Oncorhynchus tshawytscha (Chinook salmon): 112257104
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Entry
112257104 CDS
T05605
Symbol
vimr2
Name
(RefSeq) alpha-internexin
KO
K07606
vimentin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
112257104 (vimr2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112257104 (vimr2)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
otw04812
]
112257104 (vimr2)
04147 Exosome [BR:
otw04147
]
112257104 (vimr2)
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Factors that have mRNA localization signals
112257104 (vimr2)
Cytoskeleton proteins [BR:
otw04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
112257104 (vimr2)
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
112257104 (vimr2)
Exosomal proteins of other cancer cells
112257104 (vimr2)
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Gene cluster
GFIT
Motif
Pfam:
Filament
DivIC
PI3K_P85_iSH2
TPR_MLP1_2
FlxA
Motif
Other DBs
NCBI-GeneID:
112257104
NCBI-ProteinID:
XP_042181539
UniProt:
A0A8C8JZ05
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All DBs
Position
LG08:49678780..49699256
Genome browser
AA seq
393 aa
AA seq
DB search
MAMLRVSSYRRQFEEQWSRNGRSGGGCGGQYSSSAVKARGAAAEECTCVQLDFVAAKMLN
KESLVRFAKDRSIIAALNDRFVALINMARCFEEDNESLEAQICELEERMTGQQTTSTTVA
VPEYSLDAVMERLRKERDQSLFDVEELRRELECLQEQYEETVQQRTLVQLEQEDVGLEVD
VVTTDCLALREQVKIYEEQLAHMEAQHETTVQNMVAPVEGPAAAGRGVLEFCNPDIKSAL
IDIKENYSQLAETIQCECRETGAVVAGAVVAIGAGKELTVARPAGVTGVGQITDISELKK
LIAELEKELAELEKCGEELEDEIEMKREAYVEEIFELECRLEEMRRQQHELQVQMREQCD
DYEELLGQKMAREIEIAAYRGLVEEEDERLCYL
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atggccatgctgagagtgtcgtcctaccgccggcagtttgaggagcagtggagtcggaat
ggacggtccggcggaggctgtggagggcagtacagctcctcagcggtcaaggccaggggt
gcggctgctgaggagtgtacgtgtgtccagctggactttgtggctgccaagatgctcaat
aaggagagtctggtccgattcgctaaagaccgcagcatcattgccgccctaaatgatcgc
tttgtcgccctcatcaacatggcacgctgctttgaggaggacaatgagtctctggaggcc
cagatctgtgagctggaggagaggatgaccggccaacagaccacctccactaccgtagct
gtcccagaatacagcctggacgccgtgatggagagactgcgcaaggagagggaccagagc
ctgtttgatgtggaggagctgaggagagagctggagtgtctgcaggagcagtatgaggag
accgttcagcagaggaccctcgtccaactggaacaggaagacgttggcctggaagtggat
gtagtgaccacagactgtctggccctgagggagcaggtgaaaatctatgaggaacaactg
gctcacatggaggcacagcatgagacgacggttcagaacatggttgcccctgtagagggt
ccagctgcagcagggagaggagtcctggagttctgcaaccctgacatcaagtcagccctc
atagatatcaaggagaactacagtcagctggctgagaccatccagtgtgagtgcagggaa
actggtgcggttgttgccggtgctgttgtcgccattggagctggaaaggagctgacggtg
gccagacctgcgggggtcacaggcgttggccaaataacggacatcagcgaactgaagaaa
ctgattgcagagcttgaaaaggagcttgcagagctggagaagtgtggtgaggagctggaa
gatgagattgagatgaagagagaagcgtatgtggaggagatctttgagctggagtgtcgt
cttgaggagatgcggaggcagcagcatgaactgcaggtccagatgagggaacaatgtgat
gactacgaggagctgctgggtcagaagatggcccgggaaatcgagatcgctgcctacaga
ggtttggtggaagaggaggatgagaggctttgctacctgtga
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