Oncorhynchus tshawytscha (Chinook salmon): 112256996
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Entry
112256996 CDS
T05605
Name
(RefSeq) protocadherin-11 X-linked-like
KO
K16498
protocadherin delta 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
112256996
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
otw01009
]
112256996
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112256996
Protein phosphatases and associated proteins [BR:
otw01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
112256996
Cell adhesion molecules [BR:
otw04515
]
Cadherins
Protocadherins
112256996
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
TMEM154
DUF6249
Motif
Other DBs
NCBI-GeneID:
112256996
NCBI-ProteinID:
XP_042182058
LinkDB
All DBs
Position
LG08:84611285..84648085
Genome browser
AA seq
1038 aa
AA seq
DB search
MIMDLAGQAHVLVVLLTCLVMLSLAQEKDYTVREEQPENVRIGNLRKDLDLNLDPDFKLT
SPLQFKPVYKTGDVPLVRVEANTGEIFTTAHRIDREKLCSGVFNEKRCFYEIEVAVLPDE
IFRLVKIRFLIEDINDNAPLFQSTVINISIPENTAINTRYPVPSAFDPDVGINGIQHYEL
VKSVSEFGLDIIETPEGDRWPQLIVQQSLDREQKDTFVMKIKVEDGGTPPKSSTAILQVT
ISDVNDNRPVFKDSEVEVNIPENAPIGTSVTQLHATDADLGSNAQIHFSFSNQISSSTKR
HFSIDSTTGLITVKQPLDREATPVHKLIVLASDGSSTPSRAAVIVNVTDINDNVPSIDTR
YIMNLVNGTVLLSENAPLNTKIALITVTDKDSDLNGKVTCYTDHDVPFRLKPVFNDQFLL
ETAAPLDYETTREYAIKIVASDSGKPPLNTSAMVLIKIKDENDNAPIFPQPEIQLSIPEN
NDPSTQLIKISAMDADSGHNAEIIYSLGPDAPDGFNIDRRSGILSVGKRLDREKQEKYSF
TVMARDNGSTSLQSNVTVRLIVQDLNDNSPAFTHPEYNFYVPENLPLYGTVGLITVTDSD
AGDNSVITLSILNGKDNFIIDPQTGVIKPNITFDRELQSSYTFMVKAIDGGQPPSTSYAK
VTINVVDVNDNRPVFVIPSSNYSYDLVQSTTSPGSVVTRVFAIDNDTGMNAELQYSFIGG
SPRGLFAIDKTTGNITLQEKIVSADQGLHRLVVKVKDLGQPESLHAIALIHLFINETVSN
ATFILEQLRKSLETPLDRNVGDSEVTPQANGYVIVVIAIIAGTMTVILVIFVTALVRCRQ
TPRHKVVQKGKQSGEWVSPNQENRQIKKKKKKKKRSPKSLLLNFVSIEESKPDDPSQEHI
NGTLDLPVELDEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPMAPNKH
HVIQELPLDNTFVVGCDSHSKCSSTSSDPYSVSECSCQGGFKTPGQIHTRQETALKPPLY
DTLCGSGTSRCHRIKINL
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgattatggacttagcaggtcaggctcatgtgttggtggtgttgctcacctgcctggtc
atgctgtccttggcccaagagaaggactacacggtgagggaggagcagcccgagaacgtc
cgcatcgggaacctgcggaaggacttggacctgaaccttgaccctgacttcaagctgacc
tcgccactgcagtttaagcctgtctacaaaacgggcgatgtgcctttggtgagggtagag
gccaacaccggggagatcttcaccacggctcaccgcatcgaccgcgagaagctctgctcg
ggagtattcaacgagaagcgctgcttctacgagatcgaggtcgccgttctgcctgacgag
atcttccgtctggttaagatccggttcctgattgaggacatcaatgacaacgctccactc
ttccagtccaccgtaataaacatctccatcccagagaacacagccatcaacacccggtac
cccgtgccctctgcatttgacccagatgtggggatcaatgggatccaacactatgaactt
gtcaagagtgtgagtgagtttggcctggacatcatcgagaccccagagggagacagatgg
cctcagctgatcgtccagcagagcctggaccgcgagcagaaggacaccttcgtcatgaag
atcaaggtggaggatggaggaacgccacccaagtccagcacggccatcctccaggtcacc
atctccgacgtcaacgacaatcgaccggtcttcaaggacagtgaggtggaggtgaacatc
cctgagaacgcccccataggaacctccgtcacccaactccacgctacagacgcagacctc
ggctccaacgcccagatccacttctccttctctaatcagatctcctcatccaccaagagg
catttttccatcgacagcaccaccgggctgatcactgtcaagcagcccttagaccgggag
gccactccagtccacaaactcattgtccttgccagcgatggcagctccaccccctccaga
gctgctgttatcgtcaacgtaacggacattaatgacaatgttccgtccatagacactcgg
tacataatgaaccttgtaaatggaacggttctactgtcggagaacgcacctctcaacaca
aaaatagccctaattacagtgacggacaaggactctgatctgaatggaaaagtgacttgt
tatactgaccacgatgttcctttcaggttaaagcccgtctttaatgaccagttcctgctg
gagactgcggcccccctagattacgaaacaaccagggaatatgcaattaagatagtagcg
tcggattctgggaagcctcctttgaacacttcagcgatggttttaattaaaattaaggat
gagaatgacaacgctcccatcttccctcagcctgagattcagctgtccataccagaaaac
aatgatccatccacgcagctcataaagatcagtgccatggatgcagacagcggacataat
gcagagattatttattctcttggccctgacgctcctgatgggtttaacatagatcgacgg
tcaggtatcctctccgttggaaaacgcctggacagagagaagcaggagaagtattcgttc
actgtcatggcgagggacaatgggtctacttccctgcagagcaatgtcacagtgaggtta
atagtgcaggacctcaacgacaacagcccagctttcacccatcctgagtataacttctac
gtgcctgagaacctgcctctgtacgggaccgtgggtctgatcaccgtcacagattcagac
gcaggtgacaactccgtcataacactgtccatcctgaacgggaaagacaatttcattatt
gatccccagaccggtgtgatcaaacccaacatcacatttgatagagagctgcaaagctca
tacacttttatggtgaaggctatagacggagggcaaccacccagcacttcatacgccaag
gtcaccataaacgttgtggatgtcaatgacaatcgacccgtttttgttattccctcgtcc
aactactcttacgatctggtccagtctaccaccagccctgggtctgtggtcaccagagtg
ttcgctattgacaatgacactggcatgaatgctgagctgcagtacagtttcattggggga
tcaccaagagggctgtttgccatagacaaaacaactggtaatataactctgcaggagaag
atagtctcagccgatcagggtttacacaggctagtggtgaaagtcaaagacctgggccag
ccagagtccttacatgcaatcgccctcattcacctcttcattaacgagactgtatccaac
gctacgttcattctagagcagctacgtaagagcttggagactccattggaccgtaacgtg
ggagacagtgaggtcacaccccaagccaacggatacgtgattgttgtcatcgcaattata
gctgggactatgacagttatcttagtcatcttcgtgacggcattggtgcgctgccgtcag
acgcccaggcacaaagtggtgcagaagggcaagcagagcggcgagtgggtgtcgcccaac
caggagaaccgtcaaatcaaaaagaaaaagaagaaaaagaagagatcccctaagagcctc
ctcttgaactttgtcagcatagaagaatccaagcctgatgatcccagccaggagcacatt
aatggaaccctggacctgcctgtggagctagatgagcagaccatggggaaatataactgg
gccactactccgaccaccttcaaacctgacagcccagacttagccaagcattacaagtct
gcctccccgcagccaaccttccaaatcaaaccagagaccccgatggcgcccaataaacac
cacgtgattcaggagctcccgctagacaacacgtttgtggtgggctgtgactcgcactcc
aagtgctcctccaccagctcagacccgtactcggtctcagagtgcagctgtcagggggga
ttcaagactcctgggcaaatccacaccagacaggagacggcactgaaaccacccctctat
gacacactctgtggctcaggtacaagtcgctgccacaggataaaaatcaatctctag
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integrated database retrieval system
