Oncorhynchus tshawytscha (Chinook salmon): 112255529
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Entry
112255529 CDS
T05605
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1 isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04517
IgSF CAM signaling
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
112255529
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
112255529
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
otw04812
]
112255529
Cytoskeleton proteins [BR:
otw04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
112255529
Intermediate filaments
Intermediate filament-binding proteins
112255529
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
SOS1_NGEF_PH
CH_2
PH_11
DUF7854
Motif
Other DBs
NCBI-GeneID:
112255529
NCBI-ProteinID:
XP_024284283
LinkDB
All DBs
Position
LG01:complement(68834269..68961653)
Genome browser
AA seq
2360 aa
AA seq
DB search
MELQRATSMPGPLSPGPVFPGSHSPEPLSPSSGPGPSLASSPGPDPGYSAKQAAFNYNQL
EGRFKQLQDEREAVQKKTFTKWVNSHLARVSCRITDLYMDLRDGRMLIKLLEVLSGEKLP
KPTKGRMRIHCLENVDKALQFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQD
IRVETEDNKEKKSAKDALLLWCQMKTAGYPNVNIHNFSTSWRDGMAFNAILHKHRPDLID
FDKLKKSNAHHNLQNAFNLAEQHLGLHKLLDVEDISVDHPDEKSIITYVVTYYHYFSKMK
ALKVEGKRIGKVLDNAIETDNMIQKYESLASDLLEWIEQTIIILNNRRFANSLVGVQQQL
QAFNTYRTIEKPPKFTEKGNLEVLLFTIQSKMRANNQKVYIPRDGKLISDINKAWERLEK
SEHERELALRTELIRQEKLEQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLQAVEAAT
KKHEAIETDIGAYEERVQAVLSVAKELEAENYHDIKRVTARKDNVLRLWEYLLELLKARR
IRLEMNLGLQRVFQEMLYIMDWMDEMKMLLLSQDYGKHLLGVEDLLQKHTLVEADIAIQA
DRVKAVNNNAQKFAIDAEGYKPCDPQVIRDRVAHMEFCYAELSQLAADRCARLEESRRLW
KFFWEMAEEEGWIREKEQILSSEDCGKDLTGTVRLLSQHRAFEDEMIGRAGHLQQTIKQG
EALVAADHFGADKIRERIQDIQEQWAALERLSSVRKTRLEEACNLHQFQADADDIDAWML
DVLRIVSSADVGHDEFSTQALVKKHKDVAEEIAGYRPVIDALHEQSKTLPGEQTGSEEVQ
GRLSGIEERYKEVAELTRLRKQALQDALALYKMFSEADACEVWIDEKEQWLNSMEIPEKL
EDLEVVQHRFESLEPEMNNQASRVAVVNQIARQLIHSGHPSEKEIKAQQDKLNTRWSQFR
DLVDLKKDSLNSALGVQNYHLECNETKSWIREKTKVIESTQELGNDLAGVMALQRKLTGM
ERDLTAIEDKLGELGKEGEHLAAEHPDQAQGIMGRLGEITGVWDEMKGTLKNREESLGEA
SKLQQFLRELDDFQSWLSKTQTAIASEDMPNTLTEAEKLLAQHEGIKNEIRNYEVDYQKM
RDMGEMVTQGQTDAQYMFLRQRLQALDTGWNELHKMWENRQNLLSQSHAHQLFLRDTKQA
EAFLNNQEYVLAHTEMPTTLEGAEGAIKKQEDFMTTMDANEEKINAVVDTGRRLVSDKNI
NADRIQEKVDSIDERHQKNRLAASELLCKLKDNRDLQKFLQDCQELSLWINEKMLTAQDM
SYDEARNLHSKWLKHQAFMAELQSNKEWLDKIEKDGMQLIAEKPETEAMVKEKLAALHKM
WDDLESTTQTKAKCLFDANKAELFTQSCADLDKWLVGVDGQIQSDDYGKDLTSVNILLKK
QQMLESQVEVRQKEVEELQSQAQVLSQEGKDTDEVDGQRRIVEKKFQQLLDPLKKRKGNL
MASREIHQFNRDVEDEILWVEERMPLATSTDHGNNLQTVQLLIKKNQTLQKEIQGHQPRC
DDIFERSQQVLKDDDNSPSGEGIRQRLADLRRLWAQILEETAKRHGRLEEAHKAQQYYFD
AAEAEAWMSEQELYMMSEEKAKDEQSSVAMLKKHQILEQAVEDYAETVHQLSKTSRGLTA
