggcgtgtagacccttcatctacagcggctgtgagggcaacggcaac
cgcttcctccatcaggagacctgtgaggagcgctgcctcccggaggacacagatgctgtt
cctttgaaaaaggggcgatga
DBGET
integrated database retrieval system
