Oncorhynchus tshawytscha (Chinook salmon): 112256429
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Entry
112256429 CDS
T05605
Name
(RefSeq) leucine-rich repeat and fibronectin type-III domain-containing protein 2
KO
K16355
leucine-rich repeat and fibronectin type-III domain-containing protein 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112256429
04990 Domain-containing proteins not elsewhere classified [BR:
otw04990
]
112256429
Cell adhesion molecules [BR:
otw04515
]
Immunoglobulin superfamily
SALM family
112256429
Domain-containing proteins not elsewhere classified [BR:
otw04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
112256429
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
I-set
Ig_3
LRR_4
ig
LRR_1
LRR_9
fn3
Ig_2
Ig_C17orf99
LRRCT
GP79
DUF3951
Sp38
Motif
Other DBs
NCBI-GeneID:
112256429
NCBI-ProteinID:
XP_024285460
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Position
LG08:complement(45440554..45462731)
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AA seq
797 aa
AA seq
DB search
MDKVLSSLLLLGTAVMMAHACPKYCVCQNLSESLGTLCPSKGLLFVPLDIDRRTVELRLG
GNFILKVTPQDFANMTGLVDLTLSRNTISAILPFSFLDLETLRSLHLDSNRLTELGPDDL
RGLVNLQHLILNNNQLNRISKVAFDDLMLTLEDLDLSYNNLRGVPWESICKMVNLHQLSL
DHNLISHIAEGTFTDLDKLARLDLTSNRLQKLPPDPIFTRSQTNLILTTPYAPQLSLSFG
GNPLHCNCEVLWLRRLDREDDMETCASPPSLKGRYFWSVREEEFVCEPPLITQHTHKLLV
LEGQTASLRCKAIGDPMPIIHWVAPDDRLISNSSRATVYDNGTLDITITTSKDYGTFTCI
AANAAGESTASIELSIIQLPHLSNGTNHTAQPKSRLSDITSSTKTSKGESKPLPEKVVSV
SEVSASSALVKWTVSKTAPKVKMYQLQYNCSEDEVLIYRMIPVASKTFLVTNLVQDMQYD
LCVLAIWDDTATTLTATNVVGCVQFITRDNYPQCQSLQSQFLGGTMILVIGGIIVVTLLI
FIIILMVRYKVCSSPHSSKLPVVSNTYSQTNSGSTQVKPQITTTVVVMRDEMVEFKCGSL
QSSLSSSSSDSLDSRKTRGRLGNEDQYSLRDIEFSTLPSTSNWRRDRGPSSSKARPNLDN
LLGAFASLELRSSATTRDQGASCSSTTTSSALVAVTMAPPSDKEPLLGRAESTTMLGRFL
GLPQEGKPKRSHSFDYGHVGSSGGAQSISNYPRHISNIWTKRSLSVNGMLLQYDDSEDGE
AEEVPFESSEWVMESTV
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atggacaaagtgctcagcagcctcctgcttctgggaactgcagtgatgatggcccatgca
tgccccaagtactgtgtctgccagaacctgtctgagtccctgggtaccctctgcccatcc
aaaggcttactcttcgtaccactggacatagaccggcggaccgtagagctccgcctgggc
ggcaacttcatcctcaaggtcacaccgcaggactttgccaatatgacgggcctggtggac
ctcaccttgtcccgcaacaccatcagtgccatcctgcctttctccttcctcgacctggag
accctgcgctccctgcacctggacagcaaccgcctgaccgagctgggaccggacgacctg
cgtggccttgtcaacctgcagcacctcatcctcaacaacaaccagctcaaccgcatctcc
aaggtggcttttgatgatctgatgctgacactggaagacctggacctgtcctacaacaac
ttgcggggtgtaccttgggagtccatctgcaagatggtcaacctccaccagttgagtctt
gatcataatctcatctcgcacatcgcagagggaacatttacggacctggacaagctggcg
cgcctggacctcacatccaaccgtctccagaagctcccgccagaccccatcttcacccgt
tcccagactaacttaatactgaccactccctacgcccctcagctttccctgagctttggg
ggaaaccccctgcattgcaactgtgaagtgctttggctccggaggctggacagagaggac
gatatggagacctgcgcttcccctcccagtctaaagggacgctacttttggtctgtgcgg
gaagaagagtttgtctgtgaaccgcccctgatcacccaacacacgcacaagttgttagtc
ctggagggccaaacagctagcctacgctgcaaagctatcggcgacccaatgccgatcata
cactgggtcgccccagacgaccgtttgattagcaattcgtccagagcgaccgtgtacgat
aacggcaccctggatattaccatcaccacgtccaaggattacggcaccttcacttgcatc
gcagccaacgcagcaggggaatcgactgcctctatagaactatccatcattcaactgcca
cacctcagcaatggtaccaaccacaccgcacagcccaagtcccggctctcggacatcacc
agctctaccaagaccagtaagggggagtccaagcctctaccggaaaaggtggtatctgta
tcggaggtgtctgcatcctctgctctggtcaagtggactgttagcaaaacagcacccaag
gtcaagatgtaccagctccagtacaactgctccgaagatgaagtcctgatttacaggatg
attcccgtggccagcaaaacctttttagtcaccaacctggtccaagacatgcagtacgac
ctatgtgtcctggctatctgggacgacaccgccaccaccctaactgccaccaacgtagtg
ggctgtgtgcagttcatcacccgtgacaactacccgcagtgccagtccctccaaagccag
ttcctgggcggcactatgatcctggtgataggtggcatcatcgtggtcacgctcctcatc
ttcatcatcatcctcatggttcggtacaaagtgtgcagcagcccccattccagtaagctg
ccagtggttagcaacacgtactcccagaccaacagtgggagtacgcaggtcaaacctcag
atcacaaccacagtggtggtaatgcgggatgagatggtggaattcaaatgtggctcgctc
cagagcagcctctcctcgtcttcatctgactcgttggacagtcgcaaaactagaggcaga
ttaggaaacgaggaccagtacagtcttcgagacatcgagttcagcacactccccagcacc
agtaattggaggagggacagggggccatcatcatccaaggctaggcccaacttggacaac
cttttaggggcttttgcctcactggagctccggagctcggctacgactagggaccaaggg
gcatcttgttcctccaccaccacctccagtgcattggtggctgtgaccatggcccctcca
tctgacaaagaacccttgctgggccgagccgagtccaccaccatgctggggcgttttcta
ggcctgccccaggaagggaagcccaagaggagccactcattcgactacggccacgtgggt
agcagcggtggcgcacagagcatcagcaactaccctcgtcacatcagcaacatctggact
aagaggagcctgtcggtaaacgggatgctactgcagtacgacgacagcgaagacggtgag
gccgaagaggtgccattcgagagctcagagtgggtgatggagagcactgtttga
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