Oncorhynchus tshawytscha (Chinook salmon): 112256575
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Entry
112256575 CDS
T05605
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112256575
03041 Spliceosome [BR:
otw03041
]
112256575
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112256575
Spliceosome [BR:
otw03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
112256575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
CDC45
DUF3525
Motif
Other DBs
NCBI-GeneID:
112256575
NCBI-ProteinID:
XP_024285672
LinkDB
All DBs
Position
LG08:34051408..34093440
Genome browser
AA seq
1526 aa
AA seq
DB search
MEAVKAFNGELFSLNEYKPPISKAKMTNITKSAIKAIKYYKHVVQGVEKFVQKCKPEYKV
PGLYVMDSIVRQSRHQFGQDKDVFAPRFSKNIIGTFQHLYRCPSDDKSKIVRVLNLWQKN
AVFKSDIIQPLLDMAAGLPPPSVTPVMTSRDAAVNTPGTPATPATPANIVSSLPDWASQF
SNTDTVAAVAQILQSPHGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQLTA
AATANPMQLNPLEQRISSFNKKMLGHFDFGNDSERSEDTKKDAQSSQMPMVSDSIFHQLA
EQLQQQNLEHFQKQLMEHQQKSMNMEGQDGIFGSENTAMPQQSSSQSQHPAPQNKTDDSI
DNQQQDMDLDDGPEMEEERFEPEDKKSKTVDTRSRTRSRSRSRSPRKRRSRSRSGSRKRK
HRKRSRSRSRERKRKSSRSYSSERQEAREREKERQKKGLPPIRSRFLSVCSTTLWVGQVD
KKASPQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYCARQKLSTGSFKVVSKIIK
IAWALNKGVKQEYKQFWDMDLGVTYIPWEKVKLDDLDGFAEGGMIDQETVNAEWEAAKNA
PEPMKEAVSQAVSVEPMTATNTQQTQQEAFSQQEAFSQQEAFSQQVSMMPVQLPVAQAVP
AVGLVPPSFPVSMAMPPPGYGPLPPFLRAGFNASQPPPGFMQTAGVPQQAGMGSAPISLV
PASMSQAQDSMKDSPYGATIPGSFMPSALPGQGVFNQLQPGVQTQQAANDKMGQSADGMD
AAAELVLQGMQNAMSRGMGLLGMHPSASLPHPLHQQGLPGQRMPGLMPLDLRPTMLQGAG
ARFPLLMQQGLSQQSLLEASLHAQARARAASQMERFNRAEEAFNRGPNPPNESMSKAEEE
PSSGADDSQQGGDQDYRFPPPQEKQSTGLLRTPPLEHRESMGGGAGGGGLGGGRPALLQT
PVREPARDSVAGRLQALAGFTPQTSSRWGPLRGDFDERDMRSSSAAVSKGFQEARPGSNQ
GQNFPNRFENQNRAGSVGGAGGGVCTGGPGGVGAGPAWSRGGVDAAVQFTDADMPQDLDE
CRRPWDRQQRDRDFDFRKEMNGNRRERDSREKERDRERERDRGRERGNREREQERDRERE
REKEREKDRERERERERNKRGAWTPLLPLPQPLLPTPTLTPTLSLTQGKPQALLHLQSKL
QPKPGLLTKPGLLQTPTLLTRSTSHVPTKSLLQAPSQSLLQAPSQSLLQAPSQSLLQAPS
QSLLQAPSQSLLQAPSQSPPLTSHQSSQSPPKAPPQFTQFPTQAKNEARPGPKPQAEFHS
SPQTHVSPKSESSPQTQSSPQNQSPPQNQASLQAQLLHPAHSPFQTKSPPQGQSSSRAQS
PPQALSPQAPRTPEEITDTQGEPEKPRWANESGKPQEEPMKEPEPMVEPPSRWVNGTGSR
MDTDAVAEPTTTPSPNLALSMSLVLTHSPVEPQCLPEPLDQQHPSQHVASCSSTKDVDNG
LSEPMEEAEKQPVVEKTDTEGTIITQ
NT seq
4581 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgtcaaagcattcaacggcgagctcttctcgttgaacgagtacaagcctcca
