Oncorhynchus tshawytscha (Chinook salmon): 112255864
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Entry
112255864 CDS
T05605
Name
(RefSeq) synaptopodin
KO
K21112
synaptopodin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
112255864
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Gene cluster
GFIT
Motif
Pfam:
Calsarcin
Motif
Other DBs
NCBI-GeneID:
112255864
NCBI-ProteinID:
XP_042182069
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Position
LG08:85461671..85532672
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AA seq
1184 aa
AA seq
DB search
METERGYMSVRRGVSWSPGGGRKPLQRVHGVNTDTGKRQSDASSERRDYKAIKGQVTSTS
TNQLTRKTNLTRSASLSEKELKEARVRSQIIAAQLTVPSGCSNSRGVQLFNRRKQRVDAF
TLESCGERTRGVERDRDNRNNNLTWEGEREGPSGGTETDRQLNWKKGSETKPPLWSPPFG
SEVTGSNIMEDPGDEHIYEEVDVIQERHFQPVNEREEEEEERSGEREREEIYEDIEGEVK
DEIISVNDNNTGPVREEVGMNRGSYTYPTAPPESRRNGFHSTQGSAGEIQIGGRVSMSLS
RQTPTIVNRTARPFFSPPTVQLKSPEARNPVMDNNIPPATSYLTSTPPPAPSYSTPPLPA
FTATRPVAFSPPSCPVAFSPPSCPVAFSPPSCPVTFSPPSCPVTFSPPSCPVAFSPPSCP
VAFSPPSCPVTFSPPPPLSSCPMSPLPAFPIHPPPPSQSLSSPPPKSTVMFPRSTPVPQY
NPAPTAAPVSQYLPPNPLVTQYIPPPTSPRPNTFVPFTPQPIGQQNQQQPIKTGILEKGA
AAIRRSSTGRKSMFTFKEKPVMAPNPELLSLVQGNDDRKKHGLRSIPDSAPEEELLALGA
EASNFLAKDEVKAEAANVPEWSSCLKSSRTREPRGQHQPEQTLTNASGKGAELFAKRQSR
MEKYVVENQNVSGGGGGQMRSPSPTASLPPSWIYPSNMPGRVKAIANNTDLSARLTRTLQ
TPQPGNRRPSQQASTPAPVLAEPPLEYGCTKIEMDLSKHQPYQLNSSLFIFNPVQDSAST
VLSALPRVAPPPPKPLISSEAYSRQASLPSSNPQSHKYNSLPRFRPTMTPSLQPPSGGIR
GGDNYPPQHGGTPQLRDPRITSPVSAFSPERVASPRSSVQAPRPTFSAKRAGIEPQMRKE
SPPTPTTTPTRTPQFTRRISSPEGPPTSRPLHQAIATSPASPPWETRCKSPTVVNQTTKP
FSTASLSRPKQSTTTSPISSVSPWGSRCQSPNINQTTKPFSTTIPNSSSSRSSHQGTITS
PLSPSPLSPPWGSRCQSPIVSPNNSKANHRLLAKNIINAAKRKNSPSPGALSGHNLPISP
LGDNTTHQHHQHHYSSSKPPFNPYQPRAMGCQSPPFASPSPTPTGVIRSPVRLYNTRSLT
DSDASVESEDSGLRSPGLQRTHNTCPRGWGGSLRVKRGSVGTDL
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atggagacggagaggggttatatgtccgtgaggagaggggtaagctggagcccaggtgga
gggaggaagccccttcagagggtgcatggcgtgaacacggacaccggcaaaagacagagt
gacgcatcttcggaaaggcgggactacaaagcgatcaaaggacaggtgacatcaacctcc
accaatcagctgactcggaaaaccaacctgacacgtagtgccagcctatcagagaaggag
ttgaaggaggcgagggtgaggtcacagatcatcgcggcccagctgaccgtcccgtctggc
tgctccaactcccgtggagtccagctcttcaaccgccgcaagcagagggtcgacgccttc
acgctagagagctgcggggaaagaacgagaggagtggagagagacagagacaacagaaac
aacaacctgacatgggaaggggagagggagggtcctagtggagggacagagacagacaga
caactgaactggaagaagggcagcgagacaaaaccaccactctggtcgccaccttttgga
agtgaggtcacaggaagtaacatcatggaggacccaggtgacgagcacatctacgaggaa
gtggacgtgatacaagagagacacttccagccagtgaacgagagagaagaggaggaggaa
gagaggagtggagagagagaaagagaggagatatacgaggatattgagggtgaagtgaag
gatgagattatatcagtaaatgacaacaacactggtccagtcagagaggaagtggggatg
aatagggggtcatacacataccccacagctccccctgagagccggcgtaatggcttccac
agcacccagggctctgctggagagatccaaattggcgggcgagtttctatgtccctgtcc