AGHPESERIGMRQSQVDKLYAGLKDLSEERRGKLDERFRLFQLNREVDDLEQWIAEREVV
AGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNQLADELINSGHADAATIAEWK
DGLNEAWADLLELIDTRTQILAASFELHKFYHDAKEILNRILDKHKKLPEELGRDQNTVE
TLQRMHTTFEHDIQALGTQVRMLQEDAVRLQSAYAGDKADDIQKREGEVLEAWRTLLEAC
DGRRVRLLDTGDKFRFFSMVRDLMLWMEDVIRLIEAQEKPRDVSSVELLMNNHQGIKAEI
DARNDSFTNCIELGKSLLARKHYALEEIKEKLLQLTDKRKDMIDKWEDRWEWLRLVLEVH
QFGRDAGVAESWLLGQEPYLSSREMGQNVDEVEKLIKRHEAFEKSAATWEERFSALERLT
TMELLEVRRQQEEEERRRNPPPAETQTDTASPQQKEGEQVSLNGLPSDQDSPRDNGEGSD
IVNGVAEPSPGGSPSAARKGKPSQAATLPAKSLDSTPANQMEGLLHRKHEWEGHNKKASS
RSWHNVYCVINNWEMGFYKDIKSASQGIPYHSEIPISLKDAACEIALDYKKKKHVFKLKA
TDGNEYLFQAKDDEEMNSWMEAISSAASSDKTEVTPSSHSTPASSRAQTLPASVALATES
SPGKREKDKEKRFSLFSKKK
NT seq
7083 nt
NT seq
+upstream
nt +downstream
nt
atggagctacagagggcgaccagcatgcctggccccttgtccccagggcctgtctttcca
gggtcccactccccagaacccctgtccccttcctctgggcccggcccctctcttgcctcc
agccccggccctgatccgggctactctgctaaacaggctgccttcaactacaaccaactc
gagggccgatttaagcagctgcaagatgagcgtgaagcggtgcagaagaagaccttcacc
aagtgggtcaactcccacctagccagagtgtcctgcaggatcactgacctctatatggac
ctgagagatggacgcatgctcatcaaactactggaggttctctctggagagaaactgccc
aagcccactaaggggcgcatgcgtatccactgcctggagaacgtggacaaggccctgcag
ttcctcaaggagcagagggtccacctagaaaacatgggctctcatgacatcgtcgacggc
aaccaccgcctcacccttggcctcatctggaccatcatcctccgcttccagatccaggac
atcagagtggagactgaggataacaaggagaagaagtcggctaaagatgctctgctgctc
tggtgccagatgaagaccgcaggatatcccaacgtaaacattcacaacttcagcaccagc
tggagggatggcatggctttcaacgccatcctccacaaacacagacctgacctgatagac
tttgacaagctgaaaaagtcaaatgcccaccacaacctgcagaatgccttcaacctggca
gagcaacacctgggcctccacaagctactggacgtagaggatatcagcgtggaccaccct
gatgagaagtccatcatcacctatgttgtgacctactaccactacttctccaagatgaag
gccctgaaggtggagggcaaacggattgggaaggtgctggacaatgccattgagaccgat
aacatgattcagaaatatgagagtctggcctctgaccttctggaatggattgaacagacc
atcatcatcctcaacaaccgcaggtttgccaactccctagtgggggtgcagcaacagctc
caggccttcaacacctaccgtaccatcgaaaagccgcccaagttcactgagaaaggcaac
ctggaggttctcctcttcaccatccagagcaagatgagggccaacaatcagaaggtctac
atcccgcgggacggaaaactcatctcagacatcaacaaggcctgggagaggctggagaag
tcagagcatgagagggagctggctctaaggacggagctgattcgtcaggagaaactggag
cagctggcccgccgctttgaccgcaaagcagccatgagagagacctggctgagtgagaac
caacggctcgtctcacaggacaactttggcttcgacctgcaggcggtggaggccgccacc
aagaagcacgaggccatcgagacggacatcggcgcctacgaggagcgtgtgcaggcagtg
ctctccgtggccaaggagctggaggcagagaactaccatgacatcaagcgcgtgacagcg
aggaaggacaacgtgctgcgtctgtgggagtacctgttggagctgctgaaggcccggcgc
atccggctggagatgaacctgggactgcaaagggtcttccaggagatgctttacatcatg
gactggatggatgagatgaagatgctgctgctgtctcaggactatgggaaacacctgctg
ggagtggaggacctgctgcagaagcacactctggtggaggctgatattgccatccaggcc
gaccgcgtcaaagccgtcaacaacaacgctcagaagttcgccattgatgcagagggttac
