Oncorhynchus tshawytscha (Chinook salmon): 112255745
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Entry
112255745 CDS
T05605
Name
(RefSeq) AT-rich interactive domain-containing protein 1B-like
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112255745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112255745
03021 Transcription machinery [BR:
otw03021
]
112255745
03036 Chromosome and associated proteins [BR:
otw03036
]
112255745
Transcription factors [BR:
otw03000
]
Eukaryotic type
Helix-turn-helix
ARID
112255745
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112255745
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
112255745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
112255745
NCBI-ProteinID:
XP_042181386
LinkDB
All DBs
Position
LG08:34336614..34568368
Genome browser
AA seq
2368 aa
AA seq
DB search
MAAQVASAPTTTNNKKNKLSGSLGQEIHSGKSGGGTISRSGAMLGAGDGTNTMNNVDHHH
QNELNMVNSTSPNNNSDTREKESGNNITSSNSTTSLEGMETGLIANHKQNNVSGDPPQHL
TPPQQQSQFNPFPQHQQRQIQSNNINNSEATRGESENQHHGGKRGVLASQTEQQMLSKGE
GDHTCKPGERMGARYEHANLGPTTDISSQPQSAGGNSAISEFNNYYGTSRVGACYDQHGG
QNTGMGMMPSSGPNNMDPVHNSHEGYHNSQYNHYPGYRQGYGGAGYGMMAPSRQGSNMLI
GPGSNAPASHVKAAMGAASSGSGGSVGGFQRFPGHTQHPSGATPTLNQLLTSPSPMMRGY
GSGYHQDYNSPSAQQQAGIGLGKDMTSQYGSTTHGWPGQQRNHPSMSPGNGGQGISRPQV
ASVDFMAMKRSHLYGMGNNPYSQQQQGGPYPSQPYGSPATHRYPMGMQGRGQAGMGGMQY
PQQQQVPPQYGQQGMGGYSQQQQGTPPGSYFSPPQQNPTAPTQPPTCLPRPTPAGKTSLT
VREGQHVPGNSGKANLEDMGLIPQDRPSSLPDLSGAIDDLPTGTDAGHSSAISATGSTSS
QGEQSNPSQSPFSPHASPHLSGRGSGPSPSPVGSPVGSNQSRSGSGPISPVSGPTTAQGS
QMAPQIPVNTSDVPHSPLTQSPMPQERGFMSNMQRNQCGSQFATPPPQSGPSMSPHPSPG
PGPGGQMYPGMGPRPYLQGGSSGPYGPQGSQANQYGPQGNYPRPPNYGGTPSANYSGPGP
GMTNSLGMNASSPMHGQGPGQPMPMGRSLGAGSRPYPNMAPSSPSMPQPAGPGMGPPSLG
NVNRKAQEAAASIMQAAVNSVQSSRPPYVRSPALHTSSGPSPLPPLPTTPTPPPPLQPPH
PNYNTPHSQQHGQGSYPGPGINQIVPPINQSQGNNSGMGTPQGPPYNMPPSGPIGMAGDG
MVTPVGKQKMDGKEESMPTNEPPRPKDGYSGSQCVSQPTTPGAMPVPSPLSPSPASLSSY
HGDDSDSISSPVWPKTPSSPKPNSSTMTNEQITRLYDMGGEPERRGWVDRYLSFMEERGT
PVPHLPAVGKKPLDLYRLYMVVKEIGGLAMVNKNKKWRELSTSLSVGTSSSSASSLKKQY
IQYLFAYECKVERGEDQPADSNTGTGGDNRKQAKLQPPSPANSGSLQGPQTPQSSGSSSM
AEMSGDLKPPTPASTPQGQVTPIPASRNSVVSVQDPFSEVSDPVFQKRSSLPPGGPGGPY
QQGVNMPPDVMMRMQYEKDPFAGMRKVAGGDSYMPGQMPSGGMQEMYGRPPSGMGQRSQY
PYGPGYDRRPDHVIGMEGSMGTPGSQSNMGPSNSEGSIYSPNRYPSQLRHEGYGQQYPGM
SYGMHHSGMYPQQQGYKRPMEGMYGPPGKRHEGEMYGPPGKRQEGEMYGPPGKRHEGEMY
GPPGKRHEGEMYTMQYGSQQPDMYNQYSTGYSGPERRPMQGQFPYPSPYSRERMQASGQG
QHPQQPMGPQMMAGGPPSNNGVEGPQGPNMWPSRTDMGYPYSNRQGAPSQVPSYGPLGRG
EDMEGRPIQDGQWLGHGGHRQSSYMSGGMTPMSSRQPPSAYQTSPSMANHLPRAPSPGSF
QRSMEARMSPNKAAYMGSMKMPCKPGMPMPGQVSGHPGQVPPNLRRDLNYPLGSVEATMP
LLKPRRKITSKDTGTPEAWRVMMSLKSGLLGESTWALDTVNILLYDDSTVASFTLAQLPG
FLELIVEYFRRCVMEIFGILEEYEIGTIGQKTLLGPEACNQGEALTSEPEMDCEASQPEP
ESEQEVERGEVEKGEVENGEDKPADITEKITVELMSPPSTTVPAPEGTKEESEAEVKVKK
EEGEKEQEGEKGKEEGEKPTESKKVPAESKEDYPNQSEPRPQQASKYDKFPIKILHKEDL
IEDMTEQLAHVTEFTSGLLHWQVGGGDSTAHIQTHFEGRGEQPDRTEGERDECAILNKEQ
ETDSRTEEKGNRITATIDDILCARLEALSEGHPTHSAPTYPFRLHQGGGHKHITLLEDEP
RCLNEAPLSAASPWQDSLAKRCLCVSNILRSLSFIPGNDSDMSRHPGLVLILGRLLLLHH
QHPERKRTSPSYQREEVQERGLACSKDEWWWDCLTVLREDTLVTLANISGQLDLSLYPET
ICLPILDGLLHWMVCPSAEAQDPFPSAAPHSPLTPQRLVLECLCKLSIQDNNVDLLLAMP
PFSRQEKLYATLVRYVGQRKNQVYREMAVATLSNLAQGDSTSARAIAVQKSSVGNLMGFL
EDGVSMAQYQQNPHSLLHMAHHPPMEPPSVNMMCRAAKALLAMAKVEENRPEFVLYEGRL
LDISISSVLNPGVASIVCEVLFQFVKKL
NT seq
7107 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgcaagtggcatcagcaccgacgacaactaataacaagaaaaataaattgtct
ggcagtttggggcaagagatacattcggggaaatcgggaggaggaactatatcgagatct
ggagcaatgcttggagctggagatgggactaacacaatgaataatgtagaccatcaccac
caaaacgagctcaacatggtcaattcaacttctccgaataacaattctgacacacgggag
aaggagagtggaaataacataacatcgtcaaattcgacgacctctctggagggaatggag
acgggtttgatagcaaaccataaacagaacaatgtgagtggagatccccctcagcacctc
acgccgccgcaacagcagtcacaatttaacccgtttcctcagcatcagcagcgccagata
caaagtaacaacatcaacaacagcgaagcgacaaggggagagagtgagaatcagcaccac
ggagggaagaggggtgttttggcgagccagacagagcagcagatgctgagtaaaggtgaa
ggggatcatacctgtaaaccaggggagcgaatgggtgccaggtatgaacatgccaacttg
ggaccaacgaccgacatcagcagccagccccagagcgcaggagggaacagcgctatttca
gagtttaataactactatggcacttccagagtaggggcctgctatgatcaacatggcgga
caaaacactgggatggggatgatgccctcctcgggacccaacaacatggacccagtgcac
aactcccacgaaggataccacaacagccagtacaaccactaccctggctaccggcagggc
tacggtggagcgggctacggtatgatggccccgtccagacagggcagtaacatgctgatt
ggccctggcagcaacgctccagctagccatgtcaaggctgctatgggagctgcttcctcc
ggttctggtggaagtgttgggggctttcagagattcccaggacatactcagcatccctcg
ggagccaccccaactctaaaccaactgctgacgtctccaagtccaatgatgcgaggttat
ggcagtggctatcatcaagactataacagtccctctgcacaacaacaagctggcatcggc
ttaggcaaagacatgacttctcagtatggctccacaacccatggctggccagggcaacag
agaaatcacccgtccatgagtcctggaaacggagggcaaggtatcagcagaccacaggtg
gcttccgtggacttcatggctatgaagcgctcccatctctacgggatgggcaacaacccc
tactctcagcagcagcagggcgggccctaccccagccagccatacggatcgcccgctaca
catagatacccaatgggaatgcaggggaggggccaggcgggcatgggcggcatgcagtac
cctcaacagcagcaggttcccccccagtacggccagcagggtatgggaggatacagccag
cagcagcagggaacacctccgggatcctacttcagccccccccagcagaaccccaccgcc
cccacacaaccccctacctgcctcccgcgccccaccccagcaggtaagacctcacttaca
gtcagagaggggcagcatgtcccagggaattctgggaaggccaaccttgaggacatgggt
ctgatcccgcaggaccgcccttccagcctcccggacctgtctggtgccatagacgacctc
cctacagggacggacgctggtcacagttcagccatcagtgctacaggctccaccagtagc
cagggggagcagagtaacccgtcccagtcacccttctcaccccacgcatcaccccacctg
tctggccgaggcagcggcccatcgccctctcctgttggctcccccgtgggctccaaccaa
