Oncorhynchus tshawytscha (Chinook salmon): 112256811
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Entry
112256811 CDS
T05605
Symbol
pnn
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013
Nucleocytoplasmic transport
otw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112256811 (pnn)
03015 mRNA surveillance pathway
112256811 (pnn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112256811 (pnn)
03041 Spliceosome [BR:
otw03041
]
112256811 (pnn)
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112256811 (pnn)
Spliceosome [BR:
otw03041
]
Complex C
Other components
EJC/TREX
112256811 (pnn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Aconitase_C
Motif
Other DBs
NCBI-GeneID:
112256811
NCBI-ProteinID:
XP_024286100
LinkDB
All DBs
Position
LG08:complement(20960250..20966282)
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AA seq
685 aa
AA seq
DB search
MAVAVGSLQAQLEKAKESLKNVDDNIRKLTGRDPNELRPGQARRPTIPGVGGRGRGINLL
RRGLSDIGGGPGGPPAKQRDIEGALLRLAGDQRARRDSRRDSDADDDDDVKKPALQSSVV
ATSKERTRRDLIQDQTMDERGKQRNRRMFGLLMGTLQKFKQESNVATDRQKKRIEIEQKL
EVQAEQERKKVEGERRELFDERRAKQTELKLLEQKVELAHLQEEWNEHNTKIVKYIRTKT
KPPIFYLPGRMCSATQKLFDESQKKMNVMFEERCEAFAEYLNKMEARPRRQSLRDNALGK
DLKKEEQEEGKPTGQVVKATGNRFNVEMEDEAILEGDVGAKRKEDRKKKPGEKVREQAPK
KGEQAPKKGENEENGQDIRIIEFREVEEQMEVTAVVREAEWQVGDQDKKMEDSLVIGGAE
VDNEKEAEQQQPVKVEKENKPLQNQDPTAVSDDQEKSFEMQPTEDEEPHTEVSIPLLSEP
NPSLEVSDGASIAPEVQIPLLEAGTEPLTTEQSQEADQGAMKQTVDVQPAQYDAAPKELE
PLIGESSRGRGKSKSKDKKVDGGGSSSSSSSSSGSSSSGSSGSSSGSSSRSSSSSRSSSS
SSSSSRSRSRGRKDRKHRRKPSERKKGGGDKSQKSSMASGRESKGSKEKGSKSDRKRTSS
EGCRSGKMSSRSDRDRKSDRKEKRR
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggcggtaggttctttgcaagcccagcttgagaaagctaaagagagtttgaaa
aatgtagacgataatatccgtaaattaactggccgggatcctaatgaattgagacctggc
caagctagaaggccaaccatcccaggcgttggaggtaggggacgaggaatcaacttgttg
agacgtggactctccgacattggtggaggacctggaggacccccagctaaacagagggac
attgaaggggcccttctgaggctggccggtgaccagcgagcgaggagagattcacgccgt
gacagtgacgctgatgatgatgacgatgtcaagaagccagcgttgcagtcatcagtagta
gctacctccaaggagcgtacgcgtcgagacctgattcaggatcagaccatggatgagagg
ggaaaacaaaggaatcgacgcatgtttggcctgttgatgggaacgttacagaaatttaag
caggaatctaatgtggcaacagataggcaaaagaaacgcattgagattgaacagaaattg
gaagttcaagctgaacaagaacgcaagaaagtagagggcgaaagacgagagctctttgat
gagaggcgtgccaagcagacagagctaaaactgttggaacagaaagtggagcttgctcac
ttgcaagaggagtggaatgagcacaatacaaaaattgtcaagtacatccgcacaaagacc
aagccacccatattctatctgcctgggaggatgtgctcagccactcagaagctctttgat
gagtcgcagaaaaaaatgaatgttatgtttgaggagagatgcgaggcgtttgccgagtat
ctgaataagatggaggctcggcctcgacgccagtctctgagggacaacgctctgggtaag
gacctgaagaaagaagaacaagaggagggtaagcccacgggtcaggtagtcaaagcgaca
ggtaatcggtttaatgtggagatggaggacgaggcaatactagagggggatgtgggtgca
aagcgtaaggaggacagaaagaaaaagccaggagagaaagtcagggagcaggcacctaag
aagggggagcaggcacctaagaagggggagaatgaggaaaatggtcaagacattagaata
atagagttcagagaggtggaagagcagatggaggttactgcagtggtgagggaggctgaa
tggcaggtcggggatcaggataagaagatggaggatagtttggtgataggtggggcagag
gtagataatgagaaggaagcagaacagcagcaaccggttaaggtagaaaaggaaaataag
ccgcttcagaatcaggaccccacagctgtgtcagacgaccaggagaaaagctttgaaatg
caaccaactgaagatgaagagccacatacagaagtgtccatacccctgctctcagagccc
aaccctagtctggaagtctctgatggagcatctatagcccccgaggttcagatccccctg
ctggaggctggaacagagcctctcacaacagagcagagccaagaggctgatcaaggtgca
atgaagcagactgttgatgtccagcctgcccagtatgatgctgcccccaaggagctggag
cctctgatcggggaatcaagcaggggacgtggaaagtccaagtcaaaggacaagaaggta
gatggtggtggcagcagtagctcctcaagtagctcttctggctcctcatccagcgggagc
tccggctcctctagcggctcctccagcaggagcagctcctccagcaggagcagctcctct
tccagctcctctagcaggagccgcagccgggggaggaaggacaggaagcacaggaggaag
ccgtccgagaggaagaagggaggtggtgacaagagccagaagtcgtccatggccagtggt
cgtgaatccaaaggttccaaagagaagggctctaagtctgacaggaagaggaccagctct
gaaggctgccggtcagggaagatgtcctctcgcagtgaccgggatcgcaagtctgatagg
aaggaaaaaagacgttaa
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