KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112256623
Entry
112256623         CDS       T05605                                 
Name
(RefSeq) histone-binding protein RBBP4 isoform X1
  KO
K10752  histone-binding protein RBBP4
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03082  ATP-dependent chromatin remodeling
otw03083  Polycomb repressive complex
otw04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    112256623
   03083 Polycomb repressive complex
    112256623
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    112256623
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:otw03036]
    112256623
Chromosome and associated proteins [BR:otw03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     112256623
  Histone modification proteins
   HAT complexes
    HATB complex
     112256623
   HDAC complexes
    Sin3A-HDAC complex
     112256623
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     112256623
    PRC2.2
     112256623
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     112256623
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    112256623
  Chromatin remodeling factors
   NuRD complex
    112256623
   NuRF complex
    112256623
   NuRF complex (fruit fly)
    112256623
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd WD40_CDC20-Fz WD40_Prp19 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_EML_2 WDR55 WD40_WDHD1_1st Beta-prop_WDR75_1st Beta-prop_EML WD40_MABP1-WDR62_2nd EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_DCAF12 Beta-prop_WDR19_1st WD40_RFWD3 ANAPC4_WD40 WD40_MABP1-WDR62_1st eIF2A Beta-prop_RIG_1st MIOS_WD40 Beta-prop_SPT8 Beta-prop_IFT140_1st Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 112256623
NCBI-ProteinID: XP_024285755
LinkDB
Position
LG08:32019935..32023468
AA seq 424 aa
MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD
FSVHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK
INHEGEVNRARHMPQNPCIIATKTPTSDVLVFDYTKHPSKPDPSGECTPDLRLRGHQKEG
YGLSWNPNLSGCLLSASDDHTICMWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE
SLFGSVADDQKLMIWDTRSNNTSKPSHAVDAHTAEVNCLSFNPYSEFILASGSADKTVAL
WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE
DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMEVWQMAENIYNDEDPEGAADT
EVQA
NT seq 1275 nt   +upstreamnt  +downstreamnt
atggctgataaggaagcagcgtttgatgatgctgtggaggagagggtgataaatgaggag
tacaagatatggaagaagaacacgcccttcctctatgacttggtgatgacccacgccctg
gagtggcctagcctcacagcacagtggctgcctgatgtcaccagaccggaggggaaggat
ttcagtgtacaccggctggttcttggcacacacacatcagatgaacagaatcacctggtc
attgccagcgtgcaactgcccaatgacgacgcgcagtttgatgcttctcactatgatagt
gagaaaggcgagtttggaggctttggctcagtcagcggtaagatagagattgaaatcaag
ataaaccatgagggagaggtgaacagagcccgccacatgccccagaacccctgcatcatc
gccaccaaaaccccaaccagtgatgtgcttgtctttgactacaccaaacatccctccaaa
ccagatccatctggagagtgcaccccagatctgcgtttgaggggacaccagaaggagggt
tacggtctctcctggaaccccaacctgagtggttgccttctcagtgcttctgatgaccat
acgatctgtatgtgggacatcagtgcagttcctaaggaggggaaggttgtggacgcgaag
accatcttcactggacacacagccgttgtggaggatgtttcttggcatctactgcacgag
tcgctctttggatctgtagctgatgaccagaaactcatgatttgggacacgcgatcaaac
aatacgtcgaaacccagccatgctgtggacgcccacactgcagaggtcaactgtctgtcc
ttcaacccttacagcgagttcatcctggcctcaggctcagcagacaagactgttgctctt
tgggacctgaggaacctgaaactgaagctgcattcatttgagtctcacaaagatgagatc
ttccaggtccagtggtctcctcataatgaaaccatccttgcctccagtggcacagacagg
cgactcaacgtgtgggacctcagtaaaatcggagaggagcagtcgccagaggatgctgag
gatggtccacctgaactgctgttcattcacggtggtcacacagctaagatctcagacttc
tcgtggaaccccaacgagccctgggtcatctgttcggtgtctgaggacaacatcatggaa
gtttggcagatggctgagaacatctacaatgacgaggacccagagggagcagcagacact
gaggtccaggcatga

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