Oncorhynchus tshawytscha (Chinook salmon): 112256167
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Entry
112256167 CDS
T05605
Symbol
kcnma1a
Name
(RefSeq) calcium-activated potassium channel subunit alpha-1a isoform X1
KO
K04936
potassium large conductance calcium-activated channel subfamily M alpha member 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
112256167 (kcnma1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112256167 (kcnma1a)
Ion channels [BR:
otw04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
112256167 (kcnma1a)
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Gene cluster
GFIT
Motif
Pfam:
Slo-like_RCK
Slowpoke_C
BK_channel_a
Ion_trans
Ion_trans_2
TrkA_N
BNR_3
Motif
Other DBs
NCBI-GeneID:
112256167
NCBI-ProteinID:
XP_042181029
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Position
LG01:complement(72026422..72334640)
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AA seq
1262 aa
AA seq
DB search
MLAEPDATVLHGSGNSMMSRNIYHNKNQDSSISISKMDVIIPFSPDVPCDNNGQRMWWAF
LASSMVTFFGGLFIILLWRTLKYLWTVCCHCNTKKKEAQKVNNPANSQAADGTPKGPDEK
DEVVPASEVGWMTSVKDWAGVMISAQTLTGRVLVVLVFALSIGALGIYFIDSSDPIESCQ
NFYKDFTLQIDMFFNVFFLLYFGLRFIAANDKLWFWLEVNSVVDFFTVPPVFVSVYLNRS
WLGLRFLRALRLIQFSEILQFLNILKTSNSIKLVNLCSIFISTWLTAAGFIHLVENSGDP
WENFQNSQSLSYWECVYLLMVTMSTVGYGDVYAKTTLGRLFMVFFILGGLAMFASYVPEI
IELIGNRKKYGGSYSAVNGRKHIVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNIS
PNLELEALFKRHFTQVEFYQGSVLNPHDLARVKIESADACLILANKYCPDPDAEDASNIM
RVISIKNYSPKIRIITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELKAGFIAQSCLAQG
LSTMLANLFSMRSFIEIEEDTWQKYYLEGVANEMYTEYLSSAFVGLSFPAVCELCYVKLK
LLLIAIENKSELGESSILINPGNHVKMQEGTLGFFIASDAKEVKRAFFYCKACHDDITDP
KRIKKCGCKRPKMSVYKQMKLACCFDCGRSERDCSCMSGSVHCNMDTLQRAYPLSSVSVH
DCATTLRAFEDEHPSTLSPKKKQRNGGMRNSPNNSPKMMSRHDPLLIPGNEQMENMDMNV
KQYDSTGMFHWCPSKEIEKVILTRSEASMTVLSGHVVVCIFGDVTSALVGLRNLVMPLRA
SNFHYHELKPIVFVGSLEYLRREWETLHNFPKVSILPGTPLSRADLRAVNINLCDMCVIL
SANQNNIDDASLQDKECILASLNIKSMQFDDSIGLLQANSQGFTPPGMDRSSPDSSPVHG
LVRQASVTTGANIPIITELVNDSNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSL
MSATYFNDNILTLIRTLVTGGATPELEALLAEENALRGGYSTPQTLANRDRCRVAQLALY
DGPFADLGDGGCYGDLFCKALKTYNMLCFGIYRLRDAHLATPSQCTKRYVITNPPYEFEL
VPTDLIFCLMQFDHNAGQSRASLSHSSHSSHSSSKKSSSVHSIPTTNRQNRSSKAREAGH
KQNATRMNRMSQERKWFTDEPENAYPRNIQIKPMSTHMANQINQYKSTSSLIPPIREVED
EC
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atgctagctgagccggatgccaccgttctccatggaagcggcaactctatgatgagtaga
aatatctatcataataaaaatcaggactcctcgatctctatatccaagatggacgtgatc
atccccttctcgccagacgtgccctgcgacaataatggccaacgcatgtggtgggcattc
ctcgcctcctctatggtgacgtttttcgggggtctcttcatcattctcctttggaggacc
cttaaatacctgtggaccgtgtgctgccactgcaacaccaaaaagaaggaggcccagaag
gtgaataaccctgctaacagtcaggcagcagatgggacacctaagggtcctgatgagaag
gacgaagtggtacctgccagcgaggtggggtggatgacctctgtgaaggactgggccggg
gtcatgatatcagcacagacactcaccggcagagtcctggtcgtgctcgtctttgctctc
agcattggagcacttggaatatactttatagactcttctgatcccatagaatcctgtcag
aatttctacaaagatttcacgttacagatcgacatgttcttcaatgtcttcttcctcctc
tactttgggctgcggttcatagcagccaatgataagctgtggttctggctggaggtcaac
tcagtggtggacttcttcactgttcctcctgtcttcgtatcggtctacttgaataggagc
tggctgggcttaagattcctgagagccttgagattgatacagttctcagaaattttacag
