KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112255874
Entry
112255874         CDS       T05605                                 
Symbol
thoc3
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013  Nucleocytoplasmic transport
otw03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112255874 (thoc3)
  09122 Translation
   03013 Nucleocytoplasmic transport
    112255874 (thoc3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:otw03019]
    112255874 (thoc3)
   03041 Spliceosome [BR:otw03041]
    112255874 (thoc3)
Messenger RNA biogenesis [BR:otw03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     112255874 (thoc3)
Spliceosome [BR:otw03041]
 Complex C
  Other components
   EJC/TREX
    112255874 (thoc3)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    112255874 (thoc3)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40 Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st ANAPC4_WD40 WDR55 Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_Aladin Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_EML DSE1_N Beta-prop_WDR36-Utp21_1st Beta-prop_WDR35_TULP_N RMC1_N eIF2A WD40_RFWD3 Beta-prop_NOL10_N Beta-prop_HPS5 Beta-prop_TEP1_C NBCH_WD40 Tricorn_2nd WD40_MABP1-WDR62_1st PD40 WDR90_beta-prop_4th TRM82_WD Beta-prop_SPT8 Beta-prop_ACSF4 ASA1 Beta-prop_EIPR1 B-prop_COPA_B_2nd Beta-prop_WDR75_1st Beta-prop_NUP159_NUP214 PAC11 DPPIV_N Beta-prop_Nup120_160 Beta-prop_NWD2_C Beta-prop_ELP1_1st WD_LRWD1 Beta-prop_WDR11_1st Cytochrom_D1 YNCE
Other DBs
NCBI-GeneID: 112255874
NCBI-ProteinID: XP_042182014
LinkDB
Position
LG08:complement(82743608..82746600)
AA seq 322 aa
MASKYYQEMQESFRNNNKSREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFVLEKDRL
VKENNYRGHGDSVDQLCWHPTNPDVFVTASGDKTIRIWDVRTTKCTATVNTKGENINICW
SPDGQTIAVGNKDDVVTFIDVKSHRSRAEEQFKFEVNEISWNNDTNMFFLTNGNGCINIL
SYPELKPIQSINAHPSNCICIKFDPTGKYFATGSADALVSLWTVEELVCVRCFSRLDWPV
RTLSFSHDGKMLASASEDHFIDIAEVETGEKLWEVQCESPTFTVAWHPKRPLLAYACDDK
EGKYDNNRESGTVKLFGLPNDS
NT seq 969 nt   +upstreamnt  +downstreamnt
atggcgtccaaatattatcaagagatgcaagagagttttagaaataacaacaaaagcagg
gaattccctgcgcatagcgctaaagtccattcagtagcatggagttgcgacggcaggagg
ttggcatctgggtcttttgataaaacagcaagcgtatttgtcttggaaaaagaccgtttg
gtgaaggagaacaactacagaggccacggagacagtgttgatcagttgtgttggcatcct
accaacccagacgtgtttgtcactgcatcaggggacaagaccatacgcatctgggacgtc
agaacaacaaagtgcacggctactgtcaacactaaaggggaaaacatcaacatctgctgg
agtcccgacggccaaacgatagccgttgggaacaaggacgatgtggttaccttcatcgac
gtcaaatcacaccggtcacgagctgaggagcagtttaagtttgaagtcaacgagatctcg
tggaataatgacaccaacatgttctttctcaccaatggaaacgggtgcatcaacatcttg
agttatcccgagctgaagcccatccagtcgatcaacgcccatccctccaactgcatctgc
atcaagtttgaccccacggggaagtactttgccacaggaagtgcagatgccctggtcagt
ctgtggaccgttgaagaactggtctgtgttcgctgtttctccaggttggactggccagtg
agaacattgagtttcagccatgatgggaagatgctggcttcagcctcagaggaccacttc
atagacatagcagaggttgaaacaggagagaagctgtgggaggtccagtgtgagtctcct
acgttcacagtagcctggcatcctaagagaccgctgctggcctacgcatgtgatgacaag
gaagggaagtacgacaacaatagagagtctggcacagtcaaactgtttggattacctaat
gattcctga

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