Oncorhynchus tshawytscha (Chinook salmon): 112257188
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Entry
112257188 CDS
T05605
Symbol
rp1l1a
Name
(RefSeq) retinitis pigmentosa 1-like 1 protein
KO
K19538
retinitis pigmentosa 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
otw03037
]
112257188 (rp1l1a)
04812 Cytoskeleton proteins [BR:
otw04812
]
112257188 (rp1l1a)
Cilium and associated proteins [BR:
otw03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
112257188 (rp1l1a)
Cytoskeleton proteins [BR:
otw04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule-associated proteins (MAPs)
112257188 (rp1l1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCX
Motif
Other DBs
NCBI-GeneID:
112257188
NCBI-ProteinID:
XP_042182171
LinkDB
All DBs
Position
LG08:complement(8462438..8477122)
Genome browser
AA seq
2466 aa
AA seq
DB search
MQSAPAGLWDPHGPQSKDVSSLPVHTPSASRLSHVIAALPTKRITFYKSGDAKFAGVRMA
VHKRSFKCFDALLDDLSQKVPLPFGVRTVTTPRGIHSIKHLEQLEDGGCYLCSDRRQAKP
INMELAGKRPALWHHNSRRVPQRPAEDPPPPSAPSHTPTRQRRILLVRNSDPAVRRSVIL
SRRSARSLRVFLEGISEIMQCHVRKLYTLEGRKIDSAQSLMTCPGVLVCVGREPFRPLLL
NYVAKHSEEKLPGLGTRSPVSGARSPGTGARSPRNGQGARSRSSVCSEGHGSKKNVNFGL
ETKKTIIHPLSDSSNRSTRFSLSSDKSYPNGLSSQGGKEAVLNDDIEKRVLVNKDGSLSV
EMRVRFRLHNDERLQWSTEIKKSPSDSLTNDCCPLREAPPCFLQQGQSESCSDPDSASCV
VEAADYTPKPPQRSLEEPQSHYACCFQRQEYDLWENPAHIQTSKHSHSRVRHTHSSSSSS
SCRSSKLVRRRATHRECSELGRVVHGMVEVCTVSSSCSHSELNLGATDNQGEERPLSSSS
HVLQALQDDVDDLPPSVSRCCHSNEPPQALPLTPQPPNPMSTSPRSRKHTPALQGEERGS
KTSSRRSSNSCSCCRGEVTPKADEERVDSSLSKASHASHRSRSPSNRISIPVAPEEGDDE
AEQGGKRAVSISGGSGESIGSHIGQSDLKKKRRRRGQGEDSQVAQMTKQMGPPKLQRGRL
PDQNQTSLRIQEQQRQRTEEPVSCEGEEEEVGEKTEERLESSMSVRSNLSAKSRRSCKST
CSKAEQVLSANSPEVPATEPEPTGEDEGEERATISTSVKSNLSAKSSRSHSPKPAASETL
VNDPADADAAGALSAKTNASAKSRRSCKSTGDDEREEREARATSAKTRASIKFSRTHKSA
CKAASTKPAACETPVNDPEEKTEEEKTASALSAKTSASVRSSRSHKSTCSRSVRAETPVA
KDIPAIETTEGDENGSAAAGETEERPASAILDNNNASVKSSISHKSTCSKAERAPSSNSP
EVPATEPEPTGDDEGEKRAASATSKSSRSLQSTCSRNVWAETPGTKDIPVITTTGGEEMV
DDTTAAGDTEERPPSAISAKTSASVKSSRSHKSTCSRRAESRRSQPADLPVIETTGREEV
GEEKERADSVMSAKSNASAMSRKSNRPTCNGSSRAVSPVAQDVPAIETTGGKEQRDKSTA
SVKTNRSHKSSSASQANAKSTNHTPPTTTETKEESQSHATSRPASTAAHRDDDVRDHVTE
KKAPSVHSKSPAKAEGDSRAASFARSTRSKVKVQKASEAQDDEMPETRASFLQVKGHRVK
AQSDTGSVHSVKTSKTDKIVIKGNSKPKSAQAGNPTSQSFNPPEGSRPAIQLGTASVSDS
LLSQSLSAADLLRGNMATSRLSSPAGSKVSIPDSGKSGKSGSSQRRRKLKQEEAELEELG
PLCLPKTSPNDIVSDWLRGIPADSGMDNPEDEMNEGIEETEEEEEEEEQENTAETGQREE
EEEQENTAETGQEEEEEEQENTAETGQQEEEEEQENTAETGQQEEEEEQENMAKTGQREE
EEEQENTAETGQQEEEEEQENTAETGQQEEEEEQENMAKTGQREEEEEQENTAETGQEEE
EEEEEEEQENTAETGQQEEEEEQENMAKTGQREEEEEQENTAETGQEEEEEEEEEEQENT
AETGQQEEEEEQENTAETGQQEEEQENTAETGQQEEEEEQENMAETGQEEEEQENTAETG
QQDEEVKKAARQPEEEGEISPVYGRRLSSSAKGLLDCLAQLQLIDPPPSPAAAPGPDRDQ
RYQEVMDILESLWLSKPDLEKRKEGETEEKERLKDSGVDLSSGSAGSGGSGKTRPDETGG
EGETDGGGEGETYGRGEEATSAELLSDAATPDIASQVRSSPGEDESPPESPPRTGEMLQT
LERLKTPGSPSSSDSTAYKSPTDTETDTPEDTPSSGTPPSVQRPLLTKRISQDPDPVWVL
NLLKKLEKQFMTHYVDAMAELKVRWDLDNNVMLDTMITELRDEVKKRIQMSIDRELRKIR
GRAGRGPRPPNMSRESTITDQRRRRLKVMKVQSVNESDGEQGSGDVSDQRSEDEYCPCDA
CIRKKAEDKAIKMEAVVAKAPVMMAFDLRKILQMKKDPESPVPPRPTQGKNNDKLEEEEE
EQVGNLEVVHEDEEEEETKEDIIPTVIEEDISEKEEEGVTGGEEEGQESHRAESLMGEVG
EEIAEEIGAEEQEEDGVVEGTEDEEEEAGEGETGCESAGEDGVEGAETGEGEELVEGEEE
EAGEAEAGDQEKDGGDEAGDQEEAAGDEETGVAGETGGEGGTGGEEETPEEETEGNVGVS
AEDEEEGGEEEVQLNAVVEFNPEDEEGEEMEGNREIPLIHQMTRTSVESQPGSMENTNPE
PRASDPVSQMCSLTLIEPNETVSDGHQMASAGEGSGGKGQRRSRSPARIKRRKPKESGIE
LDVLDL
NT seq
7401 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcggctccagcaggtttgtgggacccccatggaccccagtctaaagatgtctcc
tctctccccgtacacacaccctccgcctctcgcctctcccatgtgatcgctgcactaccg
actaagagaatcaccttctacaagagcggcgacgctaagtttgcgggagtgaggatggcc
gtccacaaacgcagcttcaaatgcttcgacgcactactggacgacctgtcgcagaaggtg
cccctgccgtttggagtacgtacagtcaccacccccagaggaatccacagtattaaacat
ctagagcagctggaggacggtgggtgctacctctgctctgacagacggcaggctaaacca
atcaacatggagctggctggcaaacgtcccgccctctggcaccacaacagtcgaagagtg
ccacagcgaccagcagaagaccctcctcctcccagtgctccaagccacacccctacacgg
cagcgacgcatcctattggtcaggaacagcgaccctgcagtgaggaggagtgtgattctg
agtcgccgctcggcccggagcctccgagtgtttctggagggcatctcggaaattatgcag
tgtcacgtcaggaaattatacacgctagagggacgcaagattgacagtgcacagagcctg
atgacgtgtccaggtgtgttggtgtgtgtaggtcgagagcccttcagacctctactcctg
aactatgtagccaagcactctgaggagaaactacctggactggggacgcggtcacctgtc
agtggggcccggtctcccggtactggggcccggtcacctcgtaatggtcagggagctcgg
tcacggtctagtgtctgcagcgaaggacatggcagcaagaagaatgtgaactttggtctg
gagactaagaagaccatcatccatcctctctcagactcttccaaccgctccacccgcttc
tctctgtcctctgacaagtcctaccctaatggcctcagcagccaaggtggcaaggaggcg
gtgcttaacgatgacatagagaagcgggtactggtgaacaaagacggcagcctgtctgta
gagatgagggtgcggtttcgtctccataacgacgagaggctccagtggtccacggagatt
aagaagtctccctctgactctctgaccaatgactgctgtcccctcagggaagccccgccc
tgcttcctacagcaaggccaatcagaaagctgctcagaccctgactccgcctcctgtgtt
gttgaagctgctgactacacccccaagcctccacagcgctccctggaggagccacagtca
cattatgcctgctgcttccaaagacaggagtatgacctttgggagaaccccgcccacatc
cagacttctaagcactcacactccagggttagacacacccactcctcaagctcctcctcc
tcctgccgctccagcaagttggtgaggaggcgtgcgacccacagggagtgctcagagctc
ggaagggttgtccatggaatggtggaggtgtgtacagtcagcagcagctgtagccacagc
gagcttaacctgggtgccacagacaaccagggggaggagcgtcctctgtctagctcctcc
catgtgctccaagcacttcaggacgatgtggatgacctccctcccagcgtctcacgctgc
tgccatagcaacgaacccccacaagccctccccttgaccccacagcctcccaaccctatg
tctacctcccccaggagcagaaaacacacccctgccctacagggagaggagagggggagc
aaaacctcctcccggcgttctagtaattcgtgctcctgctgcagaggagaagtcacccct
aaggccgacgaggagagagtggacagctcgttgtcgaaggccagccacgcttcccacaga
tccagatctccctccaatagaatcagtatccctgtggctccagaggagggagatgatgaa
gctgagcagggtgggaagagggcagtcagcatctccggtggctcaggggagtccattgga
agtcacataggtcaaagcgatctcaagaagaagaggaggaggagaggtcagggagaggac
tctcaggtggctcagatgacaaagcagatgggtccaccaaagcttcagagagggcgtctc
ccagatcagaaccagacgtcgctgaggatacaggagcagcagagacagaggacagaggag
ccagtgtcatgtgaaggtgaagaggaagaagtgggagagaaaacagaggagaggttagag
agctccatgtctgttagatctaacctctcagcaaagtctcgtaggtcctgtaagtctacc
tgtagcaaagcagaacaggtcctttccgccaactcaccagaggtaccagctactgaacct
gaacctactggagaggatgagggagaggagagagcaacgatctccacgtctgttaaatct
aacctctcagccaagtccagcaggtctcattctccaaaaccagcagcgagtgaaactcta
gtcaacgatccagcagacgcggatgcagcgggtgcattgtcagctaaaaccaatgcttca
gcaaagtcccgtaggtcttgtaagtctacaggagatgatgagagagaggagagagaagca
agagccacgtcagctaaaacgagggcttctatcaagttcagcaggacccacaagtctgcc
tgtaaagctgcctctacaaagccagccgcatgtgaaactcctgtcaacgatccagaggag
aaaacagaggaagagaagacagcgagtgcattgtcagctaaaaccagtgcttctgtcaga
tctagcaggtctcacaagtctacctgtagtaggagtgttagggctgagacacctgttgct
aaagacatccctgctattgaaacaacagagggagatgagaatggatctgctgctgccgga
gaaacagaggagagaccagcgagcgccattttggataacaataatgcctcagtgaaatct
agcatatctcacaagtctacctgcagcaaagcagaacgggccccttcctccaactcacca
gaggtgccagcgactgagcctgaacctactggagatgatgagggagagaagagagcagca
agtgccacgtcaaagtccagcaggtccctccagtctacctgcagtaggaatgtctgggct
gagactccggggactaaagacatccctgttattacgacgacagggggagaggagatggtt
gacgatacaactgctgctggagacacagaggagagaccgccgagcgccatctcagctaaa
accagtgcttcagtcaagtccagcaggtctcataaatctacctgcagcaggagggctgag
agtcgcagatctcaaccagccgatctccctgttattgaaacaacaggaagagaagaggtc
ggagaggagaaagagagagcagacagtgtcatgtcagctaaatctaacgcttcagcaatg
tcccgcaagtctaacaggcccacctgtaatggaagtagtagagcagtctctccagtggct
caagatgttcctgctatcgagacgacaggtggaaaagaacagagagacaaatccaccgcc
tctgtcaagaccaacaggtctcataagtcgtccagtgcatcacaggccaatgctaaatcc
accaatcatacaccgcctaccaccaccgagaccaaagaggagtctcaaagtcatgccacg
agccgacctgccagcacggctgcacacagagacgatgatgtcagagatcatgtcacagag
aagaaagctcccagcgtacattctaagagccctgctaaagcagaaggagactcaagagcg
gcttccttcgcccgctccaccaggtcgaaggtgaaagtccagaaggccagcgaggcccag
gacgatgagatgccagagacaagggcttccttcctgcaagtgaaaggtcacagggtcaaa
gctcagagtgacacaggcagcgttcactccgtgaaaacctccaaaacggataagattgtg
ataaaagggaattccaagccaaagtcggcccaagcgggaaaccctacctcccagtccttc
aatccccctgagggctccagacccgccatccagctgggtacggccagcgtcagcgatagt
ctcctctcccagtccctgtctgcagctgacctgctcagggggaacatggccacctcgcgc
ctctccagccctgcagggtcaaaggttagcatccctgatagtgggaagagtgggaagagt
gggagtagccagaggaggaggaagctcaagcaggaagaggcagagctagaggagctgggt
cccctctgtctgcccaaaacctcacccaatgacattgtcagtgattggctgagaggcatc
cctgctgacagcggcatggataaccctgaagatgaaatgaacgagggaattgaagagaca
gaagaagaggaagaggaagaggagcaggagaacacggctgaaacaggacaacgggaagag
gaagaggagcaggagaacacggctgaaacaggacaagaggaagaggaagaggagcaggag
aacacggctgaaacaggacaacaggaagaggaagaggagcaggagaacacggctgaaaca
ggacaacaggaagaggaagaggagcaggagaacatggctaaaacaggacaacgggaagag
gaagaggagcaggagaacacggctgaaacaggacaacaagaagaggaagaggagcaggag
aacacggctgaaacaggacaacaggaagaggaagaggagcaggagaacatggctaaaaca
ggacaacgggaagaggaagaggagcaggagaacacggctgaaacaggacaagaggaagag
gaagaggaagaggaagaggagcaggagaacacggctgaaacaggacaacaggaagaggaa
gaggagcaggagaacatggctaaaacaggacaacgggaagaggaagaggagcaggagaac
acggctgaaacaggacaagaggaagaggaagaggaagaggaagaggagcaggagaacacg
gctgaaacaggacaacaagaagaggaagaggagcaggagaacacggctgaaacaggacaa
caggaagaggagcaggagaacacagctgaaacaggacaacaggaagaggaagaggagcag
gagaacatggctgaaacaggacaagaggaagaggagcaggagaacacggctgaaacagga
caacaggatgaggaagtaaagaaggctgcccggcaaccagaggaagagggagagataagt
ccagtgtacggacgcagactgagctcctctgctaaaggtctgctggactgtctggcccag
ctgcagctcatcgacccacccccttctccagctgcagccccaggccctgaccgggatcag
cggtaccaagaggtcatggatatactagagtcactgtggctgtctaagcctgacctcgag
aagaggaaggagggagagacagaggagaaggagaggctaaaagattctggtgtggacctg
agcagcggctcagcagggtctgggggttctgggaagaccagaccagatgaaacaggagga
gagggagagacagatggaggaggagagggagagacatatggaagaggagaggaagcaaca
tcagcagagctgctttcagacgcggctaccccagacatcgccagccaagtgcggagcagc
ccaggggaggatgagtcgcccccagagtcgcccccacggacaggtgagatgctgcagacc
cttgagagactcaaaaccccagggagcccatcctcttcagacagcacagcctacaaatcc
cccactgacacagagacagacaccccggaggacacccccagctcagggacacccccgtca
gtccaacgaccgctgctcaccaagcgtatctcccaggaccctgacccggtctgggttctc
aacctgctgaagaagctggagaaacagttcatgacccactacgtggatgccatggccgag
ttaaaggtgcgttgggacctagacaacaatgtgatgttggacactatgatcactgagctg
agagatgaggtgaagaagaggatccagatgagcattgatcgtgaactgaggaagattcgg
ggacgggcgggccgggggccgcgaccccctaacatgtcccgggagtcaaccataacagac
cagaggaggcggaggttgaaggtcatgaaggtccagtcggtaaacgagagtgatggagag
cagggttcaggcgatgttagcgaccagcgcagcgaggacgagtactgtccctgcgacgcc
tgcatacggaaaaaggcggaggacaaggcaatcaaaatggaggctgtggttgccaaggcg
ccggtgatgatggcgtttgatctgcgtaagatcctgcagatgaagaaagacccagagtct
ccggtgccccctagacccacacaggggaagaacaatgacaaactggaagaggaggaggag
gaacaggttgggaatctagaggtggtacacgaagacgaggaagaggaggagacaaaggag
gatattataccaactgttatagaggaagatatctctgagaaggaagaggaaggagtgact
gggggagaggaggagggacaggagagtcacagagctgagtctctgatgggtgaagtaggg
gaggaaatagctgaggagataggggctgaagaacaggaggaggatggagtggtagaggga
actgaggatgaggaggaagaggcaggggaaggagagacggggtgtgaaagtgcaggagaa
gatggtgtggagggggcggagactggagaaggggaggagttagtagaaggggaggaggaa
gaagcaggggaagctgaagcaggagatcaggaaaaagatggaggagatgaagcaggagat
caggaggaagctgcaggagatgaagagaccggagtagcgggagagacagggggagaggga
ggaacaggaggagaggaggagactcctgaggaagaaacagagggtaatgtgggggtgtca
gcagaggatgaggaagagggaggagaggaggaggtgcagttgaatgctgtggtggagttt
aatcctgaagacgaggagggtgaggagatggagggaaatagagaaatccctctgatccac
cagatgaccagaacctctgtggagtcccagccaggatcaatggagaacacaaacccggag
cccagggcatcagacccagtttcacaaatgtgctccttaaccctgatagagcccaatgaa
actgtctctgatggacaccagatggcatctgcgggggaagggtcaggggggaaaggccag
aggaggagccgatctccagccagaatcaaacgcaggaaaccaaaagagagcggcatagaa
ctggatgtcctagatctgtaa
DBGET
integrated database retrieval system
