Oncorhynchus tshawytscha (Chinook salmon): 112255931
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Entry
112255931 CDS
T05605
Symbol
si:ch211-114c17.1
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112255931 (si:ch211-114c17.1)
Spliceosome [BR:
otw03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
112255931 (si:ch211-114c17.1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
TPR_12
HAT_Syf1_CNRKL1_C
TPR_19
TPR_16
TPR_MalT
HrpB1_HrpK
UTP6_C
TPR_21
Motif
Other DBs
NCBI-GeneID:
112255931
NCBI-ProteinID:
XP_024284548
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All DBs
Position
LG08:complement(74022237..74028442)
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AA seq
721 aa
AA seq
DB search
MAAEGSVLEDLSSNGLMEGPSAPEATEAVQHSTEMEEVSEENGGEEASEAAAATAYNMPL
VENEEEEDGELPADFDRLWKLAHDNPQDFSSWTDLLQYSEQESHMTASRRALVAFLARYP
LCYGYWKKFADLERRAGYTNKAQEVCVQGLKAIPLSVDLWIHYINLLLGTLNMNLPESSQ
CIRSAFEEAVAAAGLDFHSDRLWELYIEWEKEQGDMKAATGVYDRILRVPTQLYSSHYEK
FKTHLNAHAPKDVLSAVEYEGLLEESKQIHKTEKAELAEGEDELPPGEEKEPTEEEVIPK
MRELLLARREKVYQDLEGEVRKRWNFEEAIKRPYFHVKPLDRTQLKAWHSYLDWELTQLG
GGGEKEVETEPDSMEGQEEEQKEGSKSSGIISGGDRRVRILFERCLIACALYEEFWTKYV
QYLEPQSLYEARGVFRRACEIHLAHKHTMHLQWATFEERHGDLTEARRVLESLETSIPGL
AMVRLRRAGLERRAGRLDESEALLRDAVDQAKETPHLHAFYSIKLARLLLKLCKNPSKAR
GVLQEALEISPDNGKLHLNLLELEVSGDPRGSPEGVQQCVTRALAAPLSPRTKILFSQRG
LQYAEDYGTSVQSVLTVYEEHQKLLKELGNKKRRAENGDSEDPEKMSKGEDGSAVPAPPP
APPTMPHVPMTTPPPPMMGGDMSAAHAGYAGYGSWYQQPQYGGYGGYQQPWNYNQGYYPP
S
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgaaggctccgttttagaagacctgagcagcaacgggctaatggagggtcct
tcggctccggaagccacggaggctgtccaacattcaacagagatggaagaggtatcagag
gaaaatggtggagaagaggcttcagaagcagcagctgcgacagcatacaacatgcctctg
gtggagaatgaggaggaagaggacggagagttgccggcggactttgaccgactctggaag
ctggcccatgacaatccacaggatttttctagctggactgacctgctgcagtacagtgag
caagagagtcacatgacggcatcacgtcgagcgctggttgcctttctggcgcgttacccc
ctgtgctatggatattggaagaagtttgccgacttggagcgacgtgcaggctacaccaac
aaagctcaggaggtgtgtgttcagggtctgaaggccatccctctgagcgtagatctgtgg
atccactacattaacctgctactgggcacgctgaacatgaacctgccagagtcctctcag
tgcattcgcagtgcatttgaagaggcggtggcagcggcaggactagacttccactctgac
cgtctgtgggagctgtacatcgagtgggagaaggagcagggagacatgaaggctgccact
ggagtctacgacagaatcctcagagtccccactcagctgtacagcagccactatgagaaa
ttcaagactcatcttaatgctcatgcgcccaaggacgtcctctcagcagtggagtatgag
gggttgcttgaggaatctaaacagatacacaagactgagaaggctgagttggctgagggg
gaagatgagttaccgcctggggaagagaaggaacctacagaggaagaggtgattccgaag
atgcgagaactcctattggctcgcagggagaaggtgtaccaggaccttgagggagaggtc
aggaagaggtggaactttgaggaagctatcaagcgtccttatttccacgtgaaacctctg
gaccggacgcagctgaaagcctggcactcctacctggactgggagctcacccagctggga
ggggggggtgaaaaggaggtggagaccgaaccagactccatggagggccaggaagaggag
caaaaagaggggtcaaagagcagtgggatcatttccgggggtgaccggagggtacggatc
ctgtttgagcgctgtctgattgcctgcgcgctctacgaggagttctggaccaagtatgtt
cagtacctggaacctcagagtctgtacgaggcacggggagtgttcaggcgagcctgtgag
atccacctggcacacaaacacaccatgcacctgcagtgggccacttttgaggagaggcat
ggtgatctaacagaggcacggcgtgttctagaatctctggaaacctctatcccaggattg
gccatggtccggctgcgcagggcagggctagagagacgggcgggccggctagatgaatca
gaagctctgctcagggacgcggtggaccaagccaaagagactcctcacctccatgcattc
tactccatcaaactagcccggctgttgctgaagctttgcaagaaccccagcaaggcccgg
ggtgtcctgcaggaggcgctggagattagcccagataacggtaaactgcacctgaacctg
ctggagctggaggtgtctggtgaccccagagggtcacccgagggggtgcagcagtgtgtg
actcgggcgctggccgcacccctctccccacggaccaagatcctcttttcccagaggggc
ctacagtacgctgaggactatgggacttctgtgcaaagtgtgctaacagtctatgaggag
catcagaagctgctgaaagagcttggcaacaagaagagaagggctgagaacggagacagc
gaggacccagagaagatgagtaaaggagaagacggctccgctgtgcccgctccaccacca
gcccctcccacaatgccccatgttcccatgacgacaccacctccacctatgatgggtggg
gacatgagtgcggctcatgcaggctacgcaggctatggaagctggtatcagcaaccacag
tacgggggatacggaggctaccagcaaccctggaactacaatcagggttactaccctccc
agctaa
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