aagccctgtgacccccaggtgatccgggaccgagtggcccacatggagttctgttacgca
gagctgagccagctggctgccgatcgctgcgcccgcctggaggagtcccgccgtctctgg
aagttcttctgggagatggccgaggaggagggctggatccgtgagaaagagcagatcctg
tcctcggaggactgcggtaaggatctgacgggcactgtgcgtctgctgagccagcaccgc
gccttcgaggatgagatgatcggccgcgccggccacctgcaacagaccatcaagcaggga
gaggcgctggtggccgccgaccacttcggagccgacaagatccgtgagcgcatccaagac
atccaggagcagtgggcggccttggagaggctatcttccgttaggaagacccggctggag
gaggcctgcaacctgcaccagttccaggctgacgccgacgacattgacgcgtggatgctg
gatgttctccgcattgtgtccagtgccgacgtgggccacgacgagttctccacccaggcc
ctggtcaagaagcacaaggatgtggctgaggagattgccggctaccgacctgtcatcgac
gccctgcacgagcagtccaaaaccctgcccggggaacagactggctcagaggaggtgcag
gggcgcctgtcgggcatcgaggaacgctataaggaggtggctgagctgacccggctgagg
aagcaggccctacaggatgccctggccctctacaagatgttcagcgaggcggatgcctgt
gaggtgtggatcgatgagaaggagcagtggctcaacagtatggagataccagagaaactg
gaggatctggaagtcgttcagcacaggtttgaaagtctggagccagagatgaacaaccaa
gcctcacgcgttgctgtggtgaaccagattgctaggcaactcatccacagtggtcacccc
agtgaaaaggagatcaaagcccaacaggacaaactcaacaccagatggagtcagttccgt
gacctagttgacctgaagaaagactccctcaactcagctctgggtgtacagaactaccac
ctggagtgtaacgagaccaagtcgtggatccgcgagaagaccaaggtgatcgagtccacc
caggagctgggcaatgacctggccggggtcatggccctgcagcgcaagctcaccggcatg
gagcgtgacctgaccgccatcgaggacaagctaggagaactggggaaggagggggagcac
cttgcagccgagcaccctgaccaggcccagggcatcatgggtcgcctgggggagatcaca
ggagtgtgggacgagatgaagggcaccctgaagaaccgcgaggagtccctgggcgaggcc
agcaagctgcaacagttcctccgggagctggatgacttccagtcatggctgtccaagacc
cagacggccatcgcttcagaagacatgcccaacacactgacggaggccgaaaagctgctg
gcgcagcacgagggcatcaagaacgagatccgcaactatgaagtggactaccagaagatg
agggacatgggggaaatggtgacccagggccagacggacgcccagtacatgttcctgagg
cagaggctgcaggccctggacacaggctggaacgagctgcacaagatgtgggagaaccgt
cagaacctgctgtcccagtctcatgcccaccagctgttcctcagggataccaagcaggct
gaagccttcctcaacaaccaggagtacgtgctggcccatactgagatgcccacgactctg
gagggggcagagggagccattaagaagcaggaggacttcatgaccaccatggacgccaac
gaggagaagatcaatgccgtggtggacaccggacgcagactggtcagtgacaaaaacatc
aacgctgaccgcatccaggagaaagtggactctatcgatgagagacatcagaagaaccgc
ttggcggccagtgagcttctctgtaagctgaaggataacagagacctgcagaagttcctt
caggactgccaagagctgtccctgtggatcaatgagaagatgctcaccgctcaggacatg
tcatacgacgaagccaggaacctccacagcaaatggctcaaacaccaggccttcatggcc
gagcttcagtccaacaaggagtggctggacaagatcgagaaggacgggatgcagctgata
gctgagaagccggagaccgaggccatggtgaaggaaaagctggcagcgctccataagatg
tgggatgaccttgagtccaccacccagactaaggccaagtgtctgtttgacgccaacaag
gccgagctgttcacccagagttgtgccgacctggacaagtggctggtgggagtggatgga
caaatccaatcagacgactacggcaaagatctgaccagcgtcaacatcctgctcaagaaa
caacagatgctggagagccaggtggaggtgcgtcagaaggaggtggaggagctgcagagc
caggcccaggtcctcagccaggaggggaaggacacagatgaggtggatggccagcgccgc
atcgtggagaagaagttccagcagctgctagacccactgaagaagaggaagggaaacctc
atggcctcccgcgagatccaccagttcaacagagacgtggaggacgagatcctctgggtt
gaagagagaatgccactggcaacatctacagaccacggaaacaacctgcaaacagtccag
ttacttatcaagaaaaaccagaccctgcaaaaggagatccagggccaccagccgcgctgt
gacgacatctttgagcggagtcagcaggtgctgaaggatgacgacaacagccccagcggc
gaggggatccgccagcgcctggccgacctgcggcgcctgtgggcccagatcctggaggag
acggccaaacgccatggacgcctggaggaggcccacaaggcccagcagtactactttgat
gctgccgaggctgaggcctggatgagcgagcaggagctctatatgatgtcagaggagaaa
gccaaggatgagcagagctccgtggccatgctgaagaagcaccagatcctggagcaggct
gtggaggactatgctgagactgtccaccagctctccaagaccagcaggggcctgacggcc
gccggacacccagaaagtgaacggatcggcatgcgtcagtcccaggtggataagctgtac
gcggggctcaaggacctgtcggaggagaggagggggaagttggacgagaggttccgtctt
tttcagctcaacagggaggtggatgatctggagcaatggatcgctgaaagggaggtggtg
gctgggtcacatgagctgggacaggactatgaacatgtcacgatgcttcaggagcgtttc
cgtgagtttgctcgcgacacgggcaacattggtcaagagcgtgtggacactgtcaaccag
ctggcggacgaactcatcaactcgggccacgcagacgcggctaccatcgccgagtggaag
gacgggctgaatgaggcgtgggccgacctgctggagctgattgacacacgcacgcagatc
ctggcggcgtccttcgagctgcacaagttctaccacgacgccaaggaaatcctcaaccgc
atcctggacaaacacaagaagctgcctgaggagctgggccgggaccagaacacagtggag
acactgcagaggatgcacaccacctttgaacacgacatccaagccctggggacacaggtg
aggatgttgcaggaggatgctgtgcgcctgcagtctgcctatgccggagacaaggctgat
gacatccaaaagagagagggtgaggttttggaggcctggagaacactgctggaggcctgt
gacggccgcagggtcagactgctcgacaccggcgacaagttccgtttcttcagcatggtc
cgagacctcatgctctggatggaggacgtcatccgcctcatcgaggctcaggagaagccc
agggacgtgtcgtctgtggagctcctgatgaacaaccaccagggcatcaaggctgagatc
gacgcccgtaacgacagctttaccaactgcatcgagctgggcaagtccctgttggcacga
aaacactacgcattagaggagatcaaagagaagttactacagttgacggacaagaggaaa
gacatgattgacaagtgggaggacagatgggagtggcttagattggttctggaggtgcac
cagtttggaagggacgcgggggtggccgagtcgtggctgctgggacaggagccgtacctg
tccagcagggagatgggtcagaacgtggatgaagtggagaaactcatcaagagacacgag
gcctttgagaagtcagctgccacctgggaagagcggttctctgctctggaacggctgact
acgatggaattactggaagtgagaagacagcaagaggaggaggagaggaggagaaatccc
ccacctgcagagacccagacggacactgcatcgccacagcagaaggagggtgagcaagtg
tctctgaatggactgccatcggaccaggactcccctcgggacaatggggagggaagtgac
attgtaaatggggtggcggagcccagcccaggcgggtcgcccagtgcagcacgcaagggc
aagcccagccaggctgccactctcccggccaagtccctggactcaaccccagccaaccag
atggaaggcctcctacaccgcaaacatgagtgggagggtcacaacaagaaggcatccagc
agatcctggcacaatgtgtattgtgtgatcaacaactgggaaatgggcttctacaaagac
attaagagtgccagccagggcatcccctatcacagcgagatccccatcagcctgaaggac
gctgcgtgtgagatcgccctcgattacaagaagaagaagcatgtgttcaaactgaaagct
acagatgggaatgagtatctcttccaagccaaagatgacgaggagatgaactcgtggatg
gaggccatctccagtgctgcgtcctctgataagaccgaggtgacccccagcagccatagc
acccccgcctccagccgggcccagaccttgcccgcctctgttgccctggcaaccgaatcc
agcccaggcaagcgcgagaaagacaaagaaaaacgcttcagccttttcagcaaaaagaag
tag
DBGET
integrated database retrieval system