atctccaaggcgaaaatgaccaatattaccaagtctgcaataaaagctataaaatactac
aaacatgttgtccagggcgtggaaaaatttgttcagaaatgcaagccagagtataaggtc
ccaggcctgtatgtcatggactccatcgtgcggcagtcacggcaccagtttggccaggac
aaggatgtgtttgccccgcgcttcagcaaaaacatcatcggaaccttccaacatctctac
cgctgcccctcagatgacaagagtaagattgtcagggtcctcaacctctggcagaagaac
gcagtcttcaagagtgacatcatccagccgttgctcgacatggctgcaggacttccccct
cccagtgtcaccccagtcatgaccagccgcgatgctgcagtcaacacgcctggtacacca
gcgaccccagccaccccagccaacatcgtatccagtctgcctgactgggcgtcacagttc
tccaacacagacactgtagctgctgtggcccagatcctgcagagtccacacggccaacag
ctccagcagctggtgcagagcctgcaaatgcagcagcagaagccccagccatctctgctt
caggcgttggatgcaggactggtggtccagttgcaggctctgacggcccagctcactgca
gccgccacagccaaccccatgcagctcaaccccctggagcagaggatctcctccttcaac
aagaaaatgttgggccattttgactttgggaacgattcagaacgctctgaagacaccaaa
aaggacgcccaatcatcccagatgcccatggtgtctgactccatcttccaccagctggct
gagcagctgcagcagcagaacctggagcacttccagaagcagctcatggagcaccagcag
aagtccatgaacatggaagggcaggatggaatatttgggtctgagaacacggccatgccc
caacagagcagcagccaatcacagcacccggcgccgcaaaacaagacggatgactcaatt
gacaaccagcagcaggacatggacctggatgacgggccagagatggaggaagaacgcttc
gaaccagaggacaagaagtccaagacggtcgacacgcggtcaagaacacgttctaggtca
cgatcaagatctcccaggaagagacggtccagatcacggtcaggctctcggaaacggaaa
caccgtaagcggtcgcggtcacgctccagagagcggaagaggaagtcgtcgcggtcctac
tccagcgagagacaagaagcccgcgagcgagagaaagagcgccagaagaaaggactgcct
cccatccgatccaggtttctcagtgtgtgcagcaccactctgtgggtgggacaggtagac
aagaaggccagtccacaggacctcaccaacctgtttgaagagtttggtcagattgagtcg
atcaatatgatccctcctcgtggctgtgcctacatctgtatggtccacagacaggatgcc
tactgcgccagacagaaactcagcactggttcattcaaggtcgtctccaagattatcaag
attgcgtgggcgctgaataagggagtgaagcaggagtataagcagttctgggacatggac
ctgggggtcacctacatcccctgggagaaggtcaagttggacgacctggacggctttgct
gagggaggcatgatcgaccaggagactgtcaacgccgagtgggaagcagccaagaatgcg
ccagagccaatgaaggaagctgtgagccaggctgtgagcgttgaacccatgacggccacc
aacacccaacagacccaacaagaggctttcagccaacaggaggctttcagtcaacaggag
gccttcagccaacaggtctccatgatgcctgtacagctccctgtggctcaggctgtccct
gccgtgggtcttgtgcctccatccttccctgtttccatggcgatgcccccgccaggctat
ggccccctgccccccttcctcagagcgggtttcaacgcctcccagcctcctccaggtttc
atgcagacagcaggtgttcctcagcaagcaggcatgggctcagctcctatatctctggtg
ccggcctccatgtcgcaggctcaggacagcatgaaggactccccatacggagctactatc
ccgggaagcttcatgccctctgccctccctggacaaggggtcttcaaccagcttcaacct
ggagtccagacgcagcaagcagccaatgacaagatgggccaatctgctgacggcatggat