tttttgaatatcttaaaaacaagcaattccatcaagctggtgaacctgtgttccatcttc
ataagcacatggctaacagctgccggattcatacatttggtggaaaactcaggggatcct
tgggaaaacttccaaaattcccagtcactttcctattgggaatgtgtctacttgctcatg
gtcactatgtcaacagtgggctacggggatgtctatgcaaaaaccaccctgggacgcctg
ttcatggtcttcttcatccttgggggtttggccatgtttgccagctacgtccctgaaatc
atagagttaataggaaaccgcaagaaatatggtggttcctatagtgcggttaatgggaga
aagcacattgtggtctgtggtcatataacgctcgaaagtgtctccaacttcctcaaagac
ttcctacacaaggacagggatgatgtcaatgtagaaattgtttttctccataatatttcc
cctaatcttgagctggaagccttgttcaaacgccactttacccaagtggagttctaccag
ggatctgttctcaaccctcacgatctggcccgagtgaagattgagtcagcagacgcctgt
ctgattctggctaataaatactgtccagatcccgatgctgaagatgcctccaacatcatg
agggtcatctctatcaagaactattcccccaagatacgaattatcactcaaatgttacaa
taccataacaaggctcacctgctcaacattcctagctggaactggaaggagggggatgat
gcgatctgtctagcagagctgaaggctggcttcatagctcagagctgtctagcccagggc
ctctccaccatgcttgccaatctcttctccatgaggtctttcatcgagattgaagaggat
acgtggcagaagtactatttagaaggggtagctaatgagatgtacacagagtatctgtcc
agtgcctttgtggggctctccttcccagcagtctgtgagctgtgctacgtgaagctgaag
ctgttgcttatcgccatcgagaacaagtcggagctgggagagagcagcatcctcatcaac
ccggggaaccacgtaaagatgcaggaaggaactctggggttcttcatcgccagcgatgcc
aaagaagtaaagagagcatttttctactgcaaagcttgtcacgacgacatcacagacccc
aaacggatcaaaaagtgtggctgcaaacgacccaagatgtccgtctacaaacaaatgaaa
ctggcatgttgttttgattgcggccgttcagagcgagactgctcttgcatgtcaggcagt
gtacattgtaacatggacaccctacagagggcctacccactctcctctgtctctgttcat
gattgcgcaaccactttacgtgcctttgaagatgagcacccgtccactctgtcgcccaaa
aaaaagcagcgaaacggaggtatgcgaaactcacccaacaactcgcccaaaatgatgagc
aggcatgaccctctactaatccctgggaacgagcagatggagaacatggacatgaatgtg
aagcagtacgactccacgggaatgttccactggtgcccatctaaagagattgagaaggtc
atcctgacccggagtgaggcatccatgacggtgttgagcggccatgtagtggtctgtata
tttggagatgtcacgtccgctctagtggggctgcgaaacttggtgatgcctttgagagcc
agcaacttccattatcacgagctgaagcccatagtgtttgtgggctcgctggagtacctg
aggagagagtgggaaactctacacaacttccccaaggtctccatactacctggtacgcca
ttaagtcgtgcagatttaagggctgtcaacatcaacctctgcgacatgtgcgtgatactg
tcggccaatcagaacaatatcgacgacgcctcgctgcaggataaggaatgcattctggcg
tcgctcaacataaagtctatgcagtttgacgacagcatcgggctcttgcaggctaactcc
caaggtttcacgcctcctggaatggaccggtcctctccagacagcagtccagtacatggt
ttagtacgtcaggcctccgtcaccaccggcgccaacatccccatcatcactgaactagtg
aacgactccaacgttcagttcctggaccaagatgatgatgatgacccggacacagagctg
tacctgacacagcccttcgcctgcggaaccgccttcgctgtcagcgtgctggactctctc
atgagtgcaacatacttcaacgataatatcctcaccctgatccggacgctggtgactggg
ggagccaccccggagctagaggctctattggccgaagagaatgccctgcgagggggctac
agcacgccacagacactggccaaccgagacaggtgtcgtgtagcccagctagccctctat
gacgggccctttgccgacttgggggatggtggttgctatggagatttgttttgtaaagcg
ttgaagacgtacaacatgttgtgcttcggaatatacagattgagagacgctcacctcgcc
acgcctagtcagtgtaccaaacggtatgtgatcaccaaccctccgtatgagtttgagctg
gtccccacagacctgatcttctgcctgatgcagtttgaccacaacgcgggccagtcccgg
gccagcctctcccacagctctcactcctcccattcctccagcaaaaagagctcgtccgtc
cactccatccccaccaccaaccggcagaaccgcagcagcaaggcccgggaggccggccac
aaacagaatgcaacaaggatgaatagaatgagccaagaaaggaaatggtttacagatgaa
ccagaaaatgcctacccacggaacattcagatcaagcccatgagcactcacatggccaac
caaatcaatcaatacaaatccactagcagtctgattccaccaatcagagaagttgaagat
gaatgctga
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