Oncorhynchus tshawytscha (Chinook salmon): 112255822
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Entry
112255822 CDS
T05605
Name
(RefSeq) vam6/Vps39-like protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04140
Autophagy - animal
otw04148
Efferocytosis
otw05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112255822
04148 Efferocytosis
112255822
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
112255822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112255822
Membrane trafficking [BR:
otw04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
112255822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_2
Vps39_1
CNH
Clathrin
Motif
Other DBs
NCBI-GeneID:
112255822
NCBI-ProteinID:
XP_042182157
LinkDB
All DBs
Position
LG08:3556570..3595809
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AA seq
832 aa
AA seq
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MHDAYEPVPILEKLPLQIDCLAAWAVCCVTVQDPRQSVREQHPCPRPLDLPADYCGLQGQ
RGNALRLSPAAVPSGEAQLRMCVAVKKKLQLYYWKDREFHELQGDFAAPDIPKSMAWCQN
SICVGFKRDYYLIRMDGRGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGVC
TQKYALNWTDIPIAMEHQSPYIIAVLPRYVEIRTFEPRLLVQSVELQRPRFITSAGPNIV
YVASNHFVWRLVPVSIASQIRQLLQDKQFELALQLANMKDDVEGDKRQQIHHIQNLYAFN
LFCQKRFDDSMQVFAKLGTDPTHVIGLYPDLLPADYRKQLHYPNPLPSLSGAELEKAHLA
LIDYLTQKRSHLVKQLNDSEPSTPSPLMEGTPTIKSRKKLLQIIDTTLLKCYLHTNVALV
SPLLRLDNNHCHIEESEYILKKAHKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGH
ERTVQYLQRLGMENLVIIFEFSPWVLKICPEDGLKIFTEDLTEVETLPRDKVLNFLKEGF
KELTIPYLEHIVHVWEETEPEFHNVLIQLYLERVQGLMKQYLNSLPEGVPAVAAGKEEGD
LGEFRNKLLCFLEVSTSYEPRRLISDFPFDGLLEERAVLLGRMGKHEQALFIYVHVLKDT
HMAEEYCHRHYDKETDRSQDVYLSLLRMYLSPPDVHCLGPIKMELLEPQANLMAALHVLE
LHHSKLNTTKAIDLLPANTQIREIRVFLESVLEEEAQRKRFDQVLKSLLQAEFLRVQEER
IFHQQVKCIITEEKTCRVCKKKMGNSAFARYPNGVVVHYFCCKDRGVCPTEQ
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgcttacgaaccggtccctatcctggagaaactgcctctgcagattgactgt
cttgctgcttgggctgtttgttgtgtcacagtacaagatcctcgtcagtctgttagagaa
caacatccatgtccacgacctcttgaccttccagcagattactgtggtctccaaggccag
aggggcaacgctcttcgcctgtcacctgcagcagtcccctcgggagaagcccagctgagg
atgtgtgttgctgtgaagaagaagcttcagctgtactactggaaggacagggagttccat
gagctacagggggactttgctgctccagacatcccgaagtccatggcctggtgtcagaac
tccatctgtgtaggcttcaagagagactactacctcatccggatggatgggcgtggttcc
atcaaggagctcttccccacggggaagcagctggagcccctggtggcccccctggctgat
gggaaggtggcggtgggccaggatgacctcacggtggtgctcaacgaggagggggtctgc
actcagaagtatgctctcaactggaccgacatccccatcgcaatggaacatcagtccccc
tacatcatagctgtcctgcctcgctatgtggagatcaggacctttgaacccagactgctg
gtccagagtgtggagctgcagagaccacgattcatcacctcagctgggcccaatatagtg
tacgttgccagcaaccattttgtctggcgcctggtgcctgtgtccatcgccagtcagatc
agacagttactacaggacaagcagtttgaactggccctgcaactggcgaatatgaaagat
gatgtggaaggagataagcgacagcagattcaccacatccagaatctctatgccttcaat
ctgttctgtcagaagaggttcgatgactccatgcaggtgtttgctaagctcggcacagat
ccgacccatgtgattggtctgtatcccgacctgctccccgctgactaccgtaaacagctg
cactaccccaaccccctgcccagtctgtctggagcagaactggagaaggctcacctggcg
ctcatagactacctgacacagaaacgcagccacctggtgaagcagctgaacgactccgag
ccgtccaccccgtctcccctcatggaagggactcccaccatcaagagcaggaagaaactc
cttcagatcatcgacaccacgctgctcaaatgctacctgcataccaacgtggccctggtg
tcccctctattgcgtctggataataaccactgtcacattgaggagagtgagtacatcctg
aagaaggcccacaagtacagcgagctcatcatcctctatgagaagaagggcctgcatcag
aaagccctacaggtgttgttggatcagtccaccaaggctaactctcctctaaagggacat
gagaggacggtgcagtacctccagagactggggatggagaatctggtcattatctttgag
ttctctccctgggttctgaagatctgtcctgaggacggactcaagatcttcactgaggac
ctgacggaggtagagaccctgcctagagacaaggtcctgaacttcctgaaggagggcttt
aaggagctcactatcccctaccttgagcacatcgtacatgtctgggaggagacggagcca
gagttccataacgtcctcattcagctgtacctggagagggtccaggggctcatgaagcag
tacctcaactccctgcccgagggggttcctgcagtggctgctgggaaggaggagggggac
ctgggagagtttaggaacaagcttctatgtttcctggaggtctctaccagctacgagcct
agacgtcttatcagtgacttcccctttgacggtcttctggaagagagggccgtgctgctg
ggtcggatggggaaacacgaacaggccctcttcatctacgtacacgtcctgaaggacaca
cacatggcagaggagtactgtcataggcattatgacaaagagacggacagaagccaggat
gtgtacctgtctctactgcgcatgtacctgtcccctcctgacgtccactgtcttgggcca
atcaaaatggagctgttggagccacaggccaatctaatggcagctctacatgtcctggag
ctgcaccacagcaagctgaatacaactaaggccatcgacctgctgccagccaacactcag
atcagagagatccgtgtgttcctggagagtgttctggaggaggaggctcagaggaaacgc
tttgaccaggtgctcaagagtcttctgcaggccgagttcctacgggtccaggaggaacgt
atcttccaccaacaggtgaagtgtatcatcacagaggaaaagacctgcagggtctgtaag
aagaagatgggaaacagtgccttcgccaggtatcccaacggtgttgtggttcattacttc
tgctgtaaggaccgaggggtgtgtcctacggagcagtga
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