Oncorhynchus tshawytscha (Chinook salmon): 112255785
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Entry
112255785 CDS
T05605
Name
(RefSeq) endoribonuclease Dicer-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112255785
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
112255785
microRNA pathway
RISC loading complex
112255785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Dicer_PBD
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
Helicase_C
DEAD
ResIII
Cas3-like_C_2
DSRM_2
Motif
Other DBs
NCBI-GeneID:
112255785
NCBI-ProteinID:
XP_042182185
LinkDB
All DBs
Position
LG08:15231169..15297416
Genome browser
AA seq
2165 aa
AA seq
DB search
MAGLQLVTPASNPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALEHNTIVCLNTGSGK
TFIAVLLTKELSHQIRGDLVEQGKRTVFLVNAASSVIQQAASVRTHSDLQVGEYMCVEKT
SLWSREKWSQEMIENQVLVMTCHIFLHVLKSGVLPLWKLNLVVFDECHLAITDHPYREIM
KLCEGCPCSPRILGLTASILNGKCDPSELEQKIQNLERILRSNAETATDLVVLDRYASQP
REVVLDCGPYLDKSGLSEHLLSELDEALHFLNDCNIPVPREDRDPTFISKQVLSDCRAVL
LVLGPWCADKVAGIMVRELQKYIKHEQEEINRKFLLFTDTILRKVHALCEELFSPASLDL
KFVTPKVIRLLEILHEYKPFERQQFESVEWYNNRNEDNYVSWSDSEDEDEDEEVEVKEKP
EANFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPR
NKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSK
GRARAPVSNYIMLAESERTKTFEEDLKTYKAIEKILRNKCSKAAGVGDFEVEPVQDDDNI
LPPYVLRSEEGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTKELKDGRYQSTLYLP
INSPLRVPVAGPIMNCARLAEKAVALLCCENLHKKGELDDHLMPVGKETVKYEEELDLHD
EEETSVPGRPGSTKRRQCYPKAIPECLRDSYPVPEQSYYLYVIGMVLTTPLPDELNFRRR
KLYPPEDTTRCFGILTAKPIPRIPHFPVYTRSGEVTISMELQKAGFTLSAVQLDLITRLH
QYIFSHILRLEKPALEFNPTQADSAYCVLPLNVVEDSNTLDLDFKFMEDIEKSEARVGIP
TTQYTKQNPFTFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSRFPSPEYQTFAE
YYKTKYNLDLSNVNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNK
QILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGAQTLPSDFR
YPNLDFGWKKSIDSKSFICLRDEDEEEEEEEEDSGDDNCKQQGQTVAPGLAAAVSQQPCS
DCHVSSRPEGCDIHQRPEDDRPEDEEPQQPDSASCTSILANGTAPIANDNGDHGDHSHLH
DGRDNCQCLPAGSGLPLENEKEVSTTQTTTSVLPVQPSLSIENQNLTPTPPQPQPGTQPP
PPHPQAGTQPPTPQPGTQPPPPPPSQPQPGTQPLPPQPQPGTQPPPLSPGPILQLLHPLS
PSQGPSLYTLSPSQGPNLHPPAPARDPTSTPSAPAPACTPQPQPGTLPAPPQPQPGTQTP
PLSPSQGPNLHPLSPSHPSQGPSFHPPAPARDPASTPQPQPGTQLPPPSPSQGPSFHPQP
QPGTQLPPPQPQPSDECRPGGTSELREGDGHHVNQATSDCCSPATMTGPAGTAPITTTPL
PDPPETQEITTSSSVVGDTLGPCSKTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFL
KHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPCRMVVSIFDPPVNWLPP
GYVVNQDKSSEDKWDEDEAKEELLANGSAGEELCVEELGEEVLEEDEDLMWKEPKDEVNV
EDDLEYYQEHIKFIDNMLIGSGAFGKKISLGTFPPAPATPGPSPSPSARSSSPAAEPSYG
EWKPPKKPGPVPTPHYPSEPSGSGSADEFDYSSWDAMCYLDPSKAGEEDDFVVGFWNPSE
ENCGAELGKQSISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQMFLCSLGLKVLP
VERRRLKEKDGVIEVVNLDLQYGWLKIPPRCIFDHPDAELTLNHLISGFENFERKISYTF
QNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRS
ALVNNTIFASLAVQYDFHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEA
KEEDIEVPKAMGDIFESLAGAIYMDSRMSLETVWQVYYPMMRPLIEKFSANVPRSPVREL
LEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQP
QVPNN
NT seq
6498 nt
NT seq
+upstream
nt +downstream
nt
atggcaggactccagctggtcacccccgcctccaatcccatggggcctttctttggtctc
ccgtggcaacaggaggccatccacgacaacatctacacgcctaggaaatatcaggttgaa
cttcttgaagcagctcttgaacacaatactattgtctgcttaaatactggctcagggaag
