Oncorhynchus tshawytscha (Chinook salmon): 112255779
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Entry
112255779 CDS
T05605
Name
(RefSeq) neuronal PAS domain-containing protein 3-like
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112255779
Transcription factors [BR:
otw03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
112255779
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS
PAS_11
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
112255779
NCBI-ProteinID:
XP_042182186
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All DBs
Position
LG08:complement(18247388..18561790)
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AA seq
954 aa
AA seq
DB search
MIACLQIFTLFLHSDPYWERPANASSCSVSRPKTLHLGGGQQHTSSPWLQALRKEKSRDA
ARSRRGKENFEFYELAKMLPLPGAITSQLDKASIIRLTISYLKMRDFANQGDPPWNLRME
GPPPNTSVKAIGDQRRRTPSVVASEIFEPHLGSHILQSLDGFVFTLNKEGRFLYISETVS
IYLGLSQVELTGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLLSQGTATEDGTSSASSSSH
AETPEPVESTSPTLLPPDNILERSFFVRMKSTLTKRGVHIKSSGYKVIHVTGRLRIRMAL
THSRSVPIQIMGMVVVAHALPPPTINEVRIDCQMFVTRVHMDLNIVYCENRISDYMDLTP
VDIVGKRCYQFIHAEDVEGIRHSHLDLINKGQCVTKYYRWIQKNGGYIWIQSSATIAINA
KNGNEKNIIWVNYVLSNPEYKDTPMDIAQLPNLPEKASESSETSDSESESKDNSDDNENS
KWDRKGNQTENTEDPETDSKKQQQGQSSSEQEMRRQEEGDSSSNPESQESEDDLEPSDCE
VETKEGRLGRLEDLHIKVEHYGDGNGGVELHASPSSSEEEEDDDDDEEDDDSFKACDSAT
ETLATPAASKQQKRKKRRKKQKWDGSRPKRMCLSSATPSSNTFVGAVPLLPTPSPASASV
LKIKTEMSEPINFDNDSIIWNYPPNREISRNESPYSMTKPVPAHDTFPSPQPGSLQVSIP
DSVLTPPGTEGGSGGAGTRKGVPPSFSGYSSAPSSASSATSLAPPSGSGSSSDPLSPPLS
ASPRDNQQCQSTPTTSGSSLLYTSDLEALQRLQAGNVALPLVQRVTGTLATTSTAASRVY
TTGTIRYAPADVTLAMQAGANLLPNNVAHAMNFVDVNGSPSFGIDPKTPMEMLYHHVHRL
NMAGPFGGTMSGASLTQMPAANVFTTAEGLFSTLPFPVYSNGIHTTQTLERKED
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgattgcatgcttgcagattttcacgttgtttctccacagcgacccttactgggagagg
cctgctaatgccagctcctgttctgtctctaggcccaagacactccaccttggaggaggg
caacaacatacctcatcgccatggttgcaggctctgaggaaggagaagtcccgggatgca
gctcgctcgcggcgggggaaggagaactttgagttctacgagctggctaagatgctgccc
ctgcctggcgccatcaccagccagctggacaaggcttccatcatccgcctcaccatcagc
tacctgaagatgagggacttcgccaaccagggggacccaccatggaacctgcgcatggaa
ggcccaccgcccaacacctcggtcaaagctataggagatcagcgaaggaggactcccagt
gtggtagcctcagagatcttcgagccacacctcgggagccacatattgcagtccctggat
ggatttgtatttacactaaacaaggagggaaggtttttgtacatctctgagacggtgtct
atatacctggggctttcacaggtggagctgacaggaagtagtgtgtttgactacgtccac
cctggcgatcatgtggagatggcagagcagctgggcatgaagctgcccccggggcgaggc
ctcctttctcagggcaccgccaccgaggacggcaccagctctgcctcctcctcctcacac
gcagagacccccgagccagtcgagtcgaccagccccaccctgcttcccccagacaacatt
ctagaacgctccttctttgtccgtatgaagtccacactgaccaagagaggtgtccacatc
aagtcttcaggctataaggtgatccatgttacaggcaggctgaggatccgtatggcattg
acccacagtcggtcggtacccattcagatcatgggcatggtggtggtagcccacgccctc
cccccccccaccatcaacgaggtgcgcatagactgccagatgtttgtcaccagggtccac
atggacctcaacattgtctactgtgagaatagaattagcgactacatggacctgacgcca
gtggacatcgtagggaagaggtgctaccagtttattcacgcagaggatgtggagggcatc
cggcacagccatttagacttgataaacaagggccagtgtgtgaccaagtactaccgctgg
atccagaagaacggtgggtacatctggatccagtccagtgccaccatcgccatcaatgcc
aagaatggcaatgaaaagaacatcatctgggtcaactacgtactcagtaatccagagtac
aaggacacacccatggacatcgcccagctacccaaccttccagagaaagcctcagagtct
tcagagacatccgactctgagtccgagtccaaggacaactctgacgacaacgagaactcc
aagtgggacaggaaggggaaccagactgagaacacagaggacccggaaacagacagtaaa
aagcagcagcagggccagtcgtcctcagagcaggagatgaggcgtcaggaggagggagac
agctcctccaacccagagagccaggagagcgaggacgatctggagcccagcgactgtgag
gtggagaccaaggagggcagactgggccggctggaggacctgcacatcaaggtggagcac
tacggagatggaaacggaggggtggagctgcacgcctcaccttcctcctctgaagaagag
gaagatgatgatgacgatgaggaagatgacgacagctttaaagcctgtgacagcgccacc
gagactctcgccacccccgctgccagtaagcagcagaagcgtaagaagaggaggaaaaag
cagaaatgggacggtagtcgtcctaaacgtatgtgcctctcctctgccacccccagctct
aacacctttgttggggctgtccccctcctgccgaccccctcccctgccagtgcctctgtg
ctcaagatcaaaacggaaatgtcagagcccatcaactttgacaatgacagcatcatctgg
aactacccacccaacagagagatctccaggaacgagtctccctacagcatgacgaagccc
gtcccagcccacgataccttcccgtccccacagcctggtagtctgcaggtctccatccca
gactcagtgctcactcccccaggaacagaggggggcagtgggggcgcaggtaccaggaag
ggcgtacccccctccttcagcggttatagcagcgccccctcctcggcctccagcgccacc
agcctggcccctccctctggctctgggtcctcctccgaccccctgtccccgcccctctcg
gcctcgccgcgcgacaaccagcaatgtcagagcacccccaccacttccggctcctccctg
ctgtacaccagcgacctggaggccctgcagaggctgcaggccgggaacgtggcgcttcca
ctggtccaacgggtcaccggcaccctcgccacgaccagcactgctgcctcacgggtctac
accactggcaccatccgctacgcccccgccgacgtcactctggccatgcaggcaggcgcc
aacctgctgcccaacaatgtggcccacgctatgaactttgtggatgtcaacggtagcccc
agctttggcatcgaccccaagacacccatggagatgctgtatcatcatgtccaccggctc
aacatggctggcccttttgggggtaccatgtccggcgccagtctcacccagatgccagca
gccaatgtattcaccacggcagagggactgttctctactcttccattccctgtctacagt
aacgggatacacaccacacaaactctggagcgcaaagaagattag
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