Oncorhynchus tshawytscha (Chinook salmon): 112256118
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Entry
112256118 CDS
T05605
Name
(RefSeq) protocadherin alpha-C2 isoform X2
KO
K16493
protocadherin alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112256118
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112256118
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Centrosome formation proteins
Other centriole associated proteins
112256118
Cell adhesion molecules [BR:
otw04515
]
Cadherins
Protocadherins
112256118
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_tail
Cadherin_2
Cadherin_C_2
Cadherin_3
Motif
Other DBs
NCBI-GeneID:
112256118
NCBI-ProteinID:
XP_024284890
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Position
LG08:63204537..63402992
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AA seq
1006 aa
AA seq
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MAVAVRCCYSITQNVPFTFYLVIFVLSGLTNAQIRYTIPEELENGAVVGDIVRDLGLDLQ
KLSSRRVRITSDSARRYFNINHKNGKLSVSDRIDRETLCEFSGTCLLNLEVGVENPLEVH
NVEVEILDANDNSPQFPRDEYQLEISESAITGSRFPIEGAQDADEGSNSVRLYRLSNNEH
LALDSNKPATNSKNIQLVLKKPFDREHTPSHQLILTAVDGGTPARTGTAKINVRVLDSND
NVPVFDNSVYKVKLSENSPKGALVIKLNATDRDEGTNGEVFYSFSSYTPERVRQMFSMDT
DTGEIRVKKNIDYEETNSYEMYIQAMDRGPSAVVVHCKVVVEVLDVNDNIPEIVLSSLSS
PVREDARADTVVALISLNDRDSAQNKQVTLEIQPGVPFKIKSFRNHYTLVTAAFLDRETI
STYNVTVTAIDGGTPALSSHMSIKVDVADVNDNPPRFEQTSYTVYMTENNAPGASMCVVK
AMDADAGENARITYTVLNDNNHGIPVASYVSIKPDTGEAYALRAFDFEKLREFHFQVKAQ
DGGVPPLSRVATVYVYIMDQNDHSPRVVHPPANGTRTTETLMKNAEAGALVTKVVAWDGD
AGQNAWLVYALEQTTSELDLFKVHEHTGEIRTMRRVSEDNSTSFLLTVLVRDHGLPPLSS
TATINVHVMELPPKLTPDPKRIIRPHSPVLFSNVTLYLIVALSATTFVFLVTIVVLAIVR
CHAYCTQPGSCSPCCVSQKSVPEGGTSAGGGGGSLGRGGGGGGGGGGQGQPNNNVALRRD
LKVEPHYIEVRGNGSMTKTYCYKTCMTATSGSDTFMFYNTGRPHSGTWSSGGYVTSQSGQ
SQMFVRRLSMPDATAIQPKVPNSDWRYSASLRTGMQSSVHMEESSVMQGAQGVLVQNWPT
VSSATGDAEGGETSPPMGAGVDSNSWHFRYGAGGPGGPPQHLKPGEVPPEAFIIPGSPAI
ISIRQQGGEDDKSDFITFGKKEEAKKKKKKKKEKKDKKDKGKDDDE
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atggctgtggcggtgcgatgctgttacagcataactcagaatgtgccttttactttttat
ttggttatttttgtactcagtggccttacaaatgcacaaatacgatacaccattccggag
gagctagagaatggggctgtggtcggcgacattgttcgcgatttgggtctggacctgcaa
aagctctcctcccgacgcgtcagaatcacctcggacagcgcacggagatatttcaacata
aatcataaaaatggcaagctgtcggtaagtgaccgcatcgaccgggagacgctgtgtgaa
ttcagtggcacctgtttgctcaacctagaagtgggggttgagaacccgctcgaggtgcat
aatgtggaggtggagattctggatgcgaatgacaactcgccacagttcccccgggacgag
taccagctggaaatctcagagtccgccataactgggtcccggttccccatcgagggcgcg
caggatgcagacgaaggctccaactcagttcgcctctaccggctcagcaacaatgagcac
