Oncorhynchus tshawytscha (Chinook salmon): 112255799
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Entry
112255799 CDS
T05605
Name
(RefSeq) syntaxin-binding protein 5-like isoform X1
KO
K08518
syntaxin-binding protein 5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112255799
Membrane trafficking [BR:
otw04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
112255799
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
112255799
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LLGL
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_RIG_2nd
ANAPC4_WD40
WD40_Prp19
Beta-prop_HPS5
WD40
Beta-prop_IFT140_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR19_1st
Lgl_C
EIF3I
Beta-prop_EML
PEP5_VPS11_N
WD40_like
KNTC1_N
Synaptobrevin
RAB3GAP2_N
WDR54
Motif
Other DBs
NCBI-GeneID:
112255799
NCBI-ProteinID:
XP_042181156
LinkDB
All DBs
Position
LG08:12144997..12191305
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AA seq
1197 aa
AA seq
DB search
MKKFNIRKVLDGLTASSSGTASPQPGTNQNDVIQETLQSEHFQLCKTVRHGFPYQPSSMA
FDPVQKILAIGTQSGAVRLFGRAGVECYCQHDSGAAVIQLQFLVNEGALVSALADDSVHL
WNLRQKQPAILHTLKFNRERITFCHLPFQSKWLYIGTEKGNIHIVNVESFTLSGYVIMWN
KAIELSSKSHPGPVVHISDNPMDEGKILIGFECGTVVLWDLKCKKADYRYNHDEAIHSVA
WHHEGKQFTCSHSDGTLTTWNVRVPAKPTITITPHGKQPKDGKKPEPCKPILKVEYKTTR
AGDAFVVMSGGLSYDTGCRRSCLTVMHGKSTAVLEMDYPIVDFLTLCETPYPNDFQEPYA
VVVLLEKDLVVIDLEQIGYPIFENPYPLSIHESPVTCVEYFADCPPELIPALYSVGSRQK
RQGYSKKEWPISGGNWGQGTLSYPEIIVTGHADGSIKFWDASAIMLQVLYKLKTAKVFEK
ALKGGKEEKPSTEIVDEDPFAIQTLSWCPESRMLCVAGVSAHVIIYRFSKQEMTTEVVQL
LEVRMQGELNDVDSPDPAGDHPPTPSTPVPPSSSSPTQDGEPPEAQPFTSDDRPRDNVPG
LKVWSAPLKQSPGYQVELVIQLVWVSGEPPQQITSLAVSSSDGLVVFGNSSGLAVVDYLQ
KSLLLNMSTSELYSPSDPYQRQPQSPRKTRQPSGDKDIPPVTSCMSRLSIFYTSMKKTYH
SSNSPLSDNSDGNNISEEKSSKSPTSAAFQYQGVLNELMSTEVFLLPGSTTPTNSDDEHK
QKRFIEMVKSKSRRFSKTVANDFAKMSKKISSPTEQKTGLDAKDSLFSRSRSSSVTSIER
ESREAISSFHFSESFPRKTDSSPSPSLWLGTTQGTVLVLSLSLPPTGDQRLQQPVGVSSC
GTLVRLKGGILTMAFLDSLGAVLPPSYEPWSEPNAPDEEKTRRRRPASPPPTQEGQDRQY
AVVCSEKQAKVVGLPSQSCFFKHNITESSFVLRADVVQMAAGLCLACFCANGHIMTLSLP
SLRPLLDVNYLPLTDMRIARTFCFSNLGQAMYLTSPTEIQRITYSQETCDNLQEMMGELF
TPLETPEAPNRGFFKGLFGGGAQSLDREDLFGETAAGKASRSLAQHIPGPQGMEGMKGAA
SGVVGDLARARIALDERGQKLGELEDRTAAMMASADSFSKHAHDMMLKYKDKKWYQL
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagttcaatatcagaaaagtgctggacggcttgactgcttcttcctctggcact
gcatctccacaaccaggaactaatcaaaacgatgtgatccaagagacgctacaatcggag
catttccagctctgcaagactgtgcgccatggctttccctaccagccctcctccatggcc
tttgaccctgtgcaaaaaattctggccatcgggactcagagcggagctgtgagacttttt
ggccgtgcgggtgtggagtgttactgtcagcatgacagtggtgcagctgtaatccagctt
cagtttctagtcaacgagggggcgctggtgagtgccttagctgatgacagcgttcacctg
tggaacctgcggcagaagcaaccagctatcctgcacactctcaaattcaatcgggagagg
atcacgttttgtcacctgcccttccagagtaaatggctgtacatcggcacagagaaagga
aacatccacatcgtcaacgttgagtccttcacactgtcaggctacgtcattatgtggaac
aaagccatcgaactgtcctccaagtcacaccctgggcctgtggtccacatcagtgataac
cccatggatgagggaaagattttgattggatttgaatgtgggaccgtggtgttgtgggat
ctgaaatgcaaaaaagctgactaccgctacaatcatgatgaggccatccactcagtagcc
tggcaccatgagggaaaacagttcacctgcagccactcagatggaactctgaccacatgg
aacgtacgtgtccccgccaagcctacaatcaccatcacaccacacggtaagcagcccaag
gatggaaagaagccagaaccatgtaaacctatcctcaaagtggagtataaaacgactaga
gctggggacgccttcgtggtcatgtctggaggcctgtcatatgacacagggtgcaggagg
tcctgtctgacggtgatgcatgggaagagtactgctgtcctggagatggactatcccatc
gtagacttcctcacgctctgcgaaacaccatatcctaatgatttccaggagccttatgct
gtagttgtcctcttggaaaaggatttagttgtcatcgaccttgaacaaattgggtaccca
atatttgagaacccgtaccctctgtcgatccacgagtctccagtgacgtgcgtggagtac
tttgctgactgccctcctgaactcatacctgcactttactctgtgggctcccggcaaaag
agacagggttacagtaagaaggaatggcctataagtggtggtaactggggccaaggcaca
ctgagctaccctgagatcatcgtcactggacatgctgacggatcaatcaagttttgggat
gcttctgcaataatgctccaagtactgtacaagctgaagactgccaaggtgtttgagaag
gctctaaagggcggtaaggaggagaagccgagcacagagatagtggatgaggatcccttt
gccatccagactttgtcgtggtgcccagagagcagaatgctgtgtgtggccggagtctcc
gcccacgtcatcatctataggttcagcaaacaggaaatgaccacagaggtggtgcagctg
ttggaggtgcgtatgcagggggagctgaacgatgtggattctccagacccagcaggagac
catcctcccaccccctctaccccagtacccccctcctcctccagccctacccaggacgga
gagccccctgaggcccagcccttcacctctgatgaccggcccagggacaacgtaccaggc
cttaaggtctggagcgcccctctgaagcagtctcctggttaccaggtggagctggtcatt
caactggtctgggttagtggggagccgccgcagcagatcaccagcctggccgtcagctcg
tcagacggacttgtggtgtttggcaacagcagcggtctggctgtcgtggactaccttcag
aagagcctcctcctgaacatgagcacgtcagagctgtacagtccctcagacccctaccag
agacagcctcagtcgcctcgcaagacacgccagccatctggagacaaagacattccgcct
gtgacatcttgcatgtcccgcctttctatattttatacgtctatgaaaaagacctatcat
tcttctaactcccctctcagtgataacagcgatggaaacaacatttcagaggagaaaagc
agcaaatcaccaacgtcagctgcttttcagtatcaaggagtgttgaatgagttgatgtcc
actgaagtgttcttgttaccaggctctacgacacccaccaattcagacgatgaacacaaa
cagaaaaggtttatagaaatggtgaagtccaaaagcaggcgcttttccaagacggttgcc
aatgactttgccaagatgtcaaagaaaattagctcacctacagagcaaaagacaggcctg
gatgccaaggacagtttgttcagccgctccaggagttccagtgtgaccagtatagagcgg
gagtcccgcgaagccatctcctccttccacttcagtgagagtttccccaggaagacggac
agcagccccagccccagcctgtggttgggtactacccagggcactgtcctggtcctctcc
ctcagcctgccacctacaggggaccagaggctgcagcaacctgtcggagtctcttcctgt
ggtactctggtcagactaaaaggaggtatcctgactatggccttcctggactcccttggg
gcggtcctacccccttcctacgagccgtggtccgagcccaacgctccagacgaggagaag
acgaggaggcgcaggccggcttccccaccccccacccaggagggtcaggaccgccagtac
gctgtggtgtgctcagagaaacaggccaaggtggtgggtctgccctcccagtcctgcttc
ttcaaacacaacatcacagagagctccttcgtgctgagagctgacgtggtgcagatggcc
gctggactctgcctcgcctgcttctgtgctaatggacacatcatgactctgagtctaccc
agtctcagaccactcctggatgtgaactaccttcccctgacagacatgaggatagcccgg
accttctgcttctccaacctgggccaggccatgtacctcacctcccccaccgagatacag
aggatcacatacagccaggagacctgcgacaatctgcaggagatgatgggagagctgttt
acaccgttagagacacctgaagctcctaatcgaggtttcttcaagggcctgtttggggga
ggagctcagtcgctggatagagaagatctgtttggtgagacagcggcgggtaaggcatct
cgtagcctggcgcagcacatccccgggccccagggcatggagggtatgaagggagcagcc
tctggggtggtgggggacctggcccgtgccaggatagccctggatgagagggggcagaaa
ctgggcgagctggaggacagaaccgcagccatgatggccagcgctgactccttctctaaa
cacgctcatgatatgatgctgaagtacaaagataagaagtggtaccagctctga
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