Oncorhynchus tshawytscha (Chinook salmon): 112257031
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Entry
112257031 CDS
T05605
Name
(RefSeq) AF4/FMR2 family member 2
KO
K15194
AF4/FMR2 family member 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112257031
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
112257031
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AF-4
AFF4_CHD
AF4_int
Motif
Other DBs
NCBI-GeneID:
112257031
NCBI-ProteinID:
XP_042182245
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All DBs
Position
LG08:complement(69648929..69985186)
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AA seq
1349 aa
AA seq
DB search
MDLFEFDFFRDWELEQQCHYEQDRNALKKREWERRTQEVQQDEDLFSSGFNLFGEPYKTE
APSLSTLGGTNNLNKTNKGDALANRVQNTLGNYDEMKELLTSHSNQSHLVGIPKNFVPQT
PGPMEKQDQPSFLTKGGQRGSNRVGTGNHTTSMPPPPSSSSLTSSSLLHGHQSSKKSWSS
DWSRGAHCSTQGVGGQGVGGQGVHGVGGLGVQGVGGPSCSRGKHSFTHEQQQQPQRHEEL
LISQGEVVDHRGDSSSSPSSSTSTLSRRHGSGQQQAPKAPSSAEHGSYKDSNTHVKSPLE
QEPGSHGASSPVASTSLLPSGLSTPTFPQGLHVKPSAVQQQKPTAYVRPMDGQDQMPLDS
PELKPPLEVVDVGYSNPAFGSTITSSKSKLPKLTLTQTGEVGLSSDSSCVEEILREMTHS
WPPPLTAIHTPGKAEQTRFPIPSKESQHIPSGCAGLKRCNVPVNKPATKSVPQKSMLEDD
LKISSDEEDTEQQAAEKPKPRSTPLSIPVATSRTSDPGHSSGASASSSESESSSESDSDS
ESSSSDSECNGASRTATPEPEPPSTNKWQLDKWLNKVTPHNKALISTQSERESHGLCSSQ
PDHSQQAPGSQDLAPGKSKPGPTVLLAQTDAKERALLSPIREKAKPKTGPKVSEGKSSKS
PAAVVVEPAPARRSIGKKQPKKVERSSSLEEHSSWSKPINPSISTTPKEKEPPPLLEPPK
SRTKGTSGKAAPRKEPRTTTTTTTTPAHPPPAPVLDKKKHRGPSRILPKSKEFIETESSS
SECHSEPEDLIKVPNPPCPGPSSLQTLKAANILSVSSLTSTCLTSISIPDPGVVGGLLED
PLLSPVPIVQNELLSPLRDFEDIKSLWVKIELSFLSRIPGQDPPEPPPVKVEPQEHWEPS
PKHRRQSPASQQSTPVEKPPSKAKRKHKSDHCNAVGGSKKLRLEKDSMLLPPCISPIHNH
KNISTKHSLRKQPRKRELLPPLLSPLSDEPPTRQRRTSECSSFSQEGGASGALLLPTLSC
SLPPFSSSSSSSSSHKHHSKGESKFFSHSKTSSEEDTHSKPSGSFHGNGQSDSDLWSNPS
SLSMDHMEPRRPKLTFNNKVHTADYYMQEAKKLKHKADALMEKYGKAVNYADGALSFIEC
GNAMERDPLEAKSPYTMYSETVELIRYAMRLKNFTSHSATVAEKKLAVLCNRCLSLLYLR
MFKLKKDHAVKYSRSLMEYFKNSAKSSQVPSPWGANGKNTGTPSPLSLSLSPVSWGSSSM
GTAGSGASGNVAIPQRIHQMAASHVNITNNILRSYEHWDTAEKLATESQEFFQELDSMME
PLSQHSSMIELVRYIRQGLHWLRIEAHLL
NT seq
4050 nt
NT seq
+upstream
nt +downstream
nt
atggacctattcgagtttgacttctttagggactgggaactggagcaacagtgtcattat
gagcaggaccgcaatgcgctcaagaagagggagtgggagcggcggactcaggaggtgcag
caggacgaagatctcttctcctctgggtttaatctctttggggagccatacaagacagaa
gcgcccagtctatccactttgggggggaccaacaacctaaacaagacaaacaaaggtgac
gccctggccaaccgggtgcagaacactctggggaactacgatgagatgaaggagctcctg
accagccactccaaccagagccacctggtgggcatccccaagaactttgttccccagacc
cctggccccatggagaagcaagaccagcccagcttcttaaccaagggaggccagaggggg
agcaacagggtgggcacagggaaccatacaacctccatgccccctcctccctcctcttct
tctctgaccagctccagcctgctgcacggccatcagagctccaagaagtcctggtcctcc
gactggtcccggggagcccactgcagcacccagggggtgggaggtcagggggttgggggc
cagggggtccatggggtggggggcctgggggtccagggggtggggggcccatcctgcagc
agggggaaacactccttcacccatgagcagcagcagcagccccaaagacacgaggagctg
ctcatctcacagggcgaggtagtggaccacaggggagactccagcagcagcccctcctcc
tccacatccactctctccaggaggcacgggagcgggcagcagcaggcccctaaggccccg
tcatcggccgagcatggcagctacaaggacagcaacactcatgttaagtctcccttggag
caggagccgggctcccacggggccagttccccagtggcctctacctccctgctgcccagt
ggcctctccacgcccaccttcccgcagggtctgcacgtcaagcccagcgccgtgcagcag
caaaagcctacggcctacgtgcggccaatggacggccaggaccagatgcccctggactcc
ccggagctcaagcctcctctggaggtggtggacgtgggctacagcaacccagcttttggc
agcaccatcaccagctccaagagcaagctgcccaagctgaccctgacacagactggggag
gtcggcctgtccagtgactccagctgtgtggaggagattctacgggagatgacccactcc
tggcctcctcccctgactgccatccacactccaggcaaggctgagcaaacccggttccct
attccctccaaggagtcacaacacataccctcaggatgcgctggactaaagcggtgcaat
gttcccgttaacaagcctgcaaccaagtctgtgccacagaagtcaatgcttgaggatgac
ctgaagatcagcagtgacgaggaagatactgaacagcaggcagcggagaagcccaagccc
agaagtacacctctcagcatccctgtggccacgtctcggaccagtgacccgggccactct
agtggcgcctcggccagctccagtgaatcagagagcagctccgagtcggattcagacagt
gagagcagctccagtgacagcgagtgtaacggggcctcccggaccgccaccccagagcct
gaacctccatcaacaaacaaatggcagctggataagtggctgaacaaagtgaccccacac
aataaagcacttatcagtacccagtcagagagagagagccatgggctctgcagctcccag
cctgaccacagccagcaggcacctgggagccaggacttggccccaggaaagagcaagcct
gggcccaccgtcctgctggcccagaccgacgccaaggaacgggccctcctcagccccatc
cgagagaaggccaagcccaagactggaccaaaggtctcagaggggaagagttcaaagtcc
ccagcagcggtggtggtggagccggccccagccagacgcagcattggaaagaagcagcca
aagaaagtggagcgctcatccagcctggaagaacacagctcctggtccaagcccatcaac
ccctccatcagcactacccctaaggagaaggagcctccgcctcttctggagccgcccaag
tccaggaccaagggcaccagtgggaaagctgcccctaggaaggaacctcgcaccaccact
accacgacaactactccagctcatcctcccccagccccagtcctggacaagaagaagcac
agggggcccagcaggatcctccccaagtccaaggagttcatcgagacggagtcttcgtcg
tctgagtgccactctgaaccagaggatctgatcaaggtccctaaccctccctgcccaggt
cccagcagcctgcagactctcaaagcagccaatatcctgagtgtcagtagccttaccagc
acctgcctcacttccatctctatcccagaccctggtgtggttgggggcttattggaagac
cccctcttgtcccctgtccccattgtccagaacgaactgttgtcccccctcagggacttt
gaggacatcaagtcactgtgggtgaagatcgagctgagcttcctgtctagaatcccagga
caggacccccctgagccccctcctgtgaaggttgagccccaggaacactgggagcccagc
cccaagcacagacgccagtcccccgccagtcagcagtctacccctgttgagaaaccccct
agcaaggccaagaggaaacacaagtcggaccattgtaacgctgtcggcgggagcaagaag
ttacggttggagaaagactccatgcttcttcccccgtgcatctcacccattcacaaccac
aagaacattagcacaaaacactctctgaggaaacagcccaggaagagagagctgctgcct
cccctgctgtcgcccctctctgacgagcctcccacccgccagcgcagaaccagcgagtgt
tcctccttcagccaggagggcggcgctagcggcgccttattactacccaccctcagctgc
tctctgccccccttctcctcctcctcatcctcctcttcctcacacaagcaccacagcaaa
ggagagagcaaattcttctcacattccaagacaagcagtgaggaagatacccacagcaaa
ccatctggcagtttccatggtaacggtcagtctgattccgacctttggtccaacccctca
tctctgtccatggaccacatggagccaagaagaccgaagctaacgttcaataacaaagtt
cacactgcagactactacatgcaggaagccaagaaactgaagcacaaagcagatgcactg
atggagaagtatggcaaagctgttaactacgctgatggggcgctgtcgttcatagaatgt
ggcaacgccatggaacgggacccactggaggccaagtctccatacactatgtactctgag
acagttgaactcatcagatatgccatgaggttaaagaactttacaagtcactcagcaaca
gtagccgagaagaaattagctgtattgtgcaatcgctgtttatccctcctgtacttgaga
atgttcaaactaaagaaggaccatgcagtaaagtattcccgttccctgatggagtatttc
aagaactcggctaaaagttcccaagtaccttcgccatggggagccaatggaaagaacact
ggcaccccatcgcccctgtctctgagtctctccccagtcagttggggcagcagcagtatg
ggcactgcgggctccggggcctccggcaacgtggccatcccccagcgcattcaccagatg
gccgccagccacgtcaacattaccaacaacattctccggagctatgagcactgggacaca
gcagaaaagttggccacagagagccaagagttctttcaggagctggactcaatgatggaa
ccgttgagccaacacagcagcatgatagaacttgtgcgctacatacgtcaaggactgcac
tggctacggatagaggcccacttgttatag
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