acttttattgcagtgctcctaactaaagagctctcccaccaaatccggggagatttagtc
gaacaggggaagaggacagttttcctggtgaatgcagcatcgtctgtgattcagcaagca
gctagtgttaggacccactctgatctccaggttggagaatacatgtgtgtggagaagacc
tcattatggtccagggaaaagtggagccaagaaatgattgaaaatcaggtgctcgttatg
acgtgccatatcttcctgcatgtgctgaagagtggagtgctgccactatggaaactcaac
ctggtggtgtttgatgagtgtcacctggcaatcacggaccatccctaccgggagataatg
aagctatgtgagggctgtccgtgcagccctcggatcctgggtctcactgcatcaattttg
aatggtaaatgtgacccgtctgaactggaacagaagatccagaacttggagcggatcctg
cggagcaatgcagagacagctactgaccttgttgtccttgacagatatgcctcccagccc
agagaggtggtactggactgtggaccctacctggacaagagcggcctttcagagcatcta
ctgagcgagctggacgaggctctccacttcctcaacgactgcaacatacctgtgcctcga
gaggacagagaccccaccttcatatccaaacaggtgctgagtgactgtcgggcggtgctg
ttggtgctggggccgtggtgtgccgacaaggtggctggcatcatggtgagggagctgcag
aagtacatcaaacacgaacaggaagagatcaacaggaagttcctgctcttcaccgacacc
atcctgaggaaggtccacgccctgtgtgaggaactcttctccccggcctctctggacctg
aagtttgtgaccccgaaggtcatccgtctcctggagatcctccatgagtacaagcccttt
gagaggcaacagtttgagagtgtggagtggtacaacaaccgcaacgaggacaactacgtg
tcgtggagtgactcggaagacgaagacgaggatgaggaggtggaggtgaaggagaaaccc
gaggctaacttcccctcgccgttcaccaacatcctgtgtgggatcatcttcgtagagagg
cgctacacggccgtcgtcctcaaccggctaataaaggaggcagggaaacaggacccggag
ctggcctacatcagcagtaacttcatcacgggacacagcatcggaaagaaccagccacgc
aacaagcagatggaagtggagttcaggaaacaggaagaggttctgcgtaagttccgtgcc
cacgagaccaacctgctcatagcgaccagcatcgtggaggaaggggtagatattcccaag
tgtaacctggtggtgaggtttgacctgcccactgagtacaggtcctacgttcagtctaaa
ggccgagccagagcccctgtctccaactacatcatgctggctgaaagtgagaggaccaag
accttcgaggaagacctgaagacctacaaggccatagagaagatcctgagaaacaagtgt
tccaaggcagcgggggtcggcgactttgaggtggaaccggtgcaggatgatgacaacatc
ctgcctccctacgtgctccgctctgaggaaggagggccccgcgtcaccatcaacacggct
atcggacacatcaacagatactgtgcccgtctgcccagtgacccgtttacccacctggct
cctaagtgtaagaccaaggagctgaaggatgggcgctaccagtcaaccctctacttgccc
atcaattcccctctacgggtgcccgtcgctgggccaatcatgaactgtgcacgactggca
gagaaggcagtggcactactttgttgtgaaaatcttcacaaaaaaggtgagttggatgac
cacttgatgcctgtggggaaagagactgtgaagtatgaggaggagctggatctccatgac
gaggaggagaccagtgttccaggcagaccaggatccaccaagaggaggcagtgctaccct
aaagctataccagagtgtcttcgggacagttaccctgtaccggagcagtcttactacctg
tatgtgattggcatggtcctcaccacccctctgcctgacgaactcaacttccgccgcagg
aagctctaccctccagaagacactaccaggtgcttcggcatcctgactgccaaacctata
cctcggatcccccactttcctgtgtacacgcggtctggtgaggtgaccatctccatggag
cttcagaaggctgggttcactctgagtgctgtccagctggacctgatcaccagactacac
cagtacatcttctctcacatcctccgcctggagaaacctgctttagagttcaatcccacg
caggccgactcggcctactgcgttctacctctcaatgttgttgaggattccaacactcta
gatttggattttaaattcatggaggacatagagaagtccgaggctcgtgttggcattcct
accacccagtacaccaagcagaaccccttcaccttcaaactggaagactaccaggatgct
gtcatcattccacggtatcgtaactttgaccagcctcaccgtttctacgtggctgacgtt
tacacagacctcacacctctcagcaggttcccgtcaccggagtaccagacgtttgctgag
tactacaaaaccaagtacaacctggacctgtccaacgtaaaccagccactactggacgta
gaccatacctcctcacgcctgaacctgttaacccctcgtcacctgaaccagaaggggaaa
gccctgcccctcagcagtgcagagaagaggaaggccaagtgggagagtctacagaacaaa
cagatcctggtcccagagctgtgtgccatccaccccatcccagcctctctgtggaggaag
gctgtgtgtctccccagtatcctgtatcgccttcactgcctgctcacagccgaggagctg
agggcccagacagccagcgacgctggagtaggagcccagaccctgccctctgacttcagg
tatccaaacctggactttggatggaagaagtccatcgacagcaagtcattcatctgtctg
cgtgatgaggatgaggaagaggaggaggaggaagaggacagcggtgacgataactgtaaa
cagcagggccagactgtagcccctggacttgctgctgctgtttcccagcaaccctgtagt
