Oncorhynchus tshawytscha (Chinook salmon): 112256795
Help
Entry
112256795 CDS
T05605
Symbol
nrde2
Name
(RefSeq) nuclear exosome regulator NRDE2 isoform X1
KO
K26109
nuclear exosome regulator NRDE2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112256795 (nrde2)
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
112256795 (nrde2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
TPR_14
GAGA_bind
tRNA_synt_1c_R2
Motif
Other DBs
NCBI-GeneID:
112256795
NCBI-ProteinID:
XP_024286072
LinkDB
All DBs
Position
LG08:21366065..21381885
Genome browser
AA seq
1193 aa
AA seq
DB search
MTSHSCDCLHAEAINMALFPAFAGLSNTKAEIAPKELEWLSNQSFRTDDALSLHQRATEK
ANETQSAETSRHVIPEREDKNDVQSNKKKKKEKKKKKKKKKKHKKKSGEPSPASSGSDSD
TIYPSDLLKKAESTPPSEEFQVEGSFVWLDDLQTPTDQPFCVDRRADRANWEYKSLYRGD
IARYKRKGSSSLGLNLRSQAVSWAESGPEKKRVDRRQRPNRYFSPTVRQLLMSDGKPTLP
RPPPEDTTTTTLPFIPVPSCLEGEAEGGGSAKGQGSWVNPLGVYDSSTSLWLQGKGKAEH
GKAEEQPSTPRDNAAIMLAERVEDFNRRLRETPTDTHTWLQFVLFQDEVAGAPGVFADIS
ENESERRKRSVRATLEKKVAILDRAVENNPSCVELKLERLRLCRELWEPAALLKEWKKLV
FLHPNSAPLWRKYLLFMQSHFSTFSVSKVNTVYGKCLSTLAAVQDGSMVSHQMLPGTDEH
MLAIFLQQCHFLRQAGHSEKAVCLFQGLLDFTFFKPDTVKDLPTRQQVEFFEPFWDSGEP
RVGERGASGWRAWMTQQERGGWLQPSEQDDGDEEDQEELEVKDKTWPKWRIWLDVETSRE
AIHWLPWRPDKTKGQSVEDCEDPDRQVLFDDIGPSMIRLVRPDLQLCLLLSFLHFLGLPA
DTSCYSAPSCSLLLDDQALLGDVHHPDSPLTSYALLVPGVSPVGHMTSLQGARRGVGLCK
QGEEFVDNVFQMVLPLFSAQERAVLSLHWIQYEKLKVLRCVRGRNKKRVKSQGKRSKRLA
KRLLKEPENRGRLSLWREYAHLEWLLGNLDEAHKVFDTALGLGVAGGLADPALCDLCLLY
AQLEVEEAWRRDTGGAGTTVTTAMSSPAVYILTKLAEGSSYAPFLGQLAPVAVLKARKAY
EQAVVSSLPGQEEGAAGQGQSKSRQVKGLVGCYALFQYLTVGVDAADAVYNLARKRLEQH
SSMSAQQSASSEVMCDIQTLSSVSECEALAVQQVALLRYHTSTNVYPLSHIRLALTSALA
HFASSTSLWQLYVQVENRYHSAGRARRFFHSVTKASTSVVPRLFAISAEQQRKQLVDSVQ
RSDCYGDTVSSLPENGLSNRIRSLFENAIATEHGVHCPLLWRMYMNFLVSEGKVEKGRGI
FYKALQDVPWAKGLYMDAVQLFPEHVQEFLDLMTEKELRLRVPMEEVDILLED
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcacattcatgcgactgtttacacgcagaggctatcaacatggcactatttcca
gcttttgctggattatcaaatacaaaagctgagattgcacctaaagaactagaatggctg
agcaatcaaagtttccgcactgatgacgctctctctcttcaccaacgagccactgagaaa
gccaacgaaacacaatcggcagaaacaagcagacatgttataccagagagggaggataag
aatgatgtccaatccaacaagaagaaaaagaaggagaagaagaagaagaagaagaaaaag
aagaagcacaagaagaagagtggagaaccctctccagcaagcagtggctcagattcggat
actatctaccccagtgacctcctaaaaaaggctgagagcactcctcccagtgaggagttt
caggtggaggggtcttttgtgtggttggatgacctacagacccccaccgatcagcccttc
tgcgtggacaggagagcagaccgtgccaactgggagtacaaatcactttacagaggagat
atcgctaggtacaaaaggaaaggctcttcctctctgggtttgaacctgcggtctcaggcc
gtgagctgggctgagtctggcccagagaagaagagagtggacaggagacagagacccaac
cgctacttctcccccaccgtccgccagctgctgatgtctgatggcaaacccacgctgccc
agacctccaccagaggacaccacaaccaccaccttacccttcatccctgtgccctcatgt
ctggaaggtgaggcagaggggggtggctctgccaaaggccagggctcctgggtcaacccc
ctgggggtgtatgactcctccacgtccctgtggctccaggggaaggggaaggcggagcat
