Oncorhynchus tshawytscha (Chinook salmon): 112255810
Help
Entry
112255810 CDS
T05605
Name
(RefSeq) calpain-1 catalytic subunit-like
KO
K01367
calpain-1 [EC:
3.4.22.52
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04141
Protein processing in endoplasmic reticulum
otw04210
Apoptosis
otw04217
Necroptosis
otw04218
Cellular senescence
otw04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
112255810
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
112255810
04217 Necroptosis
112255810
04218 Cellular senescence
112255810
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
112255810
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
otw01002
]
112255810
Enzymes [BR:
otw01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.52 calpain-1
112255810
Peptidases and inhibitors [BR:
otw01002
]
Cysteine peptidases
Family C2: calpain family
112255810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
CAPN13-like_C_EFh
EF-hand_1
EF-hand_6
EF-hand_7
Motif
Other DBs
NCBI-GeneID:
112255810
NCBI-ProteinID:
XP_042181115
UniProt:
A0A8C8LZ58
LinkDB
All DBs
Position
LG08:complement(8686081..8713100)
Genome browser
AA seq
708 aa
AA seq
DB search
MPPPGVCMSIMQERHKKEGVGSLANPEKHSNQDFQQLTQYCLARGVRYIDEIFPPDHNSI
GDGLLSPDDMGRVVWLRPAKMVQNPDFILDGLSRFDFGQGMVGDCWFLASIGALTFQKHI
LEQVVPLNQSFKEDYCGIFHFRFWRFGKWMDVVIDDKLPTVDGRLIFVHSKTPNEFWPAL
LEKAYAKVCGSYADMNSGTLSEAMMDFTGGVHITFKLTDAPPNLWDLLFRAAQSKSLMGC
GTPQGETSANTVAPNGLVRGHAYTITGVKQIMSQGMLVNLIRLFNPWGQGEWKGDWSDKS
SMWQTVSPDDRKMCLSVEEDGEFWMTMKHFCEHFVDVDICCLCPDFLDGNSTCHWIPSFH
DGRWVAGTTAGGCMNFPNSFWINPQYRVKIKGLDRDCSETQGDNNMLVSLMQKPDKRNRR
LVKSLHIGFSIFEVSDQFKGQSGKFPASFFNNNVPVAQSKNYLNAREVMEFFRLKPGEYL
IVPSTFKPNETASFILSILSKAETHIHENSNDQDMEDILFSPKTPKPTSTDKFEYNGGDV
DDKRTLFQKYSDEFEEVNAEQLQSCLNENLIQGNAKKTQGFSLESCRSMLALMDTSITGK
LNLAEFLRLWRKVTVYKDIFFRTDEDRSGMLSLSELRNAIMASGIRVGDDMLNLMALRYG
GCSGIISLESFISLVLRMDCMAKIFRQLNDGGVISLQENEWMYISMYT
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgcctcctcccggtgtgtgtatgagtataatgcaggagcgccacaagaaagagggtgtt
gggagtcttgccaacccagagaaacacagcaaccaagactttcagcagctgacgcaatac
tgtttggccaggggagtgaggtacatcgatgagatattccccccagaccataactccatt
ggtgatgggctactttcccctgatgacatgggcagagtggtgtggttgagaccagcgaaa
atggtacagaatccagattttatccttgatggactttcaaggtttgactttgggcaagga
atggttggagattgttggtttcttgcttccattggggctttgacgttccagaagcacatc
ctggaacaagtagtacccctaaaccaaagctttaaagaggattactgcggaatattccac
ttcaggttctggaggtttgggaagtggatggacgttgtgatcgatgacaagctaccaaca
gttgacggcaggctcattttcgttcattcaaaaactcccaatgagttttggcccgccttg
ctggagaaagcctatgccaaggtgtgtggctcctacgcagacatgaattcagggaccctt
tcagaggctatgatggacttcactggaggggttcacatcacattcaagctcactgacgct
ccaccaaatctgtgggacctcctgttcagagctgcccagtcaaaatcgctgatggggtgt
ggcacacctcaaggggaaacatcagcaaacacggtggcacccaacggattagtgaggggt
catgcttacaccatcactggggttaaacagatcatgagccaaggcatgttagttaatctg
atccgcctcttcaacccctggggccagggagagtggaaaggagactggagcgataagtct
tccatgtggcaaacagtgagtcctgacgatcggaagatgtgtctgtcagtggaagaggat
ggggaattctggatgacaatgaaacatttctgtgagcacttcgtagacgtggacatctgc
tgtctgtgccctgattttcttgatggcaactccacttgtcattggatcccttcattccat
gatggcagatgggttgcaggaaccactgctggtggttgcatgaatttcccaaacagcttc
tggataaatccccagtatcgggtgaagatcaagggattagacagggactgctctgagaca
cagggcgacaacaacatgttggtgtctctgatgcagaagcctgacaagagaaacagacgc
ctggtcaaaagtctccacatcggcttctccatctttgaggtgtctgaccaattcaaagga
cagagtgggaagtttcctgcctccttcttcaacaacaatgtgcctgtcgcccaatcgaag
aactacctgaatgctcgggaagtgatggagttcttcaggctgaaacctggtgaatacctg
atcgtgccatcaaccttcaaaccaaatgaaaccgcctccttcatcctgtccatcctctcc
aaggcagagacccacatccatgaaaactccaatgaccaagatatggaggatatcctgttt
tccccgaaaacgccaaagcccacatctacagacaaatttgaatacaacggaggagatgtg
gatgacaaaagaactctgtttcagaagtattctgatgagtttgaggaggtgaatgctgaa
cagcttcagagctgtctgaatgaaaatctcatccaaggaaatgcaaagaaaacacaaggc
ttcagcttggagtcctgtcgcagcatgttggccttaatggatacatcaatcactggaaaa
ctgaaccttgcagaatttctacgtctatggagaaaagttaccgtgtacaaggacatcttc
ttccgtacagatgaagaccgttctggaatgttgtcattgagtgaactgaggaacgcaatc
atggcttcagggatcagggtgggtgatgacatgttaaacctgatggctctgcgctacggt
ggttgttctggaatcatcagcctggagagtttcatcagcctcgtcctacgcatggactgc
atggccaaaatattcagacaactcaatgatggaggggtcatatctcttcaagagaatgag
tggatgtacatctctatgtatacgtaa
DBGET
integrated database retrieval system