gactgtcatgtctcttctcggcctgaggggtgcgacatccaccaacgtcccgaagatgac
agaccagaggacgaggagccccagcagccagactccgcctcctgcactagcatcctcgct
aacggcactgcccctattgccaatgacaacggtgaccacggcgaccattcacaccttcac
gacggacgtgacaactgccaatgtctcccggctggttctggtttgccactggagaatgaa
aaagaagtatcaacaacacaaaccactacctcagttcttcctgtgcagccctctcttagc
atcgagaaccagaatctaaccccaacaccccctcagccccagccagggacccagcctcca
ccccctcacccccaggcagggacccagcctccaacccctcagcccgggacccagcctcca
cctcctccaccctctcagccccagccagggacccagcctctaccccctcagccccagcca
ggtacccagcctccacccctcagcccgggacccatcctccagctcctccaccctctcagc
cccagccagggacccagcctctataccctcagccccagccagggacccaacctccacccc
ccagccccagccagggacccgacctccaccccctcagccccagccccagcctgcacccct
cagccccagccagggaccctgcctgcaccccctcagccccagccagggacccaaactcct
cccctcagccccagccagggacccaacctccaccccctcagccccagccaccccagccag
ggacccagcttccaccccccagccccagccagggacccagcttccaccccccagccccag
ccagggacccagcttccaccccccagccccagccagggacccagcttccacccccagccc
cagccagggacccagcttccacccccccagccccagcctagcgatgaatgtagaccaggg
gggacctcagagctccgtgagggcgacggacaccacgtgaatcaagctacctcagactgc
tgcagcccagcaacgatgacggggcccgccggcacagctcccatcaccacaacaccttta
cctgaccccccggagacccaggagatcaccaccagcagctctgtagtgggggataccctt
ggcccctgctccaagaccctggggcccaaccctgggctcatccttcaggccctgaccctg
tccaacgccagtgacggcttcaacctggagcgtctggagatgctgggagactccttcctg
aagcacgccatcaccacctacctgttctgtacctaccccgatgcacacgagggacgactc
tcctacatgaggagcaagaaggtgagcaactgtaacctgtatcgtctgggaaagaagaaa
ggtcttccttgcaggatggtggtgtccatctttgacccaccggtcaactggctgcctcct
ggctacgtggtcaatcaggacaagagcagcgaagacaaatgggacgaggatgaggccaaa
gaggagctcctggccaacggtagtgctggagaggagttgtgtgtggaggaactaggggag
gaggttctggaggaggatgaagatctgatgtggaaggagcctaaagacgaggtcaacgtg
gaggatgacctggagtactaccaggagcacatcaagttcatcgacaacatgctcattggc
tccggtgccttcggcaagaagatttccctcggtaccttcccccctgcccccgccacccct
ggcccaagtcctagtccctctgcccgttcctcctcccctgcagccgagcccagctacggg
gagtggaaaccccccaagaaacctggcccggtccccaccccccactacccctcagagcct
agcggtagtggctcagcagatgagtttgactacagctcgtgggatgccatgtgttacctg
gaccctagcaaggcaggggaggaggatgatttcgtggtgggtttctggaacccgtcggag
gagaactgtggggcggagttggggaaacagtctatctcctatgacctgcacacagagcaa
tgcatcgctgacaagagcatcgctgactgtgtggaggcattgctgggctgctacctcacc
agctgtggggagagggctgctcagatgttcctctgctcactgggactcaaggtgttaccg
gttgagaggaggaggctgaaggagaaggacggggtcatagaggtcgtgaaccttgacctc
cagtatggctggctgaagatcccaccccgctgcatatttgaccacccggacgccgagctc
accctcaaccacctcatctctggctttgagaactttgagaggaagatcagctacaccttc
cagaacaaggcctacctgctgcaagccttcacacacgcctcctaccattacaacaccatt
actgattgttaccagcgactagagtttcttggcgatgcaattttagactacctcataacg
aagcacctttatgaagacccgcgccaacactctcctggcgtgctcacagacctgcgctcg
gcgttggtcaacaacactatcttcgcctccctggccgtccagtacgacttccacaagtac
ttcaaggctgtgtcgcccgagctgtttcatgtcatcgacgactttgtgcaattccagctg
gagaagaacgaaatgcaaggcatggactctgagcttcggcgctcagaggaagacgaggcg
aaagaagaggacattgaggtccccaaggcaatgggagacatatttgagtcactagccgga
gcaatttacatggatagcagaatgtcactggagacagtgtggcaagtgtattatccaatg
atgaggccacttatagagaaattctcggctaatgtccctcgctctccggtgcgggagcta
ttggagatggagcctgagacagccaagttcagccctgcggagcggacgtacgacgggaag
gtccgtgtgacagtggaggtcgtgggcaagggcaagttcaaaggcgtgggccgcagctac
cggatcgccaagtctgctgccgcgcgccgggccctgcgcagcctcaaagccaaccaacct
caggtcccaaacaactga
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integrated database retrieval system