tcacgctccggctctggcccaatctccccagttagcggcccaaccacagcacaagggtcc
cagatggccccccagatccccgtcaacacgtcggatgtccctcactcccccttgacgcag
tcccccatgcctcaggagaggggctttatgtctaacatgcagagaaaccagtgtggttcc
cagtttgcaacaccaccacctcagtcggggccttccatgtcccctcacccctctcctggt
cctggtcctggaggacaaatgtacccagggatggggcccaggccctacctccagggtggc
tccagtggcccctacggaccccagggatcccaggcaaaccagtatggaccccaaggtaac
tacccacgtccacccaactacggtgggacccccagtgccaactacagcggtcccggccct
ggcatgaccaacagcctgggtatgaatgccagcagccccatgcacggccagggtcccggg
cagcccatgcccatgggccgcagtcttggcgcgggcagccgaccctaccccaacatggcc
cccagctcccccagtatgccccagccggcaggcccaggcatgggccctccttcactgggc
aacgtcaaccgcaaggcccaggaggcagccgcttccattatgcaggccgcagtcaactct
gtacagagcagtagacctccctatgtgaggtccccagccctccacacctcttctggaccc
agtcccctgccccctctccccaccacacccacccctcctcctcctctccagcctccacac
cccaactacaacacccctcattctcagcaacacggacagggcagctacccaggccctggc
ataaaccagattgtgccccccatcaaccagtcacagggcaacaactcaggcatgggcacg
ccacagggtccaccctacaatatgccaccctcagggcccatcgggatggctggggatggg
atggtgactcctgttgggaagcagaaaatggatggcaaggaggagagcatgcccaccaat
gaacctcccagacccaaggatggctacagtggatcccagtgtgtctcccagcccaccacc
cctggtgccatgcctgtcccctctcccctgtcccccagcccagccagcctgtcctcctac
catggggatgacagtgacagcatcagcagccccgtctggccaaagactccctccagccct
aagcccaactcgtccaccatgactaacgagcaaatcacacgtctgtatgatatgggtggg
gagccggagaggcgtggctgggtggaccgttacctgtcctttatggaggagaggggtaca
cctgttccccacctccctgcagtgggcaagaagcccctggacctctacagactgtacatg
gtggtcaaggagatagggggcctggccatggtgaacaagaacaagaagtggcgagagcta
tccactagtctgagtgttggtacctccagtagctccgccagctctctgaagaagcagtac
atccagtacctgtttgcctatgagtgtaaggtggagcggggagaggaccagccggccgac
agcaacactgggactgggggagacaacaggaagcaggccaagttgcagccgccctctcct
gctaactcagggtccctgcagggcccccagaccccccagtcgtcaggcagcagctccatg
gcagagatgtcaggtgacctgaaaccccccaccccagcctcaaccccccagggccaggtc
acccccatcccagccagcaggaacagtgtggtcagtgtgcaggacccgttctctgaggtg
agcgacccggtcttccagaagcgtagctccctccccccggggggccctgggggaccgtac
cagcagggggtcaacatgccccctgacgtgatgatgaggatgcagtacgagaaggacccc
ttcgctggcatgaggaaggtggcaggaggggattcctacatgccaggccagatgcccagt
ggtggcatgcaggagatgtatggcaggcctccatcaggcatgggccagcgttcccagtac
ccatacggaccaggctacgacaggagaccagaccatgtgatagggatggaggggagcatg
ggcacccccgggagccagagcaacatgggaccttccaacagcgagggcagcatatactct
cccaacagatacccctcccagcttagacatgagggttacgggcagcagtaccctggcatg
tcatatggaatgcaccactcagggatgtacccacaacaacagggttacaagcgccccatg
gagggcatgtacggccccccaggcaagaggcacgagggggagatgtacggccccccaggc
aagaggcaggagggggagatgtacggccccccaggcaagaggcacgagggggagatgtac
ggccccccaggcaagaggcacgagggggagatgtataccatgcagtacggcagccagcag
cctgacatgtacaaccagtacagcactggttattctggtcctgagaggaggcccatgcag
ggccagttcccttacccctccccctacagccgagagcgcatgcaggcctctggccagggg
cagcacccccagcaacccatgggtccccagatgatggccggggggccaccctccaacaac
