Oncorhynchus tshawytscha (Chinook salmon): 112256378
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Entry
112256378 CDS
T05605
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013
Nucleocytoplasmic transport
otw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112256378
03015 mRNA surveillance pathway
112256378
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112256378
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112256378
mRNA cycle factors
P-body specific factors
112256378
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
112256378
NCBI-ProteinID:
XP_024285357
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All DBs
Position
LG08:complement(49459664..49463447)
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AA seq
451 aa
AA seq
DB search
MKDGKENTRQREKRMEIKCENIEKIEKPKQEKKEVMTKIIIRRLPPSITKEELEEQLQPL
PEVDYLEFFSNDSSMYPHVFARAYINFKIQEDIVLFRDRFDGYVFVDNGGQEYPAIVEFA
PFQKIAKRSKKKDAKSGTIDEDADYKKFLEIYNGDDEKFTSTPETLLEEIEAKTKELVAK
KMTPLLDFLKNKQRIREEKKEERRRRELERKRLRDEERRKWREEDRRKRKEAEKFKKGDK
PSEKDKDQAKEVPKIKLLRKPDRGDDVEKLKKPEKDEMKDDRAPGCPDMTKRQNFETRGD
RVSRKADEDGHKDFRERDLERDRNRERDKERERRQKEKERIRRQDEDRRRRRERHDGENS
YRKREEEGKREKEDRVWEKRRGENAGDSASHTDKPKKSEEILREEKAKRDCLRNKDRPAI
QLYQPGARNRGGESHAGERKSERDQEKGVEG
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacggcaaggaaaatactcgtcagagggagaaaaggatggagataaaatgcgaa
aacattgaaaaaattgagaagccaaagcaggagaagaaagaagtaatgacgaagatcatt
atccgacgtctgcctccaagcataaccaaggaggaactggaggagcaattgcagccactt
ccagaagtggactacttagaatttttctccaatgacagcagcatgtacccccatgtcttc
gccagagcatacatcaacttcaagattcaggaagatattgtacttttcagagaccggttt
gatggatatgtgttcgttgataatggagggcaggagtatccagccattgttgaatttgct
ccttttcaaaagattgccaaaaggagtaagaaaaaggatgctaaaagtggaacaatagat
gaagatgctgattacaagaaattcctggagatttataatggtgatgatgaaaagtttaca
tccacccctgagactctactggaggaaatagaggctaaaacaaaggaactagtagctaag
aaaatgactcccctcttggacttcttaaagaacaaacagagaatccgtgaggaaaagaaa
gaggaaaggaggagacgagaactcgaacgtaagcgcctgagggacgaggaacgtcggaag
tggagggaggaggacaggagaaagcgcaaagaagcagagaagttcaagaaaggagacaaa
ccttctgagaaggataaagaccaagcgaaggaggtgccaaaaatcaagctcttgagaaaa
ccagacagaggagatgatgtggagaagttaaagaaacctgagaaggacgagatgaaagat
gacagagctccagggtgtcctgatatgacgaaacgccaaaacttcgaaaccaggggggac
agggtatcacggaaagctgatgaagatggacacaaagacttcagagagcgtgacctagaa
agggacagaaaccgcgaacgagacaaagagcgggagcggcgtcagaaagagaaggagcgc
atcagacgccaagacgaggataggcgaaggaggagggaaaggcacgatggagagaactcc
tacagaaagcgagaggaagaagggaaaagggagaaagaagatcgtgtctgggaaaagaga
aggggcgagaatgccggggactccgcaagccatactgataagcctaaaaagtcagaagaa
atcctgagggaggagaaagctaaaagagattgtttaagaaacaaggatcggcctgccatt
cagctataccagccaggtgccaggaaccgaggaggagaatctcatgctggggagcgaaag
tcagagcgagaccaagagaagggagttgaaggataa
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