agacagacccccaccatcgtcaaccggacagctagacccttcttctccccacccaccgta
cagcttaagtccccagaggccaggaatcctgtcatggataacaacatacctccagctacc
tcctatctgacctccactcctcccccagccccctcctactccactccccctctccctgct
ttcactgccactcgccctgtcgccttctcccctccgtcttgccctgtcgccttctcccct
ccgtcttgccctgtcgccttctcccctccgtcttgccctgtcaccttctcccctccgtct
tgccctgtcaccttctcccctccgtcttgccctgtcgccttctcccctccgtcttgccct
gtcgccttctcccctccgtcttgccctgtcaccttctcccctcctccccctctttcctca
tgccccatgtctcctctcccagccttccccatccatcctcctcctccctcccagtctctc
tccagtcctcctcccaagtctaccgtcatgttccctaggtctacacccgtcccccagtac
aaccctgctcctacagctgccccagtgtcccagtatctaccccccaaccctcttgtcact
caatacatccctcctccaacctcccccagacccaacacctttgtccccttcacccctcag
cctattggtcaacagaaccagcagcagccaatcaaaacgggcattctagagaaaggggcg
gcggccatcagacgatcgtcaacaggcaggaagtccatgttcacctttaaggagaagcct
gtcatggcacccaaccctgaactcctctctctggtccaggggaacgatgataggaagaag
cacggcctccgctccattcccgactcagccccagaggaggagctgctggctctgggggcc
gaggcctctaacttcttagccaaggatgaggtgaaggcggaggctgccaacgtgccggag
tggtcctcctgtctcaagagctccagaaccagggaacccagggggcagcaccagccagag
cagaccctgaccaacgcatcagggaagggggccgagctgttcgctaagcgccagtccagg
atggagaagtacgtagtggagaaccagaatgtgtccggtggtggaggtggtcagatgagg
tctccatctcccaccgcgtctctgccgccatcttggatctatccatctaatatgcctggc
cgggtcaaagctatcgctaacaacactgacctcagcgccaggctgactcggaccctccag
acccctcagcctgggaacaggaggcccagccagcaggcttcaaccccagccccggtcctt
gcagaaccacccctggagtacggctgcaccaagatagagatggacctctccaagcaccag
ccctaccagctcaactcctccctgttcatcttcaacccagtccaggactctgccagcacc
gtgctgagcgctctgccccgagtggcccctccaccacccaaacccctgatctcatctgag
gcctactccaggcaggcttccctgccctcctccaaccctcagtcacacaagtacaacagc
ctgccccgcttcaggcctaccatgaccccgtcacttcagcccccatcaggaggaattaga
ggtggggataattatcctccacaacatggggggactccacagctgagggaccccaggatc
acctctcctgtctctgccttctctccggagagagtggcctctcctcggtcgagcgtccag
gcacccagacccaccttctctgccaagagggcagggatcgaaccccagatgaggaaggag
tcccctccgacccccaccaccacccccaccaggacaccgcagttcacccgtcgaatcagc
agcccagagggaccccccacttccaggcccctccaccaggcgatagccacctcccctgcc
tccccaccctgggagacgaggtgcaagtcacccacggtggtcaaccaaaccaccaaaccc
ttctccacagcctctttatccaggcctaaacaatccactaccacctcacctatatcgtct
gtatctccctgggggtcccgctgtcaatcccctaatatcaaccagacaaccaagcctttc
tccaccaccatccccaactcttcctcttctagatcctctcaccaaggcaccatcacctct
cctctctccccctcacccctatcccctccctggggttccagatgccagtctcccatcgtc
agccccaacaactccaaggcaaaccatcgcctgttagccaagaacatcatcaacgccgcc
aaacgtaaaaacagcccgtccccaggtgctctgagcggccacaacctcccaatctcccca
ctaggtgacaacaccacccaccagcaccaccagcaccactatagcagctccaaacccccc
ttcaacccctaccagcccagggccatggggtgccagtctccccccttcgccagcccttct
cccacccctacaggggtgatccggtccccagtaaggctctacaacaccaggtccctcact
gactcggatgcttcggtggagtcggaggactctgggctgaggtctccaggactgcagcgt
acccacaatacctgtccccggggctggggcggcagcctgagggtgaagaggggtagtgtt
ggcaccgacctatag
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