ctcgcgctggactccaacaagcccgcgacaaatagcaagaacatccagctcgtgctcaaa
aagccatttgaccgtgagcatacaccatctcatcagttgatactgactgctgtagatgga
ggcactccggcgcgcacaggtacagccaaaataaacgtgcgtgtcctggattccaacgac
aacgtgcctgtgttcgacaactccgtgtacaaagtgaaactttcggagaactcgcccaag
ggcgctctagtgataaagttaaacgccacagaccgggatgaaggcacaaacggggaggtg
ttttactcttttagcagttacaccccagagagggtgagacaaatgttctccatggacaca
gatacaggagagatcagagtgaagaaaaacatagactatgaggagactaactcctatgag
atgtacatacaagctatggacaggggtccttctgcagtggtagtccactgtaaagtggtg
gtggaggttttggatgtgaacgacaacattcctgaaatcgtgctgtcatctctttccagc
ccggtccgggaggatgcacgggctgacaccgtggtggctctgatcagtcttaacgaccgg
gactccgcccagaacaaacaggtgaccctggagatccaacctggtgtcccctttaagatc
aagtccttccggaaccactacaccttggtcaccgctgcattcctggaccgagagaccatc
tccacctacaacgtcacagtaaccgccatcgatgggggaaccccagccctgtcttcacac
atgtccattaaagttgacgtggccgatgtcaatgacaaccctccccgcttcgaacagact
tcctacacagtgtacatgacggagaataatgcacctggcgcatcgatgtgcgttgtaaag
gcaatggatgcagacgctggggagaacgctcgcatcacctacaccgtcctcaatgacaac
aaccacggcatccctgtggcgagctacgtcagcatcaaacccgacacgggagaggcctat
gccctgcgagccttcgacttcgagaagctcagagagttccacttccaggtgaaagcccag
gatggtggcgtgccgcccctcagccgcgtagcaacagtctacgtttacatcatggaccag
aacgaccactcccccagggtagtccatcctccagccaatgggacacggaccaccgagacg
ctgatgaagaatgcagaggcgggggctctggtgaccaaggtggtggcgtgggacggggac
gcaggtcagaacgcctggctggtgtacgccctggagcagaccacctccgagcttgacctg
tttaaagtccacgagcacacgggggagatccgcaccatgcggcgtgtcagcgaggacaac
tccacctctttcctgctgaccgttctggtccgtgaccatggcctcccgccgctttcctcc
accgccaccatcaatgtgcacgtcatggagctgccacccaagctgacccctgaccccaaa
cgcatcatcaggcctcacagcccggtgctgttctccaacgtaaccctctacctgatcgtg
gccctgagcgccaccacctttgtgttccttgtcaccattgtggtgttggccatcgtccgc
tgccacgcctactgcacccagcccggctcctgctcgccctgctgtgtgtcccaaaagagt
gtccccgaggggggcacctcggctggtgggggtggagggtcattgggtcgaggtggcggt
ggtgggggaggtggaggaggtcagggtcaacccaacaacaacgttgctctgcggagggac
ctgaaggttgaacctcactacatcgaggtgcgggggaacggctccatgaccaaaacgtac
tgctataagacatgtatgacggccacgtcggggagcgacaccttcatgttctataacacg
ggccggccccacagcggcacctggagctccgggggatacgtcaccagccagagtggacag
agccagatgtttgtacgcaggctgagcatgccagatgcaaccgccatacagcccaaggtg
ccgaattcagactggcgttactctgcctcacttaggactgggatgcagagctcagtgcac
atggaggagtcgtcggtgatgcagggagcccagggggttctggtccagaactggccgacc
gtgtctagcgccaccggagatgctgagggtggagagacgtccccgcccatgggagccgga
gtggatagtaacagctggcacttccgttacggtgcaggcggtcccggtgggcccccccag
cacctgaagcctggcgaagtcccccccgaagcctttatcatccccggatcccccgcaatc
atctcaatccgccagcagggaggagaggacgacaagagcgacttcatcactttcggaaag
aaggaggaggccaagaagaagaagaagaagaagaaggagaagaaggataagaaggataag
gggaaggatgatgacgagtag
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