Oncorhynchus tshawytscha (Chinook salmon): 112256324
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Entry
112256324 CDS
T05605
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 2
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112256324
Membrane trafficking [BR:
otw04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
112256324
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
I-set
Ig_3
ig
Ig_2
LRRNT
V-set
LRR_9
Ig_6
Receptor_2B4
Big_6
Motif
Other DBs
NCBI-GeneID:
112256324
NCBI-ProteinID:
XP_024285259
LinkDB
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Position
LG08:53778826..54162509
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AA seq
614 aa
AA seq
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MADCMSKVMLHTALSCWQPFLGLALVAVFMGSALGCPARCDCSAQSKSVLCHRKRLPSIP
DGIPIETRILDLSKNKLQAVNPDDFAPYPGLEDLDLSGNVISYVEPGAFNPLYSMHSLSL
KSNRIKLIPMGVFTGLSNLTRLDVSDNNIVILLDYMFQDLNNLKFLEVGDNDLVYISHRA
FSGLLSLETLTLERCNLTVVPTEALSHLHNLVRLHMRYLSISTLHAYSFKKLFRLRHLEI
DSWTSLDSVPANTLHGLNLTTLFITNTNLSSFPYQAIKHLHYLTLLNLSFNRIRHIEGRM
LSELVHLRELHLVGAQLSTVELYAFQGLRWLKVFNVSHNRLDTLEKGVFQAPEALEVLLI
DDNPLVCDCRLMWILQRRQSIYFGDSQPECSTPEGIRGRPFREFKETLLSYYVTCTKPKI
RENKTQTIAVDEGQPVRLYCSVEGTPRPVVSWLSPRRRLLTNKSHGRVMVHNNGTLEIKA
AEVQDGGVYLCMATNTAGNDSLMTSLAVKSLGSLYANRTQYYTDPSNATTNGTVNVTYGL
DLKTILVSTAMGCFTFLGVVLFCFLLLFVWSRGKGKHKNNIDIEYVPRSKSNGTSLDGGA
EGEAGPRRFNMKMI
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggccgactgtatgagtaaagtcatgctgcacacggccctctcatgctggcaaccgttc
ctgggactggcacttgtggccgtcttcatgggttccgccttgggatgtcccgcccgctgc
gactgctcggcccagagcaagtcggttctgtgccaccgcaaacgcctacctagcatccca
gacggtatccccatcgagaccaggatcctggacctgagcaagaacaagctgcaggccgtc
aacccggatgactttgccccctatcctggtctagaggatttggacctcagtgggaacgtt
atcagctatgtggagccgggggccttcaaccctctgtacagcatgcactcccttagtctc
aaaagcaatcgtattaagctcattcctatgggtgtcttcacaggcctgtccaacctcacc
cggttggatgtcagcgacaacaatattgtcatcctgctggactacatgttccaggacttg
aacaatctgaagttcctggaggtgggtgacaatgacctagtgtacatctcccaccgggcg
ttcagtggactgctgagcctagagactctaaccctggagagatgcaatctgacagtggtg
cctactgaggccctgtcccacctgcacaacctggtaagacttcacatgcgatacctcagc
atcagcaccttgcatgcctactccttcaagaagttgttccgattgcgccacctggagatt
gacagctggacctcgctggacagtgtgccggccaacacgctgcacggcctcaatttgacc
acgcttttcatcaccaacaccaacctgtcctccttcccataccaggcaatcaagcacctg
cactacctgacgctcctcaacctgtccttcaaccgcatcagacacatcgaaggcaggatg
ctgtcggagttagtgcacctaagggaactgcatctggtcggggctcagttgtcgaccgtt
gaactgtacgcatttcagggcctccggtggctcaaggttttcaacgtctcccacaaccgt
ttggacaccctggagaagggtgtcttccaagctcctgaggctctggaggtactcttgatc
gatgacaaccccctggtttgtgactgccgcctcatgtggatcctgcagaggaggcagtcc
atctactttggtgactcgcagccggagtgcagtacccccgagggcatccgcggcaggcct
ttcagggagttcaaggagaccctgctctcctactatgtgacatgcaccaagcccaaaata
cgggagaacaagacgcaaacaattgccgtagacgaaggtcagccagtgagactgtactgc
agtgttgaggggacccccaggccggtggtgtcgtggctgtccccacgccggcgcctcctc
accaacaagagccacggtagagtcatggtccacaacaatgggacgctggagatcaaggcg
gccgaggtgcaggacggcggggtgtacctttgcatggcaaccaacactgcgggtaacgac
tcattaatgacctccctagcagtgaaaagcctggggtcgctctacgcaaacaggacccag
tactacacagatcccagcaatgccactaccaatgggactgtcaacgtgacctacggcttg
gacctaaagactatcttagtgtcgacagcaatgggttgtttcacattcctgggggtggtt
ttgttctgcttcctcctcctgttcgtttggagtcgggggaaagggaagcataaaaacaac
atagatattgaatacgtacctcggtccaagtctaatggcacctctttagatggtggagca
gagggggaagctggaccccgtcgctttaacatgaaaatgatctaa
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