ggcaaggcagaggaacaaccttctactcccagggacaatgctgccatcatgctggctgaa
cgggtggaggacttcaataggaggttgagggaaacccccacagacacacacacctggctt
cagtttgtcctcttccaggacgaggtagctggggcgcctggggtgtttgctgacatctct
gagaacgagagcgagcggcggaagaggtcagtgcgggccacgctggagaagaaggtagcc
attttggatcgagcagtggagaataacccgagctgcgtggaactgaagctggagcgactg
cggctctgtagggagctgtgggagccggcagccctgctgaaggagtggaaaaagctggtg
ttcctgcaccccaacagcgcccccctgtggaggaagtacctgctgttcatgcagagccac
ttcagtaccttctccgtgtcaaaggtcaacacggtatacgggaagtgtctgagcacgctg
gcggcggtgcaggatgggagcatggtttctcaccagatgctgccgggcactgatgaacac
atgctggccatcttcctccagcagtgtcatttcctcaggcaggctggccactcagagaaa
gctgtgtgtctgttccagggcctactggacttcaccttcttcaagccagacactgtcaag
gacctacccaccagacaacaggtggagttctttgagccattctgggacagtggggagccc
cgtgtcggggagagaggggccagtggatggagagcctggatgacccagcaggagagaggg
ggctggctccaacccagtgaacaagatgatggagatgaagaagatcaggaggaattggag
gtgaaggataaaacctggcccaagtggaggatctggttggatgtggagacgtcacgcgag
gccatccattggctgccatggaggccggacaaaaccaagggccaatcggtggaggactgt
gaggacccggaccgacaggtgctgtttgatgacattgggccgtctatgatccggctggtc
cgcccagacctccagctatgtcttcttctgtccttcctgcacttcctgggtctgcctgct
gacacttcctgttacagcgccccctcctgtagcctgctgctggatgatcaggctctactg
ggggatgttcaccaccctgactcaccactgacctcttatgccctccttgttcctggggtc
agccccgtgggtcacatgacctcactgcagggtgccaggaggggggtggggctgtgtaag
cagggggaggagtttgtagacaatgtgttccagatggttctgcctctgttctctgctcag
gagagagctgtcctctcactacactggatccagtatgaaaagctcaaggtgctgaggtgt
gtgcgcggcaggaacaagaagcgtgtgaaatcccaggggaagaggagcaagcgcctggcc
aagcgcctgctgaaggagccagagaaccggggccgcctcagcctgtggagggagtacgcc
cacctggagtggctgctagggaatttggacgaggcccacaaggtgttcgacacagccctg
ggactgggcgtggcaggagggctggcagaccctgccctgtgtgacctctgcctgctctac
gcccagctggaggtggaggaggcctggcgaagggatacgggcggggcagggacgactgtt
acgaccgccatgtcttcaccagcggtctatatcctcaccaagctagcagagggtagttcg
tatgcccccttcttgggacagttggctccagtggccgtgctgaaggccaggaaggcctat
gagcaggctgtggtgagctccctgcctgggcaggaggagggggctgcggggcaggggcaa
tccaagtccaggcaggtcaaaggtctggtggggtgttacgccctattccagtacctgact
gtgggggttgatgctgctgatgctgtctacaacctggccaggaagaggctggagcaacac
tccagtatgtcagcccagcagtcagctagcagtgaagttatgtgtgacatacagacactg
agttctgtctcggagtgtgaggccctggccgtccagcaggtggcgctgctgcgctaccac
accagcaccaacgtctacccacttagccatatcagactggcgctgacctcggccctggcc
cactttgcctccagcacgtctctgtggcagttgtatgtgcaggtggagaaccgctaccat
agcgctggcagggctcgccgcttcttccacagcgtgaccaaggctagtaccagtgtcgtg
ccacgtctgttcgccatcagcgcagagcagcaaaggaagcagctagtggactctgttcag
aggtctgattgctatggtgacaccgtctccagcctgccagagaacggcctgagcaaccgt
atccgctcgctgtttgagaatgccatagcaacagaacacggggtccactgtccgttgctg
tggaggatgtacatgaacttcctggtctcagaggggaaggtggagaagggaagaggtatc
ttctacaaggctctacaggacgtcccatgggcaaagggtttatacatggacgcggtgcaa
ctcttccctgagcacgtgcaggagttcctggacctgatgaccgagaaggagctcagactg
agggttcccatggaggaggtggacatactgctggaggactga
DBGET
integrated database retrieval system