ggagtggaaggaccccaggggcccaacatgtggccctccaggacagacatgggttatccc
tactctaacagacagggggcaccctcccaggtaccgtcatacggtcctttggggagagga
gaggatatggagggccgacccatccaagatggtcagtggctcgggcatggaggccatcgc
cagtcctcctacatgtcaggtggtatgacacctatgtcctctcgccagcccccctctgcc
taccagacctccccctccatggccaaccacctgccccgagcacccagccccggctccttc
cagcgctccatggaggcacggatgtcccccaacaaagctgcctatatgggctccatgaag
atgccatgcaaaccgggcatgcccatgccagggcaggttagtgggcacccaggccaggtc
ccacctaacctgcggagagacctcaactaccctctaggatctgtagaggccaccatgccc
cttctcaagccccgccgcaaaattacctcaaaggacactggaaccccagaggcgtggcga
gtgatgatgtctctgaagtcaggtctgctgggtgagagtacctgggccctggacaccgtc
aacatcctgctgtatgatgacagcactgtggcctccttcaccctcgcacagttgcctggc
ttcctggagctgatagtggagtacttcagacgctgtgtgatggagatctttggcatcctg
gaggagtatgagatagggaccatcggccagaagaccctcctggggcctgaagcctgtaac
cagggggaggcgctgacctctgaacctgagatggactgtgaggccagccaacccgagcct
gagtctgaacaggaggtggagaggggggaggtagagaagggggaagtagaaaatggggag
gacaaacctgctgacatcacagagaaaattacagtggaactgatgtcaccccccagtaca
acggtaccagcccctgagggaacgaaggaggaatctgaagccgaagtgaaggtaaagaag
gaagagggggagaaagaacaggagggagagaaagggaaagaggaaggagaaaagcccaca
gagagtaagaaagtcccagctgaaagtaaggaagactatcctaatcagtcagagccaagg
ccacaacaggccagcaagtacgacaagtttcccattaagatcctgcacaaagaggacctg
attgaggacatgacggagcagctggctcacgtgacagagttcactagtggactgctccac
tggcaggtaggcgggggggattccacggcccacatccagacccactttgagggcagggga
gagcagcctgacaggacggagggagagagagatgaatgtgctattctgaataaagaacag
gagactgactcgaggacagaggagaaggggaatcgtatcaccgccaccatcgatgacata
ctgtgtgcccggctcgaggctctgtcagagggccaccccacccattctgctcccacctac
ccattcaggctgcaccagggtgggggccacaagcacatcaccctgctggaggacgagccc
cgctgtttgaacgaggctcccctctcagcagcttctccttggcaggactccctggccaag
cgctgcctctgtgtgtccaacatcctccgcagcctctccttcatccctgggaacgactca
gacatgtcccgtcacccaggcctggtactgatcctgggcagactgctgctgctccaccac
cagcacccagagaggaagaggacatcccctagctaccagagagaggaggtgcaggagcgg
ggcctggcctgcagtaaggatgagtggtggtgggactgtctcactgtactcagggaggac
accttggtcaccctggctaacatctctggccagctggacctttccctctacccagagacc
atctgcctgcccatcctggatggcctactccactggatggtgtgtccctctgccgaggcc
caggaccccttcccctcggccgccccccactcccccctaaccccccagagactggtgctg
gagtgcctgtgcaagctgagcatccaggacaacaacgtggacctgctgctggccatgcca
ccgttcagccgccaggagaagctgtatgccaccttggtgcgctacgtgggtcagcgtaag
aaccaggtttaccgcgagatggctgtggccaccctctccaacctggcacagggggactcc
acgtcggcacgcgccatcgcagtacagaaaagcagcgtgggtaacctgatgggcttcctg
gaggatggggtgagcatggcccagtaccagcagaacccccacagcctgctgcacatggcc
caccacccccccatggagccccccagtgttaacatgatgtgtcgggctgcaaaggctctg
ctggctatggccaaggtagaggagaacaggccagagtttgtcttgtatgagggcagactc
ctggacatctccatctcctctgtgctcaacccgggggtagccagcattgtatgtgaagta
ctctttcagtttgttaaaaaattatga
DBGET
integrated database retrieval system
