Oncorhynchus tshawytscha (Chinook salmon): 112256269
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Entry
112256269 CDS
T05605
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03020
RNA polymerase
otw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
112256269
09124 Replication and repair
03420 Nucleotide excision repair
112256269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112256269
03400 DNA repair and recombination proteins [BR:
otw03400
]
112256269
Enzymes [BR:
otw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
112256269
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
112256269
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
112256269
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
112256269
NCBI-ProteinID:
XP_024285172
LinkDB
All DBs
Position
LG08:57068965..57084468
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDIQYDEDEDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEDPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSSIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYSHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIAAYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPSRETCSGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKITSQIFLGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaccaagatgaagatatccaatacgatgaggatgaggatgaaatcacccccgat
ttatggcaggaagcttgctggattgttatcagttcctattttgatgagaagggcctggtg
cgacagcagctggactcctttgacgagttcatccagatgtctgtgcagaggatcgtggag
gatgccccgcccattgacctgcaggctgaggcccagcacacctctggtgaggtggaggat
ccgccacgctacttgctgaagtttgagcagatctacctttcaaaacccactcattgggaa
agagatggagccccgtcgcctatgatgcccaacgaggccagactcaggaaccttacgtac
tctgcaccactgtacgtggacatcaccaagaccatcatcaaggagggtgaggaccagctg
cagacccagcaccagaagaccttcatcggcaagatcccgatcatgctgcgctccacctac
tgcctgctcagcggcctgacagaccgtgatctgtgtgagctcaacgagtgcccactggac
cccgggggctacttcatcatcaatgggtcagagaaggttctgatcgcccaggagaagatg
gccacgaacacagtgtacgtcttcgccaagaaggactcaaagtatgcgtacacaggggag
tgccgctcctgcctggaaaactcatcgcgccccaccagctccatctgggtcagcatgatg
gccaggggaggacagggggtgaagaaaagtgccattggtcagaggatcgtgtccactctg
ccctacatcagacaggaagtgcccatcatcatagtgttccgagccctgggctttgtgtcc
gacagagacatcctggagcacatcatctacgactttgacgaccctgagatgatggagatg
gtcaaaccatccctggacgaggcctttgtgatccaggagcagaacgtggcgctgaacttc
atcggctctcgtggtgccaagcccggtgtcaccaaggagaggaggatcaagtacgccaaa
gaggtgctgcagaaggaggtgctcccccacgtcggagtcagtgacttctgtgagaccaag
aaggcctatttcttagggtacatggtccacagactcctattagcggccctgggcagaaga
gagctggacgacagggatcactatggcaacaagagactagacttggctgggccgctgttg
gctttcctgttccgtggaatgttcaagaacctgctgaaagagatccgcatctacgcccaa
aagtttattgaccgagggaaggacttcaacctggagttggccatcaagacacgaatcatc
tccgacggcctgaagtactctctggccacagggaactggggtgacgtcaagaaggcccat
caggccagagctggagtgtcccaggtgctgaaccgcttgaccttcgcctccaccctctct
caccttcgtcgtgtgaactcccccatcggtagggacggcaagctagccaagccccggcag
cttcacaacacgctgtggggcatggtgtgccctgctgagaccccggagggtcatgctgta
ggcctagtgaagaacctggccctcatggcctacatctctgtgggctcccagccctctccc
atcctggagttcttggaggagtggagcatggagaacctggaggagatctcaccggcagcc
attgcggatgccacaaagatatttgtcaatggctgttgggtgggcatacacaaggaccca
gagcagctgatgaacacactgaggaaactgaggaggcagatggacatcattgtgtctgag
gtgtccatgatcagagacatccgagagagggagatccgcatctacacggacgccgggagg
atctgtcgtcctctgctgatcgtagagaagcaaaagctgctgctgaaaaggagacacatc
gaccagctgaaggagagggagtacaacaactacagttggcaggacctggtggccagcggt
gtggtggagtacatcgacaccctggaggaggagactgtaatgctggccatgacccctgat
gacctccaggagaagggcgtggcctactgttctacatacagccactgtgagatccacccc
tccatgatcctgggagtctgtgcttccatcatccccttccccgatcacaaccagtctccc
agaaacacataccagtctgctatgggtaaacaagccatgggtgtgtacatcaccaacttc
cacgtgcggatggacaccctggcccacgtgctctactacccccaaaaacccttagtcacc
acccgctctatggagtacctacgtttcagagagctccctgcaggcatcaactcgattgtg
gctattgcggcgtacactggctacaaccaggaggactctgtcatcatgaaccgctctgcg
gtggaccgtggattcttcaggtctgtgttctaccgctcctacaaagagcaggagtcaaag
aaaggcttcgatcaggaggaaatctttgaaaaaccctcacgcgaaacctgttcgggcatg
aggcacgccatttacgacaagctggacgacgacggcttaatagctcccggagtgcgtgtt
tccggcgaggacgtcatcatcggcaagacggtgaccctgccggagaacgacgatgagctg
gacagcaccaaccggcgctacaccaagagggactgcagcaccttcctccgcaccagcgag
acgggcatcgtggaccaagtcatggtcaccctcaaccaggagggctacaagttttgcaag
attagggttcgctctgttcgtatcccccagatcggtgacaagtttgccagtcgacacggg
cagaagggtacctgtggtattcagtacagacaggaggacatgcccttcacttgcgaggga
attaccccagacatcatcatcaacccccacgccatcccctctcgtatgacagtcggccat
ttgattgagtgcctgcagggcaaggtttcagccaacaaaggggagattggtgacgccacg
cctttcaacgatgcggtcaatgtgcagaaagtctccaacctgctgtctgaatacggatat
cacctgaggggcaacgaggtgttgtacaacggcttcaccggccgtaagattacctctcag
atcttcctcgggcccacatactaccagcgcctgaagcacatggtggacgataagatccac
tctcgggcccgaggcccagtccagatcctcaacagacagcccatggagggcagatcacgt
gacggaggtcttcgttttggggagatggagcgcgattgtcagattgcccacggcgcggct
cagttcctgcgtgagaggctgttcgaggcgtccgacccctaccaggtccacgtctgcaac
ctatgtggcctcatggccatcgccaacacccgcacgcacacctacgagtgcaggggctgt
cgcaacaaaacacagatctccctggtcagaatgccgtacgcctgcaagctgctcttccag
gagctcatgtccatgagtatcgcccctcgtatgatgaccagttag
DBGET
integrated database retrieval system
