Oncorhynchus tshawytscha (Chinook salmon): 112255859
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Entry
112255859 CDS
T05605
Name
(RefSeq) E3 ubiquitin-protein ligase synoviolin isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04120
Ubiquitin mediated proteolysis
otw04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
112255859
04120 Ubiquitin mediated proteolysis
112255859
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112255859
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112255859
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112255859
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_16
zf-RING_11
zf-RING_5
zf-ANAPC11
zf-RING-like
zf-HC5HC2H
FANCL_C
Motif
Other DBs
NCBI-GeneID:
112255859
NCBI-ProteinID:
XP_024284459
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Position
LG08:83053489..83065028
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AA seq
620 aa
AA seq
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MVRAALVTATSLALTGAVIAHAYLLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKF
MRKVFFGQLRAAEMEHLIERSWYAVTETCLAFTVFRDDFSPRFVGLFTLLLFIKCFHWLA
EDRVDFMERSPNISWVFHFRVFSLMLLLGVLDFLFVNHACHSIITRGASVQLVFGFEYAI
LMTMVFTTFIKYTLHTVDLQSDNPWDNKAVYMLYTELFTGFIKVLLYMAFMTIMIKVHTF
PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEDLLASDNVCIICREEMVT
GAKKLPCNHIFHASCLRSWFQRQQTCPTCRMDVLRASNPNQPPTPAPAQPPAPAAPVNAP
VPGPPGNVGPGMMPHFPPGLFPFWGPFPGAAPPAGAAGAPGATETPGATEAAQTQGAGTT
GASTVGAAPAPGGPMPGFPFHSFPPPPFPSAPWLTMPPPPPPFVSSMPPPPPALSTMSEA
ELRELEQEGRRGLEARLQCLHNIHTLLDAAMLNIDQYLTTVATLIPPQSETSSAAGEASG
SSPPSTSAETQENDSQSSTAAEPEAVNGATGFSQPDSTTLGDSEDQGDGEEVGEDGEPNP
SELRRRRLRKLETTPPPPDH
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgtgcagcgctggtgactgccaccagtctggctctgactggcgctgtgattgcc
catgcctacttgctcaaacaccagttctaccccactgtggtctacctcaccaagagtagc
cccagtatggcagtgttgtacatccaggcgtttgtgttggtgttcctgttgggaaagttc
atgcgtaaagtcttcttcgggcagctgagggctgcagagatggagcatctgatagagcga
tcctggtatgctgtcacagagacgtgtctggcctttaccgtgttcagggatgacttctct
ccccgcttcgtaggcctcttcaccctgctgctcttcatcaagtgcttccactggctggct
gaggacagggtggactttatggagagaagtcctaatatatcctgggtcttccacttcagg
gtgttctctctgatgttgttgctgggagtcctggacttcctgtttgtcaaccatgcctgt
catagtatcatcacacgaggggcttctgtccagctggtctttggatttgagtatgccatc
ctgatgacaatggtgttcaccaccttcatcaaatacaccctccacactgtcgacctccag
agtgacaacccctgggacaacaaagcagtctacatgctctacaccgagctcttcactggt
ttcatcaaggtcctcctgtacatggcgttcatgaccatcatgataaaggtgcacaccttc
cccctattcgccatccggcccatgtacctggctatgaggcagttcaagaaagctgttacg
gatgcaataatgtcacggcgagctatccgcaacatgaatacactttacccagatgccact
cctgaagatctgctggcttcagacaacgtgtgtatcatctgtcgtgaagagatggtgact
ggagccaagaaacttccttgcaaccatatcttccacgcaagttgccttcgctcctggttc
cagagacagcagacgtgtcctacatgtcgtatggatgtcctccgggcctctaaccccaat
cagcctcccaccccagcgcctgcccagcctcctgccccggcagcacctgtcaacgcccct
gtccctggtccacctgggaacgttggccctggaatgatgccccacttccccccagggctg
tttcctttctgggggcccttccctggagcggccccccctgctggtgctgctggcgcccca
ggggccacagagaccccaggggccacagaggcagctcagactcagggagctggcaccact
ggggccagtacagtcggtgctgctcctgctccaggaggccctatgcctgggttccccttc
cactccttcccacccccaccattcccctcagctccatggctgactatgccaccaccacct
ccaccgtttgtgtcatccatgccccctcctcccccggccctgtccaccatgtcagaggct
gagctgagggagctggagcaggagggccgtagaggcctggaggccagactgcagtgtctc
cacaacatccacactctactggacgctgccatgctcaacatcgaccaatacctcactacc
gtcgccacactcattcctcctcagtcagaaaccagcagcgcggctggagaggccagcgga
tcatctcctccctccactagtgcagaaactcaggagaacgactctcagagcagtacagcc
gctgaacctgaagctgtgaatggggccacaggtttctcccagccagactctaccacgttg
ggcgacagtgaagaccagggggatggagaggaagtcggggaagacggagagcccaaccct
tcagagctgaggcgccgtcgtctccgcaaactcgagaccacaccccctcctcctgaccac
taa
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