gcagctgcagagttagtactgcaaggtatgcagaatgcaatgagtcgtggtatgggtctt
ctggggatgcacccctcagcttcccttccccaccccctgcaccagcagggcctgcctggc
cagaggatgcctgggctgatgccgctggacctccggcctactatgctccagggtgccggt
gcccggttccccctcctgatgcagcagggcctgtcccaacagagcctcctggaagcgtcc
ctccatgcccaggcacgcgccagagcggcctcccagatggaacgcttcaacagggccgag
gaggccttcaaccgggggcccaaccccccaaacgaaagcatgtccaaggctgaggaggag
ccttcctctggagctgacgatagccagcagggaggggaccaagactaccgcttccctccg
ccccaggagaagcagagcacaggcctactgaggacccctcccctggagcacagagagtcc
atgggtggaggagctggtggtggcggtttgggcggaggcagacctgccctgctccagacc
ccagtgagagagccagctagagacagcgtggcagggcggcttcaggcccttgccggcttc
accccccagacctcgagtcgctgggggccactcagaggggactttgatgagcgtgacatg
cggagctcttcggccgcggtctccaagggcttccaggaagcgcgccctggctctaaccaa
gggcagaactttcccaaccgctttgagaaccagaaccgcgctggatcagtaggaggggca
ggaggaggagtatgtactggtggtcctggtggtgttggagcgggcccggcgtggagtcgt
ggtggagttgatgctgcagtacagttcactgatgctgacatgccccaggacttggatgag
tgccgacgcccttgggacaggcagcaacgggacagggactttgacttcaggaaggagatg
aatggcaaccggcgtgagagagacagccgtgagaaggagagggaccgcgagagagaaagg
gaccgtggccgggagcgtggcaaccgtgaacgagagcaggagcgtgaccgggagagagag
cgtgaaaaggagagggagaaggatcgggagagggaacgtgagagggaacgtaacaagcgt
ggagcctggacaccccttcttcctctaccacaacccctgctccctactcctaccctgacc
ccaaccctctccctgacccaaggcaaacctcaggccctgctgcacctacagtccaagctt
caacctaaacctggactcctaactaaaccgggtctgcttcaaactccaactctcctaact
cggtcaacatctcatgtcccaaccaagtctcttcttcaagccccatcccagtctcttctt
caagccccatcccagtctcttcttcaagccccatcccagtctctacttcaagccccatcc
cagtctcttcttcaagccccatcccagtctcttcttcaagccccatcccagtctccacct
ctaacctctcaccagtcatcccagtctccacctaaagctccaccccagttcacccagttt
ccaactcaagccaagaatgaagctcgccccggtcctaagccccaggcagagttccattcc
tctccccagacacatgtgtcccccaagtctgagtcctcaccccagacccaatcctctcct
cagaaccagtcaccaccccaaaaccaggcttcccttcaggcccagttgctgcaccctgcc
cattcccctttccagacaaagtcccctccccagggccagtcatcatcacgtgcacagtcc
ccaccccaggccttgtccccacaggccccccgcaccccagaggagatcactgacacccag
ggggagccagagaagccccggtgggccaacgagtcagggaaacctcaggaagaacctatg
aaagaacctgaacccatggtagaacctccatctcggtgggtcaatggaacagggtcgagg
atggacactgacgcagtggctgagcccaccactaccccgtcccccaatcttgccctctca
atgtcactggtcctcacacacagccccgtggagccccaatgcctgccggagcccctggac
cagcagcatccctcgcagcatgtcgcctcttgctcctccacaaaggatgtagacaatgga
ctgagtgagccgatggaggaagctgagaaacagccagtggtagagaaaacagacactgag
gggacaatcatcactcagtag
DBGET
integrated database